List Ontology Api
get: Returns the list of all ontologies in aberowl
GET /api/ontology/?drf_fromat=api
[ { "acronym": "BANDARQ", "name": "CapsaBandarQ.com Capsa Online, Agen Bandar Q, Domino 99, Qiu Qiu Online, BandarQ", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ONTOPARON_SOCIAL", "name": "Ontology of amyotrophic lateral sclerosis, social module", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "GEOSPECIES", "name": "GeoSpecies Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 8, "download_url": "media/ontologies/GEOSPECIES/1/geospecies.owl", "submission_id": 1, "domain": null, "description": "This ontology was designed to help integrate species concepts with species occurrences, gene sequences, images, references and geographical information. See also Taxonconcept.org", "documentation": "http://lod.geospecies.org/ontology/doc/index.html", "publication": "http://about.geospecies.org/", "publications": null, "products": null, "taxon": null, "date_released": "2009-05-06T07:00:00", "date_created": "2009-05-06T17:13:56", "home_page": "http://lod.geospecies.org/", "version": "2009-05-04", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SNOMED_ANATOMY", "name": "SNOMED Anatomy", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 14, "download_url": "media/ontologies/SNOMED_ANATOMY/1/snomed_anatomy.owl", "submission_id": 1, "domain": null, "description": "The Anatomy class subtree in SNOMED-CT based on SNOMED CT 2009.07.31", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-07-16T00:00:00", "date_created": "2014-04-25T18:19:12", "home_page": null, "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 26729, "nb_individuals": 0, "nb_properties": 0, "max_depth": 31, "max_children": 298, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "BRAZI", "name": "Estados, Municipios, Bairros e Regiões do Brasil", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "LINKALTERNATIF", "name": "santikumala", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "IGTO", "name": "Scientific Evidence Based Genetic Testing Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 178, "download_url": "media/ontologies/IGTO/2/igto.owl", "submission_id": 2, "domain": null, "description": "The ontology introduced a novel integrative genetic testing resource called Genetic Testing Ontology (GTO). More specifically,GTO integrated multiple well-known genetic testing resources, including Genetic Testing Registry (GTR), ClinVar, and Human Phenotype Ontology (HPO) in Web Ontology Language (OWL). A meta-ontology has been designed to capture semantics and associations based on the nature of the selected data via Protégé. The GTO was built on top of the meta-ontology subsequently by populating specific genetic testing data. In addition, literature data from Semantic MEDLINE (SM) has been extracted and integrated in the GTO to provide scientific evidence accordingly.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-02-25T00:00:00", "date_created": "2015-02-25T23:27:57", "home_page": "http://qianzhu-lab.umbc.edu/", "version": null, "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "TUNIGO-SLIM", "name": "Tunicate GO Slim", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MKN_10_TEST", "name": "MKN_10_test", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 52, "download_url": "media/ontologies/MKN_10_TEST/2/mkn_10_test.owl", "submission_id": 2, "domain": null, "description": "MKN--like the ICD10", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-05-02T00:00:00", "date_created": "2017-05-15T09:00:35", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "APAEDUCLUSTER", "name": "Educational Cluster", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 250, "download_url": "media/ontologies/APAEDUCLUSTER/1/apaeducluster.owl", "submission_id": 1, "domain": null, "description": "APA Educational Cluster, URI based ontology load", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-01-07T00:00:00", "date_created": "2015-01-11T23:28:36", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 509, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 88, "avg_children": 50, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "LEGALAPATEST2", "name": "apalegal", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 112, "download_url": "media/ontologies/LEGALAPATEST2/1/legalapatest2.owl", "submission_id": 1, "domain": null, "description": "Legal cluster for APA ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-12-21T00:00:00", "date_created": "2014-12-22T00:08:11", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 227, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 57, "avg_children": 25, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ICPC2P", "name": "International Classification of Primary Care - 2 PLUS", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 241, "download_url": "media/ontologies/ICPC2P/9/icpc2p.umls", "submission_id": 9, "domain": null, "description": "ICPC-2 PLUS", "documentation": "http://www.fmrc.org.au/", "publication": "http://www.fmrc.org.au/", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:01", "date_created": "2017-02-06T21:26:02", "home_page": "http://www.fmrc.org.au/", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 7537, "nb_individuals": 0, "nb_properties": 5, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "PEO", "name": "Parasite Experiment Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 97, "download_url": "media/ontologies/PEO/5/peo.owl", "submission_id": 5, "domain": null, "description": "The Parasite Experiment Ontology (PEO) models provenance metadata associated with experiment protocols used in parasite research. The PEO extends the upper-level Provenir ontology (http://knoesis.wright.edu/provenir/provenir.owl) to represent parasite domain-specific provenance terms.\r\n\r\nThe PEO (v 1.0) includes Proteome, Microarray, Gene Knockout, and Strain Creation experiment terms along with other terms that are used in pathway.", "documentation": "http://wiki.knoesis.org/index.php/Parasite_Experiment_ontology", "publication": "http://wiki.knoesis.org/index.php/Parasite_Experiment_ontology", "publications": null, "products": null, "taxon": null, "date_released": "2011-06-20T07:00:00", "date_created": "2011-06-20T15:06:06", "home_page": "http://wiki.knoesis.org/index.php/Parasite_Experiment_ontology", "version": "1", "has_ontology_language": "OWL", "nb_classes": 143, "nb_individuals": 27, "nb_properties": 40, "max_depth": 4, "max_children": 18, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "RDL", "name": "RDL", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 246, "download_url": "media/ontologies/RDL/1/rdl.owl", "submission_id": 1, "domain": null, "description": "RDL", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T20:31:22", "home_page": null, "version": "Generated 2013-03-28T19:01:04.897+01:00", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "VSO", "name": "Vital Sign Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 537, "download_url": "media/ontologies/VSO/1/vso.owl", "submission_id": 1, "domain": null, "description": "The Vital Sign Ontology (VSO) is an extension of the Ontology for General Medical Science (OGMS). VSO covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. \r\nVSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. ", "documentation": "http://code.google.com/p/vital-sign-ontology/", "publication": "http://ontology.buffalo.edu/smith/articles/Vital_Sign_Ontology.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2012-04-25T07:00:00", "date_created": "2012-07-23T14:55:21", "home_page": "http://code.google.com/p/vital-sign-ontology/", "version": "2012-04-25", "has_ontology_language": "OWL", "nb_classes": 181, "nb_individuals": 5, "nb_properties": 504, "max_depth": 10, "max_children": 10, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CNO", "name": "Computational Neuroscience Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 218, "download_url": "media/ontologies/CNO/8/cno.owl", "submission_id": 8, "domain": null, "description": "CNO is a controlled vocabulary of terms used in Computational Neurosciences to describe models of the nervous system. \r\nThis first release of CNO is an alpha version and should be further aligned with other ontologies accessible on Bioportal and should be made compliant with the OBO foundry recommendations. \r\nThis work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.\r\nIf you have any comments, questions or suggestions, please contact Yann Le Franc at ylefranc(at)gmail.com.", "documentation": "https://github.com/INCF/Computational-Neurosciences-Ontology--C.N.O.-/wiki", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-11-17T02:21:21", "date_created": "2015-11-17T02:21:21", "home_page": null, "version": "version 0.5", "has_ontology_language": "OWL", "nb_classes": 395, "nb_individuals": 20, "nb_properties": 40, "max_depth": 11, "max_children": 27, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "BIOMODELS", "name": "BioModels Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 180, "download_url": "media/ontologies/BIOMODELS/3/biomodels.owl", "submission_id": 3, "domain": null, "description": "OWL Representation of the models in the BioModels repository.", "documentation": null, "publication": "http://www.biomedcentral.com/1752-0509/5/124", "publications": null, "products": null, "taxon": null, "date_released": "2012-03-01T08:00:00", "date_created": "2012-04-03T15:41:06", "home_page": "https://code.google.com/p/sbmlharvester/", "version": "21", "has_ontology_language": "OWL", "nb_classes": 187520, "nb_individuals": 17, "nb_properties": 70, "max_depth": 27, "max_children": 11116, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SNOMED_TEST", "name": "SNOMED Test Findings", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 522, "download_url": "media/ontologies/SNOMED_TEST/1/snomed_test.owl", "submission_id": 1, "domain": null, "description": "The Test Findings subtree in SNOMED-CT based on SNOMED-CT v. 2009.01.31", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-07-16T00:00:00", "date_created": "2014-04-25T18:28:52", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 4432, "nb_individuals": 0, "nb_properties": 0, "max_depth": 10, "max_children": 125, "avg_children": 6, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "TEO", "name": "Time Event Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 9, "download_url": "media/ontologies/TEO/4/teo.owl", "submission_id": 4, "domain": null, "description": "The Time Event Ontology (TEO) is an ontology for representing events, time, and their relationships.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-04-26T07:00:00", "date_created": "2012-04-27T16:21:15", "home_page": null, "version": "1.0.8", "has_ontology_language": "OWL", "nb_classes": 728, "nb_individuals": 41, "nb_properties": 91, "max_depth": 9, "max_children": 38, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "OntoVIP", "name": "Medical image simulation", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 293, "download_url": "media/ontologies/OntoVIP/1/ontovip.owl", "submission_id": 1, "domain": null, "description": "The OntoVIP ontology was developed in the context of the Virtual Imaging Platform project (VIP), a french project supported by ANR (ANR-09-COSI-03 grant) aiming at sharing medical image simulation resources. \r\nThis ontology describes the content of the models used in medical image simulation. This ontology can be used to annotate such models in order to highlight the different entities that are present in the 3D scene to be imaged, i.e. anatomical structures, pathological structures, foreign bodies, contrast agents etc. The model allows also to associate to these entities information about their physical qualities, which are used in the medical image simulation process (to mimick physical phenomena involved in CT, MR, US and PET imaging). This ontology partly relies on the OntoNeuroLOG ontology (ONL-DP ONL-MR-DA), as well as PATO, RadLex, FMA and ChEBI.", "documentation": "http://vip.creatis.insa-lyon.fr/ontovip/v1.0/Doc-OntoSpec-OntoVIP-V1.0.zip", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-12T07:00:00", "date_created": "2013-07-12T06:16:00", "home_page": "http://vip.creatis.insa-lyon.fr/ontovip/v1.0/Documentation_OntoVIPv1.pdf", "version": "v1", "has_ontology_language": "OWL", "nb_classes": 702, "nb_individuals": 42, "nb_properties": 244, "max_depth": 13, "max_children": 38, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "GEPECO", "name": "Gerry Peter Coen Ontology", "status": "Unknown", "topics": [ "RDM; Ontologies" ], "species": [ "Rare Bird" ], "submission": null }, { "acronym": "HUTRO", "name": "Human Trafficking Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "DDIO", "name": "Drug Drug Interaction Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 811, "download_url": "media/ontologies/DDIO/1/ddio.owl", "submission_id": 1, "domain": null, "description": "Drug Drug Interaction Ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-09T00:00:00", "date_created": "2017-11-10T03:27:34", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CEDARPC", "name": "CEDAR Provisional Classes", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 535, "download_url": "media/ontologies/CEDARPC/1/cedarpc.owl", "submission_id": 1, "domain": null, "description": "CEDAR Provisional Classes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-04-15T00:00:00", "date_created": "2016-04-15T18:28:45", "home_page": "http://metadatacenter.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "HIVCRS", "name": "HIVCompoundRels", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 296, "download_url": "media/ontologies/HIVCRS/1/hivcrs.owl", "submission_id": 1, "domain": null, "description": "The Ontology to express the ternary relations of HIV1", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-14T00:00:00", "date_created": "2017-04-14T04:43:27", "home_page": "http://blog.51.ca/u-345129/", "version": "1", "has_ontology_language": "OWL", "nb_classes": 8, "nb_individuals": 0, "nb_properties": 3, "max_depth": 2, "max_children": 4, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "COGPO", "name": "Cognitive Paradigm Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 81, "download_url": "media/ontologies/COGPO/1/cogpo.owl", "submission_id": 1, "domain": null, "description": "This ontology is used to describe the experimental conditions within cognitive/behavioral experiments, primarily in humans.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-11-17T08:00:00", "date_created": "2010-12-16T23:40:36", "home_page": "http://www.cogpo.org", "version": "1", "has_ontology_language": "OWL", "nb_classes": 400, "nb_individuals": 25, "nb_properties": 58, "max_depth": 7, "max_children": 81, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RAFIRAJOGUJA", "name": "Sewa Bus Jogja", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CSTD", "name": "Clinical smell and taste disorders", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AI", "name": "Artificial Intelligence", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6958, "download_url": "media/ontologies/AI/1/ai.owl", "submission_id": 1, "domain": null, "description": "An ontology for artificial intelligence, specifically focused on generative AI, aiming to support and facilitate new research in this domain by providing a structured representation of key concepts, methods, and technologies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-10-24T00:00:00", "date_created": "2024-10-24T07:40:56", "home_page": "https://ruslanmv.com/", "version": "2024-08-14", "has_ontology_language": "OWL", "nb_classes": 444, "nb_individuals": 0, "nb_properties": 2, "max_depth": 5, "max_children": 47, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GTO", "name": "Genetic Test", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 99, "download_url": "media/ontologies/GTO/1/gto.owl", "submission_id": 1, "domain": null, "description": "The ontology integrated multiple well-known genetic testing resources, to provide scientific evidence accordingly", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-02-27T00:00:00", "date_created": "2015-02-27T18:40:40", "home_page": "http://qianzhu-lab.umbc.edu/", "version": null, "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "OCRE", "name": "Ontology of Clinical Research", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 106, "download_url": "media/ontologies/OCRE/23/ocre.owl", "submission_id": 23, "domain": null, "description": "OCRe is an ontology designed to support systematic description of, and interoperable queries on, human studies and study elements.", "documentation": "http://rctbank.ucsf.edu/home/ocre", "publication": "http://rctbank.ucsf.edu/home/ocre", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-21T07:00:00", "date_created": "2013-06-21T18:16:55", "home_page": "http://rctbank.ucsf.edu/home/ocre", "version": "Revision 315", "has_ontology_language": "OWL", "nb_classes": 389, "nb_individuals": 39, "nb_properties": 220, "max_depth": 6, "max_children": 19, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "VEMO", "name": "Veterinary Epidemiology Metadata Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SITUSJUALRUMAH", "name": "Jual Rumah", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "NTDO", "name": "Neglected Tropical Disease Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 116, "download_url": "media/ontologies/NTDO/1/ntdo.owl", "submission_id": 1, "domain": null, "description": "The Neglected Tropical Disease Ontology (NTDO) aims at representing classes and relations to a specific set of diseases which persist in exactly the physical, psychosocial and economic situation of the poorest, most marginalized populations of the developing world, the Neglected Tropical Diseases (NTD). The current focus of NTDO is related to the transmission of vector-borne diseases and how they are related to the death.\r\nNTDO is based on BioTop (main classes and relations) and GFO (Time Representation) and represented in Description Logics (DL).\r\nNTDO includes information about the proper disease, its causative agent (when available), dispositions, and the geographic location the disease happens. In addition, NTDO includes a generic attempt to identify the process which leads a person to death, due to NTDs or other diseases.\r\nNTDO was built with a rich set of axioms and the intended usage is related to Health Surveillance of NTD-related morbidity and mortality cases.\r\n", "documentation": "http://www.cin.ufpe.br/~ntdo", "publication": "http://www.cin.ufpe.br/~ntdo", "publications": null, "products": null, "taxon": null, "date_released": "2012-09-11T07:00:00", "date_created": "2012-09-12T18:30:35", "home_page": "http://www.cin.ufpe.br/~ntdo", "version": "Rev. 368", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "OGDI", "name": "Ontology for Genetic Disease Investigations", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 303, "download_url": "media/ontologies/OGDI/3/ogdi.owl", "submission_id": 3, "domain": null, "description": "It is the ontology used to model the scientific investigation, especially Genome-Wide Association Study (GWAS), to find out genetic susceptibility factor to disease, such as Diabetes. It models the genetic varaints, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes, :Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism Disorder (OGMD) .", "documentation": null, "publication": "http://www.med.kobe-u.ac.jp/journal/contents/55/E53.pdf, http://www.academia.edu/213769/Ontology_of_Genetic_Susceptibility_Factors_to_Diabetes_Mellitus_OGSF-DM_", "publications": null, "products": null, "taxon": null, "date_released": "2013-01-30T08:00:00", "date_created": "2013-01-30T17:12:44", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 386, "nb_individuals": 363, "nb_properties": 109, "max_depth": 12, "max_children": 22, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SCTSPA", "name": "SNOMED Terminos Clinicos", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 310, "download_url": "media/ontologies/SCTSPA/9/sctspa.umls", "submission_id": 9, "domain": null, "description": "SNOMED Terminos Clinicos (SNOMED CT), Edicion en Espanol, Distribucion Internacional, Octubre de 2008, 2009_04_30", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:58", "date_created": "2017-02-06T21:26:59", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 319575, "nb_individuals": 0, "nb_properties": 129, "max_depth": 28, "max_children": 2379, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "IMMDIS", "name": "Immune Disorder Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 313, "download_url": "media/ontologies/IMMDIS/1/immdis.obo", "submission_id": 1, "domain": null, "description": "The Immune Disorder Ontology was generated as part of the Bioinformatics Integration Support Contract (BISC) funded by the Division of Allergy, Immunology and Transplantation (DAIT) within NIAID. The ontology is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases. \r\n<br><br>\r\n<b>Lineage(s)</b>\r\n<br><br>\r\nA class may be related to its superclass through a true is_a relationship (e.g., Polymyositis is a Dermatomyositis, which is an Autoimmune_Disease, which is an Immune_Disorder). Based on description logic, a class inherits all the Relationships (Object Properties) and Datatype Properties (if any) assigned to its superclass. In a few occasions, a class may have more than one superclass and belongs to more than one lineage. \r\n<br><br>\r\n<b>Annotations</b>\r\n<br><br>\r\nSpecific information may be available about a class, including Preferred_Name, DEFINITION, Synonym, etc. The following provides more detail on annotation information presented:<br>\r\nDEFINITION: A human-readable definition is provided for each class in the ontology and the displayed format is Owner|Definition (Source).<br>\r\nFULL_SYN: Synonym of a class in the ontology with type (PT: preferred term, SY: synonym) and source of this synonym indicated. Synonym|Type of Synonym|Source of Synonym is the format displayed.<br>\r\nICD-10_Code: Code of International Classification of Diseases and Related Health Problems, 10th revision. ICD-10 is a detailed description of known diseases and injuries. It is published by the World Health Organization (WHO) and is used worldwide for mortality statistics.<br>\r\nICD-9_Code: Code of International Classification of Diseases and Related Health Problems, 9th revision.<br>\r\nClass Name: Class_Name is used as a unique identifier by Protege-OWL, the environment where this ontology is being developed and therefore has to be OWL-compliant. Class_Name is composed of a string only made of digits, letters, underscores, and hyphens. A Class_Name cannot start with a digit.<br>\r\nPreferred_Name: A human-friendly and commonly used name in plain English.<br>\r\nSynonym: Synonym of a class in plain English, including those in plural form or British spelling. In contrast to FULL_SYN, no type nor source of synonym is indicated. Synonym is human-friendly and not OWL-compliant. A class may have multiple synonyms.<br>\r\nUMLS_CUI: Concept Unique Identifier in Unified Medical Language System that is produced and distributed by NLM. There are three UMLS Knowledge Sources: the Metathesaurus, the Semantic Network, and SPECIALIST Lexicon. The purpose of UMLS is to facilitate the development of computer systems that behave as if they \"understand\" the meaning of the language of biomedicine and health.\r\n<br><br>\r\n<b>Relationships (Object Properties)</b>\r\n<br><br>\r\nRelationships are properties by which one class is related to another class in the ontology. For example, \"Population_Group\" (a class) has_susceptibility_to_disease (a relationship) \"Immune_Disorder\" (a class). This box may be empty if no relationship has been used for modeling. \r\n<br><br>\r\n<b>Datatype Properties</b>\r\n<br><br>\r\nDatatype Properties are properties by which a class is related to a datatype. This box may be empty if no datatype property has been used for modeling.\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-31T07:00:00", "date_created": "2012-07-31T14:07:10", "home_page": null, "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ABBS", "name": "abbssm", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "HIV", "name": "HIV ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 129, "download_url": "media/ontologies/HIV/12/hiv.obo", "submission_id": 12, "domain": null, "description": "The HIV ontology encompasses all knowledge about HIV", "documentation": "bio-toolkit.com", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-03-20T00:00:00", "date_created": "2017-04-04T23:01:09", "home_page": "bio-toolkit.com", "version": "2.7", "has_ontology_language": "OBO", "nb_classes": 5904, "nb_individuals": 1, "nb_properties": 10, "max_depth": 2, "max_children": 3307, "avg_children": 259, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CHARITYAUER", "name": "How Sun Shade Sails Can Enhance Your Outdoor Lifestyle", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "LINK_ALTERNATIF", "name": "santi kumala", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "OFL", "name": " A comprehensive ontology of flaps in reconstructive surgery", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MOVIE", "name": "Nonton Gratis Movie Online", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "WEDDING", "name": "Naadia", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MDNEET", "name": "MD_NEET", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "HERO", "name": "Healthcare Monitoring and Emergency Response Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "TAON", "name": "Therapeutic Antibody Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MAAS Ontology", "name": "Multi Agent Autonomous Systems Ontology", "status": "Unknown", "topics": [ "Robotics", "Artificial Intelligence", "Dynamic Reference Information", "Autonomous Systems", "Object Recognition", "Dynamic Decision Making" ], "species": [ "Robotics" ], "submission": null }, { "acronym": "CTP", "name": "Current Procedural Terminology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SATUSEHATTHESIS", "name": "SatuSehatThesis", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BTO-BFO", "name": "Brinell Test Ontology-BFO", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MEDDRA", "name": "Medical Dictionary for Regulatory Activities Terminology (MedDRA)", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 142, "download_url": "media/ontologies/MEDDRA/9/meddra.umls", "submission_id": 9, "domain": null, "description": "Medical Dictionary for Regulatory Activities Terminology (MedDRA)", "documentation": "http://www.meddramsso.com/MSSOWeb/contact_us/index.htm", "publication": "http://www.meddramsso.com/MSSOWeb/contact_us/index.htm", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:10", "date_created": "2017-02-06T21:26:10", "home_page": "http://www.meddramsso.com/MSSOWeb/contact_us/index.htm", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 69107, "nb_individuals": 0, "nb_properties": 16, "max_depth": 3, "max_children": 250, "avg_children": 15, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "RIVERSTATE", "name": "elections", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "HHEARVS", "name": "HHEAR Value Sets", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SDOHO", "name": "social determinants of health ontology-TaoLab", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ROXY", "name": "Roxy", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BILELTEST", "name": "Bileltest", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "IBO", "name": "Imaging Biomarker Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CS", "name": "Coping Strategies for Adverse Drug Events Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AJAY", "name": "ajaykumar", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "INFRA-EN", "name": "Infrastructure", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "INBANCIDO", "name": "Assessment of Indian Economy During Covid-19 ", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MARKETING", "name": "Willy Mike", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "FRAPO", "name": "Funding, Research Administration and Projects Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "COMO", "name": "Context and Measurement Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7818, "download_url": "media/ontologies/COMO/8/como.obo", "submission_id": 8, "domain": null, "description": "Ontological terms to describe experimental data, probably useful for other environmental microbiology projects. Used in several CORAL (Contextual Ontology-based Repository Analysis Library) deployments. See more about this platfom at https://github.com/jmchandonia/CORAL", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-16T02:01:55", "date_created": "2025-12-15T00:00:00", "home_page": null, "version": "2025-08-13", "has_ontology_language": "OBO", "nb_classes": 531, "nb_individuals": 0, "nb_properties": 2, "max_depth": 10, "max_children": 55, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO19115CC", "name": "ISO 19115 Common Classes", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 587, "download_url": "media/ontologies/ISO19115CC/2/iso19115cc.owl", "submission_id": 2, "domain": null, "description": "ISO 19115 Common Classes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-16T00:00:00", "date_created": "2017-07-16T20:43:25", "home_page": null, "version": "2014", "has_ontology_language": "OWL", "nb_classes": 21, "nb_individuals": 28, "nb_properties": 19, "max_depth": 1, "max_children": 19, "avg_children": 10, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ONTOPSYCHIA", "name": "OntoPsychia, social module", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 149, "download_url": "media/ontologies/ONTOPSYCHIA/1/ontopsychia.owl", "submission_id": 1, "domain": null, "description": "Ontology of social and environmental determinants for psychiatry", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-12-07T00:00:00", "date_created": "2015-06-10T13:10:14", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 1478, "nb_individuals": 0, "nb_properties": 199, "max_depth": 11, "max_children": 56, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SNOMED_CF", "name": "SNOMED Clinical Finding", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 159, "download_url": "media/ontologies/SNOMED_CF/1/snomed_cf.owl", "submission_id": 1, "domain": null, "description": "Extract from SNOMED", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-05-07T00:00:00", "date_created": "2014-05-08T00:52:30", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 106621, "nb_individuals": 0, "nb_properties": 0, "max_depth": 12, "max_children": 565, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "GMO", "name": "Growth Medium Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 644, "download_url": "media/ontologies/GMO/6/gmo.owl", "submission_id": 6, "domain": null, "description": "A structured controlled vocabulary for describing ingredients that constitute microbial growth media used in biological research centers.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-08T00:00:00", "date_created": "2015-04-08T03:27:15", "home_page": null, "version": "0.16 Beta", "has_ontology_language": "OWL", "nb_classes": 1039, "nb_individuals": 1021, "nb_properties": 135, "max_depth": 5, "max_children": 431, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "NLMVS", "name": "NIH NLM Value Sets", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 163, "download_url": "media/ontologies/NLMVS/1/nlmvs.skos", "submission_id": 1, "domain": null, "description": "NIH NLM Value Set as a SKOS terminology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-07-14T00:00:00", "date_created": "2015-07-11T01:01:44", "home_page": "https://github.com/ncbo/NLMVS2RDF", "version": "1.0", "has_ontology_language": "SKOS", "nb_classes": 5, "nb_individuals": 75173, "nb_properties": 18, "max_depth": 0, "max_children": 4, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "NDDF", "name": "National Drug Data File", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 166, "download_url": "media/ontologies/NDDF/9/nddf.umls", "submission_id": 9, "domain": null, "description": "National Drug Data File Plus Source Vocabulary", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:14", "date_created": "2017-02-06T21:26:14", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 28111, "nb_individuals": 0, "nb_properties": 6, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SNPO", "name": "Single-Nucleotide Polymorphism (SNP) Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 655, "download_url": "media/ontologies/SNPO/4/snpo.owl", "submission_id": 4, "domain": null, "description": "SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels.", "documentation": null, "publication": "http://hal.inria.fr/inria-00067863/en", "publications": null, "products": null, "taxon": null, "date_released": "2017-03-14T00:00:00", "date_created": "2009-01-16T00:19:40", "home_page": "https://members.loria.fr/ACoulet/files/snpontology1.6_description.html", "version": "version: full 1.6\nrelease: 14/03/2017", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CU-VO", "name": "Venom Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 171, "download_url": "media/ontologies/CU-VO/1/cu-vo.owl", "submission_id": 1, "domain": null, "description": "An ontology of venoms and venom-related compounds, designed to facilitate the discovery of novel venom-derived therapeutics.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-09-24T00:00:00", "date_created": "2015-09-23T19:55:35", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 11, "nb_individuals": 7321, "nb_properties": 20, "max_depth": 4, "max_children": 3, "avg_children": 1, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ICNP", "name": "International Classification for Nursing Practice", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 174, "download_url": "media/ontologies/ICNP/4/icnp.owl", "submission_id": 4, "domain": null, "description": "International Classification for Nursing Practice", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-22T00:00:00", "date_created": "2015-09-16T08:20:18", "home_page": "http://www.icn.ch/what-we-do/international-classification-for-nursing-practice-icnpr/", "version": "2015", "has_ontology_language": "OWL", "nb_classes": 4212, "nb_individuals": 0, "nb_properties": 43, "max_depth": 11, "max_children": 177, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "DCM", "name": "DICOM Controlled Terminology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 209, "download_url": "media/ontologies/DCM/12/dcm.owl", "submission_id": 12, "domain": null, "description": "DICOM Controlled Terminology (PS3.16 2017d Annex D)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-09-24T00:00:00", "date_created": "2017-09-24T21:06:34", "home_page": "http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html", "version": "2017d_20170924", "has_ontology_language": "OWL", "nb_classes": 3809, "nb_individuals": 3912, "nb_properties": 18, "max_depth": 1, "max_children": 3808, "avg_children": 1904, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "WHO-ART", "name": "World Health Organization (WHO) Adverse Reaction Terminology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 260, "download_url": "media/ontologies/WHO-ART/9/who-art.umls", "submission_id": 9, "domain": null, "description": "WHO Adverse Reaction Terminology, 1997", "documentation": "http://www.who.int/", "publication": "http://www.who.int/", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:42", "date_created": "2017-02-06T21:26:42", "home_page": "http://www.who.int/", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 1851, "nb_individuals": 0, "nb_properties": 4, "max_depth": 11, "max_children": 174, "avg_children": 12, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "DCO-DEBUGIT", "name": "DebugIT Core Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 261, "download_url": "media/ontologies/DCO-DEBUGIT/1/dco-debugit.owl", "submission_id": 1, "domain": null, "description": "The Debugit Core Ontology (dco) covers the complete conceptual space of the domain of interest in the DebugIT project. It focuses on the management of antibiotics resistance within hospitals and infectious diseases to cover the clinical monitoring use cases. The ontology shall provide a semantic reference as logically defined classes in a formal and computer understandable format. It is supposed to formally represent all basic kinds of entities in the domain of interest, together with their invariant and context-independent properties. The ontology is therefore distinct from the representation of clinical knowledge as targeted by the DebugIT WP 4. Instead, it has a supportive semantic glue Function as it provides standardized and formally described meaning identifiers across the whole project, hence serving the Interoperability platform as well. ", "documentation": "http://www.ncbi.nlm.nih.gov/pubmed/20841846", "publication": "http://www.ncbi.nlm.nih.gov/pubmed/20841846", "publications": null, "products": null, "taxon": null, "date_released": "2013-05-01T00:00:00", "date_created": "2014-12-18T16:19:31", "home_page": "http://www.debugit.eu/index.php", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "IDCLOUDSEO", "name": "Idcloudseo", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MSO", "name": "Multiple sclerosis ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 555, "download_url": "media/ontologies/MSO/2/mso.owl", "submission_id": 2, "domain": null, "description": "Multiple sclerosis ontology integrated with Basic formal ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-11-11T00:00:00", "date_created": "2014-11-11T20:13:03", "home_page": "http://www.scai.fraunhofer.de/de/geschaeftsfelder/bioinformatik/downloads.html", "version": null, "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SNOMED_ORG", "name": "SNOMED Organism", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 591, "download_url": "media/ontologies/SNOMED_ORG/1/snomed_org.owl", "submission_id": 1, "domain": null, "description": "The Organism subtree in SNOMED-CT based on SNOMED-CT v. 2009.01.31", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-07-16T00:00:00", "date_created": "2014-04-25T18:25:52", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 31771, "nb_individuals": 0, "nb_properties": 0, "max_depth": 18, "max_children": 545, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CPT", "name": "Current Procedural Terminology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 595, "download_url": "media/ontologies/CPT/9/cpt.umls", "submission_id": 9, "domain": null, "description": "Current Procedural Terminology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-11-08T21:26:44", "date_created": "2017-02-06T21:26:44", "home_page": "http://www.ama-assn.org/ama/pub/category/3113.html", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 13289, "nb_individuals": 0, "nb_properties": 19, "max_depth": 7, "max_children": 278, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "TRIKMENANGJUDI", "name": "trik menang judi online", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "EXACT", "name": "An ontology for experimental actions", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 671, "download_url": "media/ontologies/EXACT/2/exact.owl", "submission_id": 2, "domain": null, "description": "EXACT aims to explicitly define the semantics of experimental protocols in order to ensure their reproducibility, and to support computer applications that assist biologists in the preparation, maintenance, submission and sharing of experimental protocols. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-09-18T00:00:00", "date_created": "2014-09-18T21:46:15", "home_page": "https://github.com/larisa-soldatova/EXACT", "version": "2", "has_ontology_language": "OWL", "nb_classes": 162, "nb_individuals": 15, "nb_properties": 17, "max_depth": 2, "max_children": 92, "avg_children": 10, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "MDDB", "name": "Master Drug Data Base Clinical Drugs", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 282, "download_url": "media/ontologies/MDDB/9/mddb.umls", "submission_id": 9, "domain": null, "description": "Master Drug Data Base, 2009_08_05", "documentation": "http://www.medispan.com", "publication": "http://www.medispan.com", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:10", "date_created": "2017-02-06T21:26:11", "home_page": "http://www.medispan.com", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 13651, "nb_individuals": 0, "nb_properties": 1, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "TESTUDEM2222", "name": "TestUdeM2222", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "INVERSEROLES", "name": "ISO-15926-2_2003_inverseRoles", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 682, "download_url": "media/ontologies/INVERSEROLES/1/inverseroles.owl", "submission_id": 1, "domain": null, "description": "ISO inverse roles ontology for oil and gas", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T20:08:14", "home_page": null, "version": "Generated 2008-09-03T19:12:44.687+02:00", "has_ontology_language": "OWL", "nb_classes": 203, "nb_individuals": 0, "nb_properties": 220, "max_depth": 9, "max_children": 28, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ISO-15926-2_2003", "name": "ISO-15926-2_2003_oil", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 686, "download_url": "media/ontologies/ISO-15926-2_2003/1/iso-15926-2_2003.owl", "submission_id": 1, "domain": null, "description": "This ontology describes gas and oil field process level descriptions", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T19:15:20", "home_page": null, "version": "Generated 2008-02-21T17:29:19.558+01:00", "has_ontology_language": "OWL", "nb_classes": 203, "nb_individuals": 0, "nb_properties": 116, "max_depth": 9, "max_children": 28, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CTONT", "name": "Epoch Clinical Trial Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 656, "download_url": "media/ontologies/CTONT/1/ctont.owl", "submission_id": 1, "domain": null, "description": null, "documentation": null, "publication": "http://smi.stanford.edu/smi-web/research/projectDetail.jsp?projectId=9", "publications": null, "products": null, "taxon": null, "date_released": "2007-03-20T07:00:00", "date_created": "2007-03-20T18:47:37", "home_page": null, "version": "<table border=\"1\">\n <tr>\n <td>\n <b><i>Version</i></b>\n </td>\n <td>\n 0.97\n </td>\n </tr>\n <tr>\n <td>\n <b><i>Date</i></b>\n </td>\n <td>\n 3/2/2007<br>\n </td>\n </tr>\n </table>\n <br>", "has_ontology_language": "OWL", "nb_classes": 43, "nb_individuals": 0, "nb_properties": 64, "max_depth": 5, "max_children": 15, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "LEGALAPA", "name": "legalapa", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 600, "download_url": "media/ontologies/LEGALAPA/1/legalapa.owl", "submission_id": 1, "domain": null, "description": "this is a test with the legal cluster of apa ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-12-19T00:00:00", "date_created": "2014-12-19T15:35:40", "home_page": null, "version": "01", "has_ontology_language": "OWL", "nb_classes": 227, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 57, "avg_children": 25, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "GEPECOONT", "name": "Gerard Peter Coen Ontology", "status": "Unknown", "topics": [ "Test" ], "species": [ "Test" ], "submission": null }, { "acronym": "CTX", "name": "Cerebrotendinous Xanthomatosis Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 623, "download_url": "media/ontologies/CTX/2/ctx.owl", "submission_id": 2, "domain": null, "description": "The ontology represents CTX phenotypes, genetic variants, and bidirectional relationships between them though a patient model. The CTX ontology was build reusing the Human Phenotype Ontology (HPO) and the Snomed ct ontologies. \r\nA set of temporal clinical manifestations are semantically annotated with a domain phenotype ontology and registered with a time-stamped value.", "documentation": "http://www.usc.es/keam/http://www.usc.es/keam/TempCTX/", "publication": "http://www.usc.es/keam/publications.html", "publications": null, "products": null, "taxon": null, "date_released": "2012-03-12T07:00:00", "date_created": "2013-04-30T08:36:30", "home_page": "http://www.usc.es/keam/~mariataboada/", "version": "vtemp2", "has_ontology_language": "OWL", "nb_classes": 479, "nb_individuals": 714, "nb_properties": 48, "max_depth": 10, "max_children": 20, "avg_children": 1, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "H1_NMOABA_4_1", "name": "NeuroMorpho.Org Allen Brain Atlas ontology v.4.1", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 628, "download_url": "media/ontologies/H1_NMOABA_4_1/1/h1_nmoaba_4_1.owl", "submission_id": 1, "domain": null, "description": "Light version of the Allen Brain Atlas ontology that is customized for the NeuroMorpho.Org brain regions. This ontology instantiates 90% of rodent brain regions from NeuroMorpho.Org v5.2.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-09-16T07:00:00", "date_created": "2011-09-16T16:21:05", "home_page": "www.neuromorpho.org", "version": "4.1", "has_ontology_language": "OWL", "nb_classes": 663, "nb_individuals": 74, "nb_properties": 0, "max_depth": 9, "max_children": 17, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "PVONTO", "name": "Pharmacovigilance Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 621, "download_url": "media/ontologies/PVONTO/1/pvonto.owl", "submission_id": 1, "domain": null, "description": "A pharmacovigilance ontology to connect known facts on drugs, disease, ADEs, and their molecular mechanisms.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-01-17T08:00:00", "date_created": "2011-01-17T20:36:32", "home_page": "http://people.eecs.ku.edu/~jhuan/", "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 33, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 9, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ONTONEO-DOC", "name": "OntONeo-documents", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 168, "download_url": "media/ontologies/ONTONEO-DOC/1/ontoneo-doc.owl", "submission_id": 1, "domain": null, "description": "Focus on the documents used along the Obstetric and Neonatal care such EHRs and consent form.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-05-23T00:00:00", "date_created": "2016-05-24T13:55:35", "home_page": "ontoneo.wordpress.com", "version": "Version 1.0", "has_ontology_language": "OWL", "nb_classes": 60, "nb_individuals": 0, "nb_properties": 7, "max_depth": 0, "max_children": 19, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "TYSON", "name": "ZTWOEM", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "APATANDT", "name": "APA Tests and Testing cluster", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 597, "download_url": "media/ontologies/APATANDT/1/apatandt.owl", "submission_id": 1, "domain": null, "description": "APA Tests and Testing Cluster", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-12-29T00:00:00", "date_created": "2015-01-12T01:23:08", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 208, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 41, "avg_children": 18, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ISO19115DI", "name": "ISO 19115 Distribution Information", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 251, "download_url": "media/ontologies/ISO19115DI/2/iso19115di.owl", "submission_id": 2, "domain": null, "description": "ISO 19115 Distribution Information", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-17T01:04:41", "date_created": "2017-07-17T01:04:41", "home_page": null, "version": "2014", "has_ontology_language": "OWL", "nb_classes": 18, "nb_individuals": 9, "nb_properties": 32, "max_depth": 1, "max_children": 16, "avg_children": 8, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ENEM-EC", "name": "ENEM Educational Contexts", "status": "Classified", "topics": [ "object", "place", "location" ], "species": [ "material objects and places" ], "submission": { "id": 2940, "download_url": "media/ontologies/ENEM-EC/1/enem-ec.owl", "submission_id": 1, "domain": null, "description": "This ontology map the education objects and the places where they appear. Their content is based in the brazilian exam Exame Nacional do Ensino Médio (ENEM).", "documentation": null, "publication": "2019", "publications": null, "products": null, "taxon": null, "date_released": "2019-09-29T21:55:24.103187", "date_created": "2019-09-29T21:55:24.103168", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 3, "nb_individuals": 1760, "nb_properties": 5, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BHF", "name": "Han Fei Bao", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 363, "download_url": "media/ontologies/BHF/1/bhf.owl", "submission_id": 1, "domain": null, "description": "The ontology covers the knowledge on AIDS and the relevant clinical activities, which imports the HIV ontology as its concepts of main frame.", "documentation": "http://blog.51.ca/u-345129/", "publication": "http://bhf.miforum.net/english/index_english.htm", "publications": null, "products": null, "taxon": null, "date_released": "2016-06-22T00:00:00", "date_created": "2016-06-22T20:03:42", "home_page": "http://bhf.miforum.net/english/index_english.htm", "version": "001", "has_ontology_language": "OWL", "nb_classes": 98, "nb_individuals": 0, "nb_properties": 2, "max_depth": 1, "max_children": 94, "avg_children": 48, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "FLU", "name": "Influenza Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 167, "download_url": "media/ontologies/FLU/27/flu.owl", "submission_id": 27, "domain": null, "description": "Starting in the fall of 2007, a collaborative group of influenza researchers have established an influenza ontology. The influenza ontology is an application ontology. \r\n\r\nConsolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-21T01:03:53", "date_created": "2015-08-21T01:03:53", "home_page": "http://purl.obolibrary.org/obo/flu/", "version": "0.9.0", "has_ontology_language": "OWL", "nb_classes": 789, "nb_individuals": 37, "nb_properties": 66, "max_depth": 9, "max_children": 48, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "RadLex_OWL", "name": "RadLex in OWL", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 287, "download_url": "media/ontologies/RadLex_OWL/1/radlex_owl.owl", "submission_id": 1, "domain": null, "description": "An OWL representation of the RadLex ontology, following the transformation described at http://www.bioontology.org/wiki/index.php/FMAInOwl", "documentation": "http://www.bioontology.org/wiki/index.php/FMAInOwl", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-11-06T08:00:00", "date_created": "2009-11-07T01:13:13", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 24056, "nb_individuals": 24098, "nb_properties": 450, "max_depth": 21, "max_children": 1912, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "G-PROV", "name": "Guideline Provenance", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5714, "download_url": "media/ontologies/G-PROV/1/g-prov.owl", "submission_id": 1, "domain": null, "description": "The ontology provides the vocabulary for enabling provenance in clinical decision support systems. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-04-10T00:00:00", "date_created": "2019-04-10T20:31:30", "home_page": "https://tetherless-world.github.io/GProv/", "version": "1", "has_ontology_language": "OWL", "nb_classes": 88, "nb_individuals": 14, "nb_properties": 76, "max_depth": 5, "max_children": 22, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HSDB_OCRe", "name": "HSDB OCRe view", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 336, "download_url": "media/ontologies/HSDB_OCRe/3/hsdb_ocre.owl", "submission_id": 3, "domain": null, "description": "This view contains HSDB extensions of OCRe. It contains additional defined classes in OCRe_ext (which imports OCRe) and annotations (in HSDB_OCRe) needed for the automatic generation of HSDB XSD.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-02-21T08:00:00", "date_created": "2012-02-21T17:20:42", "home_page": null, "version": "$Revision$", "has_ontology_language": "OWL", "nb_classes": 356, "nb_individuals": 35, "nb_properties": 208, "max_depth": 6, "max_children": 18, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "APACOMPUTER", "name": "Computer Cluster", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 530, "download_url": "media/ontologies/APACOMPUTER/1/apacomputer.owl", "submission_id": 1, "domain": null, "description": "APA Computer Cluster", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-09-01T00:00:00", "date_created": "2015-04-22T00:01:02", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 114, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 36, "avg_children": 12, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CEPATHAMIL", "name": "caracepathaml", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "DDI", "name": "Ontology for Drug Discovery Investigations", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 141, "download_url": "media/ontologies/DDI/2/ddi.owl", "submission_id": 2, "domain": null, "description": "The goal of DDI project is to develop an ontology for the description of drug discovery investigations. DDI aims to follow to the OBO (Open Biomedical Ontologies) Foundry principles, uses relations laid down in the OBO Relation Ontology, and be compliant with Ontology for biomedical investigations (OBI).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-01-01T08:00:00", "date_created": "2013-04-22T03:51:24", "home_page": "http://purl.org/ddi/home", "version": "$Revision$", "has_ontology_language": "OWL", "nb_classes": 167, "nb_individuals": 19, "nb_properties": 25, "max_depth": 8, "max_children": 13, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ICPS", "name": "International Classification for Patient Safety", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 664, "download_url": "media/ontologies/ICPS/7/icps.owl", "submission_id": 7, "domain": null, "description": "Ontology network about Patient Safety Incident. This work has been carried out by the Ontological Engineering Group, using sources from the University of Saint Etienne and the Australian Patient Safety Foundation, and supported by the World Health Organisation under the International Classification for Patient Safety programme.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-06-28T07:00:00", "date_created": "2012-02-06T09:36:05", "home_page": "http://www.oeg-upm.net/", "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 398, "nb_individuals": 759, "nb_properties": 168, "max_depth": 5, "max_children": 50, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "RB", "name": "RegenBase ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 89, "download_url": "media/ontologies/RB/5/rb.owl", "submission_id": 5, "domain": null, "description": "The RegenBase ontology describes biological entities and processes studied in spinal cord injury (SCI) research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-16T02:29:16", "date_created": "2016-01-16T02:29:16", "home_page": "http://regenbase.org", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 573, "nb_individuals": 0, "nb_properties": 26, "max_depth": 12, "max_children": 36, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "PXO", "name": "Proteasix Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 674, "download_url": "media/ontologies/PXO/10/pxo.owl", "submission_id": 10, "domain": null, "description": "The Proteasix Ontology (PxO) is a new application ontology that supports the Proteasix tool\r\n(http://www.proteasix.org/). Proteasix is an open-source peptide-centric tool that can be used to predict\r\nautomatically and in a large-scale fashion in silico the proteases involved in the generation of proteolytic\r\ncleavage fragments (peptides).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-15T02:19:04", "date_created": "2016-01-15T02:19:04", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ESSO", "name": "Epilepsy Syndrome Seizure Ontology", "status": "Incoherent", "topics": null, "species": null, "submission": { "id": 687, "download_url": "media/ontologies/ESSO/5/esso.owl", "submission_id": 5, "domain": null, "description": "This ontology contains epilepsy syndromes, seizure types, and data elements associated with them.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-16T00:00:00", "date_created": "2015-11-10T21:25:54", "home_page": null, "version": "1.03", "has_ontology_language": "OWL", "nb_classes": 2705, "nb_individuals": 0, "nb_properties": 166, "max_depth": 12, "max_children": 214, "avg_children": 3, "classifiable": true, "nb_inconsistent": 508, "indexed": true, "md5sum": null } }, { "acronym": "APATREATMENT", "name": "APA Treatment Cluster", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 534, "download_url": "media/ontologies/APATREATMENT/1/apatreatment.owl", "submission_id": 1, "domain": null, "description": "APA Treatment Cluster", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-12-16T00:00:00", "date_created": "2015-01-12T01:50:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 480, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 126, "avg_children": 48, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "NDFRT", "name": "National Drug File - Reference Terminology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 696, "download_url": "media/ontologies/NDFRT/10/ndfrt.umls", "submission_id": 10, "domain": null, "description": "National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11", "documentation": "http://www.va.gov", "publication": "http://www.va.gov", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:15", "date_created": "2017-02-06T21:26:16", "home_page": "http://www.va.gov", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 35479, "nb_individuals": 0, "nb_properties": 53, "max_depth": 11, "max_children": 941, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SANTIKUMALA", "name": "santihui", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "COID", "name": "Combined Ontology for Inflammatory Diseases", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5049, "download_url": "media/ontologies/COID/1/coid.owl", "submission_id": 1, "domain": null, "description": "A domain ontology for inflammatory diseases, with ICD-10 used as a foundation. Ontology is expanded to include medical therapies, anatomy, and symptoms. With the addition of synonyms and lay terms derived from embedding models.", "documentation": "https://sap218.github.io/coid/MIRO", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-04-20T00:00:00", "date_created": "2022-04-20T17:04:10", "home_page": "https://github.com/sap218/coid", "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 1185, "nb_individuals": 0, "nb_properties": 4, "max_depth": 11, "max_children": 33, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "alperk", "name": "Alper K.", "status": "Unknown", "topics": [ "biomedical" ], "species": [], "submission": null }, { "acronym": "PAINO", "name": "Pain Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ARCRC", "name": "Arctic Report Card", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "TT476", "name": "Tony Tran", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "NAMKHOA", "name": "phong kham nam khoa", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "DSIP", "name": "Pharmacy mock data", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "LIPRO", "name": "Lipid Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 344, "download_url": "media/ontologies/LIPRO/4/lipro.owl", "submission_id": 4, "domain": null, "description": "Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical functions can be applied. The ontology describes the LIPIDMAPS nomenclature classification explicitly using description logics (OWL-DL). Lipid classes are organized hierarchically with the super-classes restricted by generic necessary conditions. More specific necessary conditions are used to define membership requirements for sub classes of lipid according to appropriate functional groups.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-02-12T04:34:46", "date_created": "2014-02-12T04:34:47", "home_page": null, "version": "See Remote Site", "has_ontology_language": "OWL", "nb_classes": 276, "nb_individuals": 0, "nb_properties": 16, "max_depth": 1, "max_children": 272, "avg_children": 68, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "zinnane", "name": "fatima", "status": "Unknown", "topics": [ "phd" ], "species": [ "it" ], "submission": null }, { "acronym": "HALLIE", "name": "Hallie Richardson", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "REST_MANAG", "name": "Restaurant Management", "status": "Unknown", "topics": [ "restaurant", "fast food" ], "species": [], "submission": null }, { "acronym": "URL", "name": "URL ONTOLOGY", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "NEET_", "name": "NEET_Ontology_", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SHERIF", "name": "Sherif", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ICD10", "name": "International Classification of Diseases, Version 10", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 351, "download_url": "media/ontologies/ICD10/9/icd10.umls", "submission_id": 9, "domain": null, "description": "International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:43", "date_created": "2017-02-06T21:26:44", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 12445, "nb_individuals": 0, "nb_properties": 1, "max_depth": 4, "max_children": 27, "avg_children": 6, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ANCO", "name": "ANC Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7911, "download_url": "media/ontologies/ANCO/1/anco.owl", "submission_id": 1, "domain": null, "description": "Ontology for Antenatal Care data capture, visits, services, risks, and outcomes.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-27T00:00:00", "date_created": "2025-11-27T00:00:00", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 0, "nb_properties": 8, "max_depth": 1, "max_children": 9, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NORREG", "name": "Norwegian national quality registries- Variabelbibliotek for medisinske kvalitetsregistre ", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 378, "download_url": "media/ontologies/NORREG/1/norreg.owl", "submission_id": 1, "domain": null, "description": "Norway has 52 national quality registers with over 5000 different variables, which each has their own value set. This is a mapping between similar variables and to other ontologies.", "documentation": "https://docs.google.com/spreadsheets/d/1w2NatnnDfacYqrs24HDxQuEBM_xmGxL8-DilqAHVFDM/edit#gid=1014457671", "publication": "https://docs.google.com/spreadsheets/d/1w2NatnnDfacYqrs24HDxQuEBM_xmGxL8-DilqAHVFDM/edit#gid=1014457671", "publications": null, "products": null, "taxon": null, "date_released": "2016-02-06T00:00:00", "date_created": "2016-02-06T12:06:14", "home_page": "https://docs.google.com/spreadsheets/d/1w2NatnnDfacYqrs24HDxQuEBM_xmGxL8-DilqAHVFDM/edit#gid=1014457671", "version": null, "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SEP", "name": "Sample Processing and Separation Techniques Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 788, "download_url": "media/ontologies/SEP/4/sep.obo", "submission_id": 4, "domain": null, "description": "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative.", "documentation": "http://psidev.info/index.php?q=node/312", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-22T01:06:42", "date_created": "2017-11-03T20:31:30", "home_page": "http://psidev.info/index.php?q=node/312", "version": "1.070708", "has_ontology_language": "OBO", "nb_classes": 547, "nb_individuals": 1, "nb_properties": 3, "max_depth": 8, "max_children": 37, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "PPIO", "name": "Protein-Protein Interaction Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 383, "download_url": "media/ontologies/PPIO/23/ppio.obo", "submission_id": 23, "domain": null, "description": "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative.", "documentation": "http://psidev.sourceforge.net/mi/xml/doc/user/index.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-10-13T01:06:26", "date_created": "2015-10-13T01:06:26", "home_page": "http://psidev.sf.net", "version": "3.79.0", "has_ontology_language": "OBO", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "AIDSONT", "name": "AIDSOntology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 609, "download_url": "media/ontologies/AIDSONT/1/aidsont.owl", "submission_id": 1, "domain": null, "description": "This ontology will cover the knowledge on AIDS and the relevant clinic activities, which imports the HIV ontology at the site https://bioportal.bioontology.org/ontologies/HIVO004 as its main or basic concept system. \r\n\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-24T00:00:00", "date_created": "2016-06-24T16:43:15", "home_page": null, "version": "001", "has_ontology_language": "OWL", "nb_classes": 98, "nb_individuals": 0, "nb_properties": 2, "max_depth": 1, "max_children": 94, "avg_children": 48, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "HSCLO38", "name": "Homo sapiens Chromosomal Location Ontology for GRCh38", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BRCT", "name": "Brain Region & Cell Type terminology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 386, "download_url": "media/ontologies/BRCT/1/brct.owl", "submission_id": 1, "domain": null, "description": "The BRCT stands for Brain Region and Cell Type terminology, which was built with the purpose of organizing the knowledge domain of brain anatomy with a top-down granularity, from\r\ngross regions to cell types. This resource has been created for use in the IMI-funded AETIONOMY project (www.aetionomy.org).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-17T00:00:00", "date_created": "2014-11-03T11:59:47", "home_page": null, "version": "3.0", "has_ontology_language": "OWL", "nb_classes": 1654, "nb_individuals": 0, "nb_properties": 7, "max_depth": 11, "max_children": 305, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "EDU", "name": "Jobs", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "APANEUROCLUSTER", "name": "APA Neuro Cluster", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 714, "download_url": "media/ontologies/APANEUROCLUSTER/1/apaneurocluster.owl", "submission_id": 1, "domain": null, "description": "APA Neuropsychology and Neurology Cluster", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-01-07T00:00:00", "date_created": "2015-01-12T00:13:03", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 501, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 170, "avg_children": 62, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ISO19115CI", "name": "ISO 19115 Citation Information", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 573, "download_url": "media/ontologies/ISO19115CI/3/iso19115ci.owl", "submission_id": 3, "domain": null, "description": "Citation and responsible part ontology", "documentation": "https://github.com/ISO-TC211/GOM/blob/master/isotc211_GOM_harmonizedOntology/19115-1/2014/iso19115-1CitationAndResponsiblePartyInformation.owl", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-21T01:04:46", "date_created": "2017-07-21T01:04:46", "home_page": null, "version": "2014", "has_ontology_language": "OWL", "nb_classes": 23, "nb_individuals": 81, "nb_properties": 48, "max_depth": 1, "max_children": 15, "avg_children": 7, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "MSHFRE", "name": "Thesaurus Biomedical Francais/Anglais [French translation of MeSH]", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 744, "download_url": "media/ontologies/MSHFRE/9/mshfre.umls", "submission_id": 9, "domain": null, "description": "Thesaurus Biomedical Francais/Anglais (French translation of the Medical Subject Headings)", "documentation": "http://www.inserm.fr", "publication": "http://www.inserm.fr", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:47", "date_created": "2017-02-06T21:26:47", "home_page": "http://www.inserm.fr", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 28006, "nb_individuals": 0, "nb_properties": 6, "max_depth": 15, "max_children": 164, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ISO19115SRS", "name": "ISO 19115 Reference Systems", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 632, "download_url": "media/ontologies/ISO19115SRS/3/iso19115srs.owl", "submission_id": 3, "domain": null, "description": "ISO 19115 Spatial reference systems", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-18T01:04:26", "date_created": "2017-07-20T15:24:22", "home_page": null, "version": "2014", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ECSO", "name": "The Ecosystem Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 434, "download_url": "media/ontologies/ECSO/51/ecso.owl", "submission_id": 51, "domain": null, "description": "DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-14T00:00:00", "date_created": "2017-07-14T16:36:51", "home_page": null, "version": "0.9.1", "has_ontology_language": "OWL", "nb_classes": 2682, "nb_individuals": 174, "nb_properties": 78, "max_depth": 18, "max_children": 78, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "FDSAJFAHSJK", "name": "OWL_XML_Tool5", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 452, "download_url": "media/ontologies/FDSAJFAHSJK/1/fdsajfahsjk.owl", "submission_id": 1, "domain": null, "description": "dasf", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-04T00:00:00", "date_created": "2016-08-03T10:59:21", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 3, "nb_individuals": 3, "nb_properties": 0, "max_depth": 0, "max_children": 3, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SNOMEDCT", "name": "SNOMED CT", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 394, "download_url": "media/ontologies/SNOMEDCT/14/snomedct.umls", "submission_id": 14, "domain": null, "description": "SNOMED Clinical Terms", "documentation": "http://www.snomed.org", "publication": "http://www.snomed.org", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:39", "date_created": "2017-02-06T21:26:40", "home_page": "http://www.snomed.org", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 327128, "nb_individuals": 0, "nb_properties": 152, "max_depth": 28, "max_children": 2403, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "NIFSTD", "name": "Neuroscience Information Framework (NIF) Standard Ontology", "status": "Incoherent", "topics": null, "species": null, "submission": { "id": 401, "download_url": "media/ontologies/NIFSTD/23/nifstd.owl", "submission_id": 23, "domain": null, "description": "NIF Standard ontology (NIFSTD) is a core component of Neuroscience Information Framework (NIF) project (http://neuinfo.org), a semantically enhanced portal for accessing and integrating neuroscience data, tools and information. NIFSTD includes a set of modular ontologies that provide a comprehensive collection of terminologies to describe neuroscience data and resources.", "documentation": "https://github.com/SciCrunch/NIF-Ontology#documentation", "publication": "http://neuinfo.org/about/publications.shtm", "publications": null, "products": null, "taxon": null, "date_released": "2017-10-16T12:04:24", "date_created": "2017-10-16T13:02:45", "home_page": "http://ontology.neuinfo.org", "version": "3.0 - October 16, 2017", "has_ontology_language": "OWL", "nb_classes": 163312, "nb_individuals": 459, "nb_properties": 764, "max_depth": 37, "max_children": 17176, "avg_children": 5, "classifiable": true, "nb_inconsistent": 15743, "indexed": true, "md5sum": null } }, { "acronym": "MIM", "name": "Molecular Interaction Map", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 774, "download_url": "media/ontologies/MIM/3/mim.owl", "submission_id": 3, "domain": null, "description": "The Molecular Interaction Map (MIM) notation seeks to provide a standardized method to draw diagrams for bioregulatory networks with features similar to technical diagrams in other fields.\r\n\r\nThis vocabulary uses the term hierarchy from the Formal MIM Notation Specification. Where possible, Systems Biology Ontology (SBO) and Biological Pathway Exchange (BioPAX) terms and IRIs are used. If no SBO or BioPAX term is available, a new term and IRI are created.\r\n\r\nThis is currently only a partial implementation. Many elements still need to be added to cover the full the specification.", "documentation": "http://discover.nci.nih.gov/mim/formal_mim_spec.pdf", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-10-30T00:00:00", "date_created": "2014-10-30T18:23:20", "home_page": "http://discover.nci.nih.gov/mim/", "version": "10:30:2014 16:04", "has_ontology_language": "OWL", "nb_classes": 88, "nb_individuals": 0, "nb_properties": 96, "max_depth": 4, "max_children": 15, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "PTS", "name": "Pathway Terminology System", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 582, "download_url": "media/ontologies/PTS/1/pts.owl", "submission_id": 1, "domain": null, "description": "Pathwas terminology systems integrates biological Events and various Pathway types.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-21T00:00:00", "date_created": "2015-08-21T15:52:07", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 6623, "nb_individuals": 0, "nb_properties": 5, "max_depth": 15, "max_children": 258, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "SANJAY", "name": "Sanjay", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BRO_ACRONYM", "name": "Bro_Name", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 413, "download_url": "media/ontologies/BRO_ACRONYM/1/bro_acronym.owl", "submission_id": 1, "domain": null, "description": "Uploading ontology for the first time", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-14T00:00:00", "date_created": "2016-06-14T13:21:15", "home_page": null, "version": "3.1", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ISO19115ID", "name": "ISO 19115 Identification Information", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 646, "download_url": "media/ontologies/ISO19115ID/2/iso19115id.owl", "submission_id": 2, "domain": null, "description": "ISO 19115-1:2014 Identification Information Section for describing Geospatial Datasets", "documentation": "https://github.com/ISO-TC211/GOM", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-10T01:05:21", "date_created": "2017-07-10T01:05:21", "home_page": null, "version": "2006-07-01", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "BRIDG", "name": "Biomedical Research Integrated Domain Group Model", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 421, "download_url": "media/ontologies/BRIDG/1/bridg.owl", "submission_id": 1, "domain": null, "description": "The Biomedical Research Integrated Domain Group (BRIDG) Model is a collaborative effort engaging stakeholders from the Clinical Data Interchange Standards Consortium (CDISC), the HL7 Regulated Clinical Research Information Management Technical Committee (RCRIM TC), the National Cancer Institute (NCI) and its Cancer Biomedical Informatics Grid (caBIG®), and the US Food and Drug Administration (FDA). The BRIDG model is an instance of a Domain Analysis Model (DAM). The goal of the BRIDG Model is to produce a shared view of the dynamic and static semantics for the domain of protocol-driven research and its associated regulatory artifacts. This domain of interest is further defined as:\r\n\r\nProtocol-driven research and its associated regulatory artifacts: i.e. the data, organization, resources, rules, and processes involved in the formal assessment of the utility, impact, or other pharmacological, physiological, or psychological effects of a drug, procedure, process, or device on a human, animal, or other subject or substance plus all associated regulatory artifacts required for or derived from this effort, including data specifically associated with post-marketing adverse event reporting.\r\n\r\nThis OWL version of the BRIDG model is create by the National Cancer Institute (NCI). \r\n\r\nSource repository: https://ncisvn.nci.nih.gov/WebSVN/listing.php?repname=bridg-model&path=%2Ftrunk%2FModel+-+OWL%2F&", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-08-30T07:00:00", "date_created": "2012-09-04T20:57:02", "home_page": "http://www.bridgmodel.org/", "version": "3.2", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CCO", "name": "Cell Cycle Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 429, "download_url": "media/ontologies/CCO/9/cco.owl", "submission_id": 9, "domain": null, "description": "An application ontology integrating knowledge about the eukaryotic cell cycle.", "documentation": null, "publication": "http://genomebiology.com/2009/10/5/R58", "publications": null, "products": null, "taxon": null, "date_released": "2015-12-16T00:00:00", "date_created": "2015-12-16T08:32:30", "home_page": "http://www.semantic-systems-biology.org/apo/", "version": "2015", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "COP", "name": "Core Ontology of Phenotypes", "status": "Classified", "topics": [ "phenotype" ], "species": [], "submission": { "id": 4404, "download_url": "media/ontologies/COP/1/cop.owl", "submission_id": 1, "domain": null, "description": "COP is a core ontology, which can be used to specify phenotype algorithms as ontologies (Phenotype Algorithm Specification Ontology, PASO).", "documentation": null, "publication": "Uciteli, A; Beger, C; Kirsten, T; Meineke, FA; Herre, H: Ontological Modelling and Reasoning of Phenotypes. Proceedings of the Joint Ontology Workshops 2019; Graz; Austria; September 23-25; 2019.", "publications": null, "products": null, "taxon": null, "date_released": "2021-04-19T09:46:09.706750", "date_created": "2021-04-19T09:46:09.706736", "home_page": "https://github.com/Onto-Med/COP/tree/v0.2.0", "version": "v0.2.0", "has_ontology_language": "OWL", "nb_classes": 18, "nb_individuals": 0, "nb_properties": 2, "max_depth": 3, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RCD", "name": "Read Codes, Clinical Terms Version 3 (CTV3) ", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 443, "download_url": "media/ontologies/RCD/9/rcd.umls", "submission_id": 9, "domain": null, "description": "Clinical Terms Version 3 (CTV3) (Read Codes) (Q199): National Health Service National Coding and Classification Centre", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:21", "date_created": "2017-02-06T21:26:21", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 140065, "nb_individuals": 0, "nb_properties": 3, "max_depth": 17, "max_children": 162, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "InterNano", "name": "InterNano Nanomanufacturing Taxonomy", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 464, "download_url": "media/ontologies/InterNano/138/internano.owl", "submission_id": 138, "domain": null, "description": "The InterNano Taxonomy is a unique, custom-built terminology to describe the nanomanufacturing enterprise. This project is supported by the\r\nNational Science Foundation CMMI-1025020", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-04T01:04:57", "date_created": "2017-10-04T01:04:57", "home_page": "http://internano.org", "version": "1.4", "has_ontology_language": "OWL", "nb_classes": 371, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "OPE", "name": "Ontology of Physical Exercises", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 617, "download_url": "media/ontologies/OPE/6/ope.owl", "submission_id": 6, "domain": null, "description": "The Ontology of Physical Exercises (OPE) provides a reference for describing an exercise in terms of functional movements, engaged musculoskeletal system parts, related equipment or monitoring devices, intended health outcomes, as well as target ailments for which the exercise might be employed as a treatment or preventative measure. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-03-13T07:00:00", "date_created": "2013-03-22T06:57:20", "home_page": null, "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 634, "nb_individuals": 0, "nb_properties": 27, "max_depth": 8, "max_children": 103, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "APASTATISTICAL", "name": "APA Statistical Cluster", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 133, "download_url": "media/ontologies/APASTATISTICAL/1/apastatistical.owl", "submission_id": 1, "domain": null, "description": "APA Statistical Cluster", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-12-30T00:00:00", "date_created": "2015-01-12T00:57:10", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 140, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 87, "avg_children": 35, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "PROV", "name": "Superset of Provenance Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 563, "download_url": "media/ontologies/PROV/1/prov.owl", "submission_id": 1, "domain": null, "description": "PROV is a superset of PROV (the Provenance Ontology). The relationship between these two ontologies is described at\r\nhttp://www.w3.org/ns/prov", "documentation": "http://www.w3.org/TR/prov-o/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-04-30T07:00:00", "date_created": "2013-08-17T00:25:55", "home_page": "http://www.w3.org/TR/prov-o/", "version": "Recommendation version 2013-04-30", "has_ontology_language": "OWL", "nb_classes": 51, "nb_individuals": 16, "nb_properties": 187, "max_depth": 3, "max_children": 10, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ENTITY", "name": "ISO-15926-2_2003_entityMembership", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 371, "download_url": "media/ontologies/ENTITY/1/entity.owl", "submission_id": 1, "domain": null, "description": "Entity Membership", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T19:59:35", "home_page": null, "version": "Created 2008-07-14. Version 1.0.", "has_ontology_language": "OWL", "nb_classes": 203, "nb_individuals": 0, "nb_properties": 118, "max_depth": 9, "max_children": 28, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "H1_NMOABA_4_0", "name": "NeuroMorpho.Org Allen Brain Atlas ontology v.4.0", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 492, "download_url": "media/ontologies/H1_NMOABA_4_0/1/h1_nmoaba_4_0.owl", "submission_id": 1, "domain": null, "description": "Light version of the Allen Brain Atlas ontology that is customized for the NeuroMorpho.Org brain regions. This ontology instantiates 90% of rodent brain regions from NeuroMorpho.Org v5.2.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-09-13T07:00:00", "date_created": "2011-09-13T20:16:57", "home_page": "www.neuromorpho.org", "version": "4", "has_ontology_language": "OWL", "nb_classes": 663, "nb_individuals": 74, "nb_properties": 0, "max_depth": 9, "max_children": 17, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ISO19108TO", "name": "ISO 19108 Temporal Objects", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 728, "download_url": "media/ontologies/ISO19108TO/2/iso19108to.owl", "submission_id": 2, "domain": null, "description": "ISO 19108 Temporal Objects", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-17T01:04:36", "date_created": "2017-07-17T01:04:36", "home_page": null, "version": "2006-10-15", "has_ontology_language": "OWL", "nb_classes": 17, "nb_individuals": 0, "nb_properties": 27, "max_depth": 3, "max_children": 5, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "BE", "name": "Bioentities", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MSV", "name": "Metagenome Sample Vocabulary", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 350, "download_url": "media/ontologies/MSV/2/msv.owl", "submission_id": 2, "domain": null, "description": "An ontology for metagenome sample metadata. This ontology mainly defines predicates.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-09-09T00:00:00", "date_created": "2017-09-10T06:33:52", "home_page": "http://microbedb.jp", "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 649, "nb_individuals": 4, "nb_properties": 1052, "max_depth": 2, "max_children": 643, "avg_children": 162, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ISO19115EX", "name": "ISO 19115 Extent Information", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 198, "download_url": "media/ontologies/ISO19115EX/28/iso19115ex.owl", "submission_id": 28, "domain": null, "description": "ISO 19115 Extent Information", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-08-12T01:04:55", "date_created": "2017-08-12T01:04:55", "home_page": null, "version": "2014", "has_ontology_language": "OWL", "nb_classes": 14, "nb_individuals": 0, "nb_properties": 18, "max_depth": 1, "max_children": 9, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "OBOE-SBC", "name": "Santa Barbara Coastal Observation Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 528, "download_url": "media/ontologies/OBOE-SBC/1/oboe-sbc.owl", "submission_id": 1, "domain": null, "description": "Extensible Observation Ontology for the Santa Barbara Coastal Long Term Ecological Research project (SBC-LTER).\r\nOBOE SBC extends core concepts defined in the OBOE suite that are particular to the Santa Barbara Coastal Long Term Ecological Research project's data collection activities. These include specific measurement protocols, sites, etc. This is mean as a case study ontology for the Semtools project.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-08-12T07:00:00", "date_created": "2010-08-12T21:00:13", "home_page": "https://semtools.ecoinformatics.org/", "version": "Version 1.0", "has_ontology_language": "OWL", "nb_classes": 631, "nb_individuals": 0, "nb_properties": 32, "max_depth": 7, "max_children": 70, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "NEUMORE", "name": "Neural Motor Recovery Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 407, "download_url": "media/ontologies/NEUMORE/1/neumore.owl", "submission_id": 1, "domain": null, "description": "Neural Functional Motor Recovery Ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-07-28T07:00:00", "date_created": "2010-08-11T19:20:22", "home_page": "http://cis.usouthal.edu/~huang/", "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 33, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 9, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "DIKB", "name": "Drug Interaction Knowledge Base Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 476, "download_url": "media/ontologies/DIKB/5/dikb.owl", "submission_id": 5, "domain": null, "description": "An evidence taxonomy for pharmacologic studies that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were supported by a specific set of evidence.\r\n\r\nBoyce R, Collins C, Horn J, Kalet I. Computing with evidence Part I: A drug-mechanism evidence taxonomy oriented toward confidence assignment. J Biomed Inform. 2009 Dec;42(6):979-89. Epub 2009 May 10. PubMed PMID: 19435613; PubMed Central PMCID: PMC2783801. ", "documentation": "http://dbmi-icode-01.dbmi.pitt.edu/dikb-evidence/front-page.html", "publication": "http://www.ncbi.nlm.nih.gov/pubmed/19435613", "publications": null, "products": null, "taxon": null, "date_released": "2015-05-18T00:00:00", "date_created": "2015-05-19T11:53:32", "home_page": "http://dbmi-icode-01.dbmi.pitt.edu/dikb-evidence/front-page.html", "version": "Version 1.6", "has_ontology_language": "OWL", "nb_classes": 360, "nb_individuals": 10, "nb_properties": 140, "max_depth": 5, "max_children": 61, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ALLERGIDOC", "name": "Allergy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7244, "download_url": "media/ontologies/ALLERGIDOC/9/allergidoc.owl", "submission_id": 9, "domain": null, "description": "L'ontologie ALLERGIDOC représente la terminologie et les connaissances scientifiques, cliniques et généralistes du domaine de l'allergologie. Elle a été élaborée par Marcin Trzmielewski pour l'Unité d'Exploration des Allergies du CHU de Montpellier (référents : Docteur Davide Caimmi et Prof. Pascal Demoly), dans le cadre d'une thèse en sciences de l'information, de la communication et de la documentation à l'Université Paul Valéry Montpellier 3, financée par la Région Occitanie (France) entre 2019 et 2023 et encadrée par Prof. Céline Paganelli. L'ontologie a été élaborée dans une approche constructiviste, à partir d'une analyse des pratiques informationnelles des employés de l'unité d'allergologie et d'une analyse des documents que ces employés utilisent dans leur quotidien. \r\n\r\nLa version 3.0, élaborée après la thèse, comprend des modifications des versions 1.1 et 2.0 effectuées en février-mars 2025 par Marcin Trzmielewski (Laboratoire d'Etudes et de Recherches Appliquées en Sciences Sociales - LERASS), avec la contribution des étudiantes de la licence professionnelle en documentation : Anne Guerre, Nada Bouhsina, Sabrina Duc et Claire Casasso (Université de Montpellier Paul-Valéry). La version 3.0 contient également une nouvelle structuration au niveau des classes principales (facettes) et d'autres niveaux de profondeur classificatoire. L'analyse à facettes a été basée sur les catégories représentant les cibles informationnelles des professionnels d'allergologie et celles de la catégorie Descriptive Ontology for Linguistic and Cognitive Engineering (DOLCE). Les concepts, les termes et les relations qui composent l'ontologie sont issus des versions précédentes 1.1 et 2.0, des extractions terminologiques effectuées lors de l'élaboration de la version 1.0, comme des réunions de validation des versions 1.0 et 2.0. Ils proviennent également des systèmes d'organisation des connaissances existants : Ontology for General Medical Science, Information Artifact Ontology, MeSH, SNOMED, LOINC, Allergen Nomenclature, catalogues des allergènes ThermoFisher et Eurofins, site IMAIOS, taxonomies biologiques consultées sur Wikipédia, VIDAL, Gender, Sex, and Sexual Orientation Ontology, et classification d'Eckman.\r\nLa version 3.0 est actuellement en cours de validation par les professionnels d'allergologie.", "documentation": "https://hal.science/tel-04128883", "publication": "doi.org/10.5771/0943-7444-2024-3-151", "publications": null, "products": null, "taxon": null, "date_released": "2025-03-12T00:00:00", "date_created": "2025-03-12T08:56:56", "home_page": "https://allergo.infodocs.eu/ontologie/allergidoc3.0", "version": "3.0", "has_ontology_language": "OWL", "nb_classes": 1138, "nb_individuals": 33, "nb_properties": 3, "max_depth": 10, "max_children": 74, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GVP", "name": "Getty Vocabulary Program ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 520, "download_url": "media/ontologies/GVP/5/gvp.owl", "submission_id": 5, "domain": null, "description": "The AAT, TGN, ULAN, and CONA contain structured terminology for art and other material culture, archival materials, visual surrogates, and bibliographic materials. Compliant with international standards, they provide authoritative information for catalogers and researchers, and can be used to enhance access to databases and Web sites. The Getty Vocabularies are produced by the Getty Vocabulary Program (GVP) and grow through contributions.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-25T01:04:24", "date_created": "2017-10-25T01:04:24", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "hi", "name": "pizza", "status": "Unknown", "topics": [ "hi" ], "species": [ "hi" ], "submission": null }, { "acronym": "COMET", "name": "LinkML Common Metadata Elements and Terms", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6548, "download_url": "media/ontologies/COMET/3/comet.owl", "submission_id": 3, "domain": null, "description": "A collection of common metadata elements and terms for constructing LinkML Schemas and Data Models", "documentation": "https://linkml.io/linkml-common/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-04-11T18:02:44", "date_created": "2024-04-11T18:02:45", "home_page": "https://github.com/linkml/linkml-common", "version": null, "has_ontology_language": "OWL", "nb_classes": 164, "nb_individuals": 0, "nb_properties": 76, "max_depth": 9, "max_children": 41, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ESO", "name": "Emergency Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BOF", "name": "Biodiversity Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 733, "download_url": "media/ontologies/BOF/2/bof.owl", "submission_id": 2, "domain": null, "description": "An ontology of biodiversity of INPA", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-08-01T07:00:00", "date_created": "2013-07-12T03:51:23", "home_page": null, "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 189, "nb_individuals": 315, "nb_properties": 101, "max_depth": 6, "max_children": 22, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "VODANETHIOPIA_OR", "name": "ETHIOPIA_OUTPATIENT", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SOIL-PROF", "name": "Soil Profile classifiers", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CXSO", "name": "Cathexis Somatic Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8055, "download_url": "media/ontologies/CXSO/1/cxso.owl", "submission_id": 1, "domain": null, "description": "A formal vocabulary for representing body-based therapeutic experience in computational systems. The Cathexis Somatic Ontology (CSO) defines 29 anatomical zones, 20 sensation qualities, 7 primary affect systems, 19 brain regions, 8 functional networks, 5 ecological context layers, and 16 territories of human experience. Designed for digital mental health platforms, AI agent integration via Model Context Protocol (MCP), and clinical research. Grounded in constructed emotion theory (Barrett), predictive processing (Friston), primary affect systems (Panksepp), somatic markers (Damasio), neuropsychoanalysis (Solms), and distributed brain networks (Pessoa)., A formal vocabulary and relational schema for encoding body-based therapeutic experience computationally. Defines entity classes for anatomical zones, sensation qualities, neurobiological organization patterns (territories), therapeutic change mechanisms, brain regions, ecological layers, and intervention architectures, organized within a Markov blanket framework.", "documentation": "https://cathexis.health/ontology/cso/v1.1/context.jsonld", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-01T00:00:00", "date_created": "2026-03-21T00:00:00", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 17, "nb_individuals": 137, "nb_properties": 9, "max_depth": 2, "max_children": 16, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BCMO", "name": "Breast Cancer-Microbiome Ontology ", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "D3O", "name": "DSMZ Digital Diversity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6890, "download_url": "media/ontologies/D3O/3/d3o.owl", "submission_id": 3, "domain": null, "description": "The DSMZ Digital Diversity Ontology (D3O) is an ontology designed to standardize and integrate data related to microbial diversity and associated resources within the context of the DSMZ’s Digital Diversity Knowledge Graph. This ontology provides a structured framework to represent various aspects of microbial data, including taxonomic information, strain properties, cultivation conditions, and media links. D3O facilitates cross-referencing between internal DSMZ datasets and external biological resources, supporting enhanced data discovery, interoperability, and research in microbiology, genomics, and metabolomics.\r\n\r\nThe ontology includes both object properties, which link entities such as bacterial strains to external resources (e.g., literature references or media descriptions), and data properties, which associate entities with literal values (e.g., taxonomic identifiers, growth conditions). Designed for use in RDF-based knowledge graphs, D3O supports flexible integration with other life science ontologies, promoting consistency and reuse in the broader scientific community.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-09-24T01:09:21", "date_created": "2024-09-24T01:09:22", "home_page": "https://hub.dsmz.de/", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 294, "nb_individuals": 0, "nb_properties": 5, "max_depth": 4, "max_children": 22, "avg_children": 1, "classifiable": true, "nb_inconsistent": 1, "indexed": true, "md5sum": null } }, { "acronym": "MATERIALSMINE", "name": "MaterialsMine Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "HHS", "name": "CIDOnto", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "DIDEO", "name": "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6125, "download_url": "media/ontologies/DIDEO/54/dideo.owl", "submission_id": 54, "domain": "chemistry and biochemistry", "description": "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "dideo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/dideo.owl" } ], "taxon": null, "date_released": "2023-10-23T12:30:21.113193", "date_created": "2023-10-23T12:30:21.113201", "home_page": "https://github.com/DIDEO/DIDEO", "version": null, "has_ontology_language": "OWL", "nb_classes": 623, "nb_individuals": 24, "nb_properties": 108, "max_depth": 19, "max_children": 36, "avg_children": 10, "classifiable": true, "nb_inconsistent": 14, "indexed": true, "md5sum": "6c46f23a16bc7e6058fb7a4241b2e35b" } }, { "acronym": "DILIo", "name": "Drug-Induce Liver Injury (combined)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 373, "download_url": "media/ontologies/DILIo/1/dilio.owl", "submission_id": 1, "domain": null, "description": "A SNOMED subset of terms related to histological and clinical descriptions of Drug Induced Liver Injury (DILI). See Wang et al., \"A Unifying Ontology to Integrate Histological and Clinical Observations for Drug-Induce Liver Injury\" The American Journal of Pathology, 182:4,1180-1187 (2013). \r\n\r\nThis view contains both of the DILIo major branches; SNOMED:Body Structure and SNOMED:Clinical finding\r\n\r\nSome of the class names have been changed to correspond to the preferred names in SNOMED of 7/31/2011.\r\nIn DILIo publication -> in this file;\r\nDisorder of liver -> Disease of liver;\r\nFinding of general form of body -> General form of body - finding;\r\nFinding of size of liver -> size of liver - finding;\r\nSubacute necrosis of liver -> subacute hepatic necrosis", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-05-09T07:00:00", "date_created": "2013-05-09T20:17:00", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 200, "nb_individuals": 0, "nb_properties": 0, "max_depth": 9, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ANC", "name": "ANC", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BTO-PROVO", "name": "Brinell Test Ontology-PROVO", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "PRANAYTC", "name": "pranaytc", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "STRONG", "name": "Mental Stress Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "EDONTOLOGY", "name": "EmergencyDerpartmentOntology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7812, "download_url": "media/ontologies/EDONTOLOGY/2/edontology.owl", "submission_id": 2, "domain": null, "description": "This research work contributes in the field of Information logistics and ontology development in healthcare. An ontology based model that can fix information flow problems in the ward-round process of hospital unit. The ontology based model can be used to provide relevant information to the domain users according to their needs and demands. The ontology based model projects domain users profiling and describes their roles, information demands with competencies: skills, qualifications and experiences. The ontology based model will be implemented in OWL language that can be used in an application to support ward-round activities for achieving effective patient’s treatment process. For ontology development is concerned, different ontology development methodologies have been reviewed from literature review by the author to analyze the existing problems in the ward-round. This thesis incorporates Hybrid Methodology (HM) that helps to develop ontology based model that addresses information flow problems in ward-round. The proposed ontology based model is developed in web Ontology Language (OWL) supported tool protégé 4.0.2 that can be considered as foundation to develop a software product with the help of IT practitioners and developers to fulfill medical practitioner’s demands in ward-round’s context.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-13T00:00:00", "date_created": "2025-12-13T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 271, "nb_individuals": 413, "nb_properties": 247, "max_depth": 5, "max_children": 40, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FPLX", "name": "FamPlex", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ASSSE", "name": "11", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "HUSAT", "name": "HuBMAP Samples Added Terms", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "YUNPING", "name": "yunping", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "OPDRE", "name": "OPD Regitry Ethiopia", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "dlgkj", "name": "fdkgj", "status": "Unknown", "topics": [ "dfghdf" ], "species": [ "dkfjhg" ], "submission": null }, { "acronym": "PPLC", "name": "Placental Pathology Lesion Classification", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BPM", "name": "Bus Pariwisata Medan", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CIROBUADO", "name": "Ciona robusta Anatomy and Development Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "H.I", "name": "AyanAhmed", "status": "Unknown", "topics": [ "Haram Items" ], "species": [ "Products" ], "submission": null }, { "acronym": "vfdsad", "name": "sdf", "status": "Unknown", "topics": [ "sgresdgs" ], "species": [ "dsfbcx" ], "submission": null }, { "acronym": "ACVD_ONTOLOGY", "name": "Atherosclerotic Cerebrovascular Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6828, "download_url": "media/ontologies/ACVD_ONTOLOGY/4/acvd_ontology.owl", "submission_id": 4, "domain": null, "description": "The ontology describes the related aspects of atherosclerotic cerebrovascular disease, and provides a clear set of cross-lingual concepts and terms with an explicit hierarchical structure, helping scientific researchers to quickly retrieve relevant medical literature, assisting data scientists to efficiently identify relevant contents in electronic health records, and providing a clear domain framework for academic reference. The current ontology included 10 top-level classes, respectively clinical manifestation, comorbidity, complication, diagnosis, model of atherosclerotic cerebrovascular disease, pathogenesis, prevention, rehabilitation, risk factor, and treatment. Totally, there are 1715 concepts in the 11-level ontology, covering 4588 Chinese terms, 6617 English terms, and 972 definitions.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-06-08T00:00:00", "date_created": "2024-08-18T08:32:39", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 1719, "nb_individuals": 0, "nb_properties": 1, "max_depth": 11, "max_children": 93, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADICAP", "name": "Association pour le Développement de l'Informatique en Cytologie et Anatomie Pathologique", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7239, "download_url": "media/ontologies/ADICAP/1/adicap.owl", "submission_id": 1, "domain": null, "description": "Association pour le Développement de l'Informatique en Cytologie et Anatomie Pathologique (ADICAP)<br/>\r\n1. Description: Modes de prélèvement, types de technique, organes, lésions, topographies, grading<br/>\r\n2. Version: 2024-10<br/>\r\n3. Identifiant(s): 1.2.250.1.213.2.11<br/>\r\n4. Champs sémantique: Thésaurus<br/>\r\n5. Usage: Cytologie et Anatomo-pathologie<br/>\r\n6. Nombre de concepts: 9 511<br/>\r\n7. Domaine: Médical<br/>\r\n8. Utilisateur(s) cible(s): Editeurs, Professionnels de santé<br/>\r\n9. Langue(s): FRA<br/>\r\n10. Format(s): XLSX, OWL<br/>\r\n11. Site(s) de publication: https://esante.gouv.fr/<br/>\r\n12. Licence: LOv2<br/>\r\n13. Pratiques de gestion: Non<br/>\r\n14. Accord de transfert: Non<br/>\r\n15. Thème principal: Médical<br/>\r\n16. Publication: 02/10/2024<br/>", "documentation": "https://smt.esante.gouv.fr/wp-json/ans/terminologies/document?terminologyId=terminologie-adicap&fileName=CGTS_SEM_ADICAP_Fiche-detaillee_v1.3.pdf", "publication": "https://esante.gouv.fr/", "publications": null, "products": null, "taxon": null, "date_released": "2024-10-01T00:00:00", "date_created": "2025-03-11T16:27:17", "home_page": "https://smt.esante.gouv.fr/terminologie-adicap/", "version": "10-2024", "has_ontology_language": "OWL", "nb_classes": 9800, "nb_individuals": 385, "nb_properties": 71, "max_depth": 14, "max_children": 1852, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AEO", "name": "Anatomical Entity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7872, "download_url": "media/ontologies/AEO/9/aeo.owl", "submission_id": 9, "domain": "anatomy and development", "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "aeo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/aeo.owl" } ], "taxon": null, "date_released": "2026-01-12T17:42:14.853297", "date_created": "2026-01-12T17:42:14.853299", "home_page": "https://github.com/obophenotype/human-developmental-anatomy-ontology/", "version": null, "has_ontology_language": "OWL", "nb_classes": 430, "nb_individuals": 0, "nb_properties": 11, "max_depth": 12, "max_children": 183, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "6eee07018269289dde8abb08aae2ae2b" } }, { "acronym": "N-CDOH", "name": "Non Clinical Determinants of Health", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "RBMS", "name": "RBMS Controlled Vocabularies", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 704, "download_url": "media/ontologies/RBMS/1/rbms.skos", "submission_id": 1, "domain": null, "description": "These thesauri provide standardized vocabulary for retrieving special collections materials by form, genre, or by various physical characteristics that are typically of interest to researchers and special collections librarians, and for relating materials to individuals or corporate bodies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-16T00:00:00", "date_created": "2017-07-13T22:41:49", "home_page": "http://rbms.info/vocabularies/", "version": "1.0", "has_ontology_language": "SKOS", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "QIBO", "name": "Quantitative Imaging Biomarker Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 707, "download_url": "media/ontologies/QIBO/2/qibo.owl", "submission_id": 2, "domain": null, "description": "An ontology that describes various concepts in quantitative imaging biomarkers. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-10-06T07:00:00", "date_created": "2011-10-06T18:15:59", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "Python acronym", "name": "Python name", "status": "Unknown", "topics": [ "Python Topic" ], "species": [ "Python species" ], "submission": null }, { "acronym": "AION", "name": "AI Ontology (AION)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6380, "download_url": "media/ontologies/AION/1/aion.owl", "submission_id": 1, "domain": null, "description": "This ontology models classes and relationships describing Ensemble Learning, their classes, and subclasses.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-02-03T00:00:00", "date_created": "2024-02-03T22:34:53", "home_page": "https://bioportal.bioontology.org/ontologies/AION", "version": "2023-09-08", "has_ontology_language": "OWL", "nb_classes": 363, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 53, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIOPAX", "name": "BioPAX Level 3 ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7912, "download_url": "media/ontologies/BIOPAX/1/biopax.owl", "submission_id": 1, "domain": null, "description": "The goal of the BioPAX group is to develop a common exchange format for biological pathway data. More information is available at http://www.biopax.org. This ontology is freely available under the LGPL license", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2010-07-20T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "v1.0", "has_ontology_language": "OWL", "nb_classes": 69, "nb_individuals": 0, "nb_properties": 55, "max_depth": 5, "max_children": 15, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADMF", "name": "alzhaimer dessiese main factors", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BIOTOP", "name": "BioTop", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7913, "download_url": "media/ontologies/BIOTOP/4/biotop.owl", "submission_id": 4, "domain": null, "description": "Upper-Level ontology for Biology and Medicine. Compatible with BFO, DOLCE, and the UMLS Semantic Network, and the UMLS Semantic Network (mapping files available), BioTop Website:\nhttp://purl.org/biotop\n\n\nSee related articles at:\n\nhttp://www.google.com/search?q=Schulz+BioTop+site:www.ncbi.nlm.nih.gov/pmc/articles+ontology+OR+ontologies", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2012-04-24T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": "http://purl.org/biotop", "version": "v2012-04-24", "has_ontology_language": "OWL", "nb_classes": 390, "nb_individuals": 0, "nb_properties": 82, "max_depth": 15, "max_children": 25, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "KETO", "name": "Kerala Tourism Ontology", "status": "Unknown", "topics": [ "Tourism" ], "species": [ "Tourism" ], "submission": null }, { "acronym": "CODO", "name": "CODO: an Ontology for collection and analysis of COviD-19 data", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6652, "download_url": "media/ontologies/CODO/6/codo.owl", "submission_id": 6, "domain": null, "description": "The initial version, CODO ontology v1.0 to v1.3, encompasses pivotal features such as classes like patients, clinical findings, symptoms, and properties like relationships between patients, travel history, and test results. It facilitates tracking specific pandemic cases, detailing how patients may have been infected, and identifying potential contacts at risk due to their connection with the infected individual. CODO also enables monitoring of clinical tests, travel history, available resources, and actual needs like ICU beds and invasive ventilators. With capabilities for advanced analytics, contact tracing, trend studies, and growth projections based on daily COVID-19 data, CODO supports the organization and representation of COVID-19 data on a daily basis. It allows semantic querying and data retrieval and aids in behavior analysis of the disease and transmission routes.\r\n\r\nIn contrast, Version 1.4, also known as CODO_COVIDRO 1.4 or COVID-19 Drug and Risk Ontology (COViDRO), presents a formal model specifically designed to tackle the multifaceted challenges associated with COVID-19 treatment, risk factors, and drug interactions. The knowledge embedded in the COViDRO model is extracted from diverse medical literature and treatment guidelines provided by reputable organizations such as the World Health Organization (WHO), the National Institutes of Health (NIH), the Food and Drug Administration (FDA), and the Centers for Disease Control and Prevention (CDC). The model incorporates information on therapeutics, adverse effects, and drug interactions from authoritative medical literature, making a significant contribution to patient care, research, and public health strategies.\r\n\r\nCOViDRO, or COVID-19 Drug and Risk Ontology 1.4, seamlessly integrates into knowledge graph information systems or recommender systems. It assists healthcare professionals in suggesting appropriate treatments by considering a comprehensive set of factors, abbreviated as \"PRADiCT\" (Patient Risk factors, Adverse effects, Drug interaction, Clinical findings, and Treatment procedure). These factors encompass patient risk level, risk factors (such as underlying health conditions, age, immunocompromised state, and occupation), drug interactions, drug adverse effects, clinical findings (including diagnosis, signs, symptoms, and status), and treatment procedures.\r\n\r\nBy offering a standardized framework for organizing and integrating data from diverse sources like clinical trials, medical literature, and real-world patient data, COViDRO enhances informed decision-making, thereby elevating the quality of patient care. It stands as a patient-centric solution, facilitating COVID-19 treatment options and personalized care based on individual patient characteristics. \r\n\r\nCODO V1.5 extends the previous CODO V1.4 with the focus on COVID-19 Virus Genomics for representation of genomic sequence data. VGO model comprises 261 classes, 55 object properties, and 14 data properties. Designed to streamline the use and dissemination of COVID-19 genomic sequence data, VGO serves as a robust resource for researchers and healthcare professionals. It incorporates data from the Global Initiative on Sharing All Influenza Data (GISAID), which facilitates efficient querying and visualization of genomic data, thereby improving both accessibility and usability. VGO includes a variety of classes that represent COVID-19-related data such as variants, mutations, amino acids, genes, proteins, genome sequencing, samples, hosts, sampling strategies, and assembly methods. Furthermore, VGO supports automated reasoning, enhancing its functionality for in-depth analysis and interpretation. By integrating GISAID data into the VGO knowledge graph, the model not only enriches its conceptual representation but also optimizes the querying and visualization processes, making genomic data more accessible and usable for the scientific and medical communities.", "documentation": "https://w3id.org/codo", "publication": "https://www.isibang.ac.in/~bisu/covid19project.html", "publications": null, "products": null, "taxon": null, "date_released": "2023-07-26T00:00:00", "date_created": "2024-05-29T11:20:14", "home_page": "https://github.com/biswanathdutta/CODO", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 385, "nb_individuals": 767, "nb_properties": 214, "max_depth": 7, "max_children": 37, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "APAOCUEMPLOY", "name": "APA Occupational and Employment cluster", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 602, "download_url": "media/ontologies/APAOCUEMPLOY/1/apaocuemploy.owl", "submission_id": 1, "domain": null, "description": "APA Occupational and Employment Cluster", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-01-06T00:00:00", "date_created": "2015-01-12T00:44:42", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 448, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 155, "avg_children": 74, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "APRO", "name": "Ancient Poet Resource Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6266, "download_url": "media/ontologies/APRO/1/apro.owl", "submission_id": 1, "domain": null, "description": "APRO（Ancient Poet Resource Ontology）是一个旨在系统性地组织和描述与中国古代诗人及其作品相关信息的本体。本体覆盖了古代诗人的生平、作品、历史背景和相关事件，以及与其作品相关的情感和风格特征。通过集成历史、文学和文化研究的元素，APRO提供了一个丰富的框架，用于分析和探索中国古代诗歌的丰富性和复杂性。\r\n\r\n主要特点和组件包括：\r\n\r\n人物类：包含古代诗人的基本信息，如姓名、字、号、出生和逝世日期，以及他们的主要成就和生平事件。\r\n作品类：详细描述了诗人的主要作品，包括作品名称、创作时间、体裁、主题和风格。\r\n事件类：记录了与诗人和其作品相关的重要历史事件。\r\n情感类：涵盖了作品中表达的情感倾向和风格特征。\r\n资源类：涉及与诗人及其作品相关的各类资源，如文献、研究文章和教育材料。\r\n时间和地点类：详细说明了诗人活动的时间和地点，以及作品的创作背景。\r\nAPRO本体适用于文学研究者、历史学家、教育工作者以及对中国古代诗歌感兴趣的人士，用于教学、学术研究和文化传承。本体的设计充分考虑了易用性和扩展性，支持跨领域的查询和分析。\r\n\r\nAPRO (Ancient Poet Resource Ontology) is an ontology designed to systematically organize and describe information related to ancient Chinese poets and their works. The ontology encompasses the life, works, historical context, and related events of ancient poets, as well as emotional and stylistic characteristics associated with their works. Integrating elements of historical, literary, and cultural studies, APRO provides a rich framework for analyzing and exploring the richness and complexity of ancient Chinese poetry.\r\n\r\nKey features and components include:\r\n\r\nPerson Class: Contains basic information about ancient poets, such as their names, courtesy names, art names, birth and death dates, major achievements, and life events.\r\nWork Class: Details the main works of the poets, including the name of the work, time of creation, genre, theme, and style.\r\nEvent Class: Records significant historical events related to the poets and their works.\r\nEmotion Class: Covers the emotional tendencies and stylistic features expressed in the works.\r\nResource Class: Pertains to various resources associated with the poets and their works, such as literature, research papers, and educational materials.\r\nTime and Place Class: Specifies the times and places of the poets' activities, as well as the background of the creation of their works.\r\nThe APRO ontology is suitable for literary researchers, historians, educators, and anyone interested in ancient Chinese poetry, for use in teaching, academic research, and cultural heritage preservation. The design of the ontology takes into account ease of use and extensibility, supporting cross-disciplinary queries and analysis.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-15T00:00:00", "date_created": "2023-12-15T18:42:52", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 0, "nb_properties": 54, "max_depth": 2, "max_children": 7, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ETHIOPIADISEASES", "name": "EthiopiaDiseasesList", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BBO", "name": "Biomedical Burden Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7620, "download_url": "media/ontologies/BBO/3/bbo.owl", "submission_id": 3, "domain": null, "description": "The Biomedical Burden Ontology (BBO) is a BFO-aligned OWL ontology for representing and integrating burden-related aspects of patient experience in biomedicine. It models burden as an affective, appraisal-based process that links situations (e.g., symptom, treatment, disease-course, and side-effect processes) to their perceived impacts on goals and expectations, informed by predictive processing/active inference accounts of cognition. BBO reuses and extends MFO, MFOEM, OGMS, and CCO/IAO, and provides patterns to annotate questionnaire-based measurements (e.g., PETS, MTBQ, MDASI), enabling semantic interoperability, automated reasoning, and analysis of burden across research and clinical settings. , The Biomedical Burden Ontology is an ontology of biomedical burdens. It includes support for burden-related entities, such as treatment burden, symptom burden, and burden appraisals.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-28T01:00:19", "date_created": "2025-09-27T00:00:00", "home_page": "https://git.soton.ac.uk/meldb/ontologies/", "version": "2025-09-27", "has_ontology_language": "OWL", "nb_classes": 2192, "nb_individuals": 369, "nb_properties": 282, "max_depth": 13, "max_children": 57, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BCO", "name": "Biological Collections Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4685, "download_url": "media/ontologies/BCO/12/bco.owl", "submission_id": 12, "domain": "biodiversity collections", "description": "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "bco.owl", "ontology_purl": "http://purl.obolibrary.org/obo/bco.owl" } ], "taxon": null, "date_released": "2021-11-15T12:16:26.519946", "date_created": "2021-11-15T12:16:26.519969", "home_page": "https://github.com/tucotuco/bco", "version": null, "has_ontology_language": "OWL", "nb_classes": 254, "nb_individuals": 64, "nb_properties": 112, "max_depth": 31, "max_children": 39, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "75a0edb975d0954c16269bde4263203b" } }, { "acronym": "BERO", "name": "Biological and Environmental Research Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5587, "download_url": "media/ontologies/BERO/3/bero.owl", "submission_id": 3, "domain": null, "description": "Biological and Environmental Research Ontology (BERO) is an application ontology developed by the combination of many ontologies (base or subsets) namely : ChEBI, ECOCORE, EDAM, ENVO, GO, MeSH, MOP, NCBITaxon, NCIT, OBI, OMO, PATO, PO and TO.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-23T00:00:00", "date_created": "2022-12-23T08:03:39", "home_page": "https://github.com/berkeleybop/bero", "version": "2022-12-23", "has_ontology_language": "OWL", "nb_classes": 392307, "nb_individuals": 299, "nb_properties": 297, "max_depth": 42, "max_children": 29287, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BPFORMS", "name": "Ontology of chemically concrete, composable DNA, RNA, and protein residue and crosslinks", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BERVO", "name": "The Biological and Environmental Research Variable Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7839, "download_url": "media/ontologies/BERVO/5/bervo.owl", "submission_id": 5, "domain": null, "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None, \"An ontology of variables for earth system simulation, partially derived from the EcoSIM framework.\"", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-23T02:03:14", "date_created": "2025-12-22T00:00:00", "home_page": null, "version": "2025-12-22", "has_ontology_language": "OWL", "nb_classes": 2306, "nb_individuals": 1630, "nb_properties": 2, "max_depth": 5, "max_children": 340, "avg_children": 24, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COHSI2STUDY", "name": "cohsi2study", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5352, "download_url": "media/ontologies/COHSI2STUDY/27/cohsi2study.skos", "submission_id": 27, "domain": null, "description": "These ontologies are created under the CoHSI2 Study.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-11-26T00:00:00", "date_created": "2022-09-12T05:59:40", "home_page": null, "version": "0.2.8", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 83, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ROR", "name": "Research Organization Registry", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BDPM", "name": "Base de Données Publique des Médicaments", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BPT", "name": "Biological Pathway Taxonomy", "status": "Classified", "topics": [ "Cell signaling pathways" ], "species": [ "human", "mice", "rat" ], "submission": { "id": 4992, "download_url": "media/ontologies/BPT/2/bpt.obo", "submission_id": 2, "domain": null, "description": "Biological Pathway Taxonomy (BPT) - hierarchical taxonomy of cellular and molecular mechanisms, metabolic reactions, and diseases that can be shown as signaling pathways. BPT was created manually based on the Elsevier Pathway Collection available for public usage.\r\n\r\n There are 3 types of entities in BPT – pathway, group, and folder of pathways and groups. \r\n Group is the list of genes and proteins associated with biological function and diseases. \r\n Pathway is an interactive model of molecular interactions in human and mammalian cells described in the literature. Each model was reconstructed based on facts published in peer-reviewed journals, with manually quality control.\r\n\r\n BPT pathway entity includes several properties such as \r\n link to the model in Pathway Studio software which allows reading supported sentences from published articles and additional information about members. The link can be found among synonymes. List of members for each model can be provided by request. Property “network” describes maps without logical causal relationships between members to distinguish them from actual models of molecular mechanisms (“signaling”).\r\n\r\n The index folder contains all pathways and groups sorted alphabetically.", "documentation": "https://mammal-profservices.pathwaystudio.com/", "publication": "Nesterova, A.P., Klimov, E.A., Zharkova, M., Sozin, S., Sobolev, V., Ivanikova, N.V., Shkrob, M., Yuryev, A., 2020. Introduction, in: Disease Pathways. Elsevier, pp. 3–32. https://doi.org/10.1016/b978-0-12-817086-1.00001-4", "publications": null, "products": null, "taxon": null, "date_released": "2022-03-29T16:57:06.962743", "date_created": "2022-03-29T16:57:06.962723", "home_page": null, "version": "BPT.properties.2022", "has_ontology_language": "OBO", "nb_classes": 3875, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 438, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "building", "name": "Building and Sub Elements", "status": "Classified", "topics": [ "construction" ], "species": [ "wall base ceiling room floor building" ], "submission": { "id": 2680, "download_url": "media/ontologies/building/1/building.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-06-30T16:01:37.601619", "date_created": "2019-06-30T16:01:37.601597", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 39, "nb_individuals": 5, "nb_properties": 11, "max_depth": 3, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PATIENTPERSONAL", "name": "Patient ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "NDF-RT", "name": "National Drug File – Reference Terminology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 643, "download_url": "media/ontologies/NDF-RT/1/ndf-rt.owl", "submission_id": 1, "domain": null, "description": "Logically inferred version in OWL of the National Drug File – Reference Terminology (NDF-RT). NDF-RT is the terminology used by FDA and the FedMed collaboration to code these essential pharmacologic properties of medications: Mechanism of Action, Physiologic Effect, Structural Class. ", "documentation": "http://evs.nci.nih.gov/ftp1/NDF-RT/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-10-14T07:00:00", "date_created": "2012-01-20T06:47:26", "home_page": null, "version": "NDF-RT2 [Public Edition]", "has_ontology_language": "OWL", "nb_classes": 46046, "nb_individuals": 0, "nb_properties": 55, "max_depth": 13, "max_children": 5507, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DCO", "name": "Dispedia Core Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 688, "download_url": "media/ontologies/DCO/34/dco.owl", "submission_id": 34, "domain": null, "description": "Dispedia Core Ontology is a schema for information brokering and knowledge management in the complex field of rare diseases. On the one hand, the Dispedia schema uses semantic technologies to describe patients affected by rare diseases, and on the other hand, to record expertise concerning these particular diseases in machine-processable form. In addition to the differentiated attribution of facts to the individual need for information, Dispedia enables information brokering which adjusts to the type of recipient, its character as well as its personal attitude. The schema was initially geared to an exemplified disease, Amyotrophe Lateralsclerose (ALS).", "documentation": "http://www.dispedia.de/Site/Schema.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-03-05T18:11:07", "date_created": "2016-03-14T20:04:06", "home_page": "www.dispedia.de", "version": "0.7.0.0002", "has_ontology_language": "OWL", "nb_classes": 49, "nb_individuals": 0, "nb_properties": 71, "max_depth": 3, "max_children": 29, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "INRAETHES", "name": "INRAE Thesaurus", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7547, "download_url": "media/ontologies/INRAETHES/1/inraethes.skos", "submission_id": 1, "domain": null, "description": "INRAE Thesaurus contains more than 16,000 concepts relevant to domains covered by the National Research Institute for Agriculture, Food and the Environment. Concepts are described with terms in French (100%) and English (81%) terms, some having textual definitions and mappings to other semantic artifacts. The concepts are organized in 12 domains subdivided in thematic sections called micro-thesauri., Thésaurus ouvert et partagé couvrant les domaines de recherche d’INRAE. Il sert de référentiel au sein de l’institut pour indexer et annoter des documents, pages web, descriptions d’activités, jeux de données, à des fins de recherche ou d’analyse de l’information.", "documentation": "https://consultation.vocabulaires-ouverts.inrae.fr/navigateur/thesaurus-inrae/fr/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2021-03-17T00:00:00", "date_created": "2025-08-13T00:00:00", "home_page": null, "version": "2.4", "has_ontology_language": "SKOS", "nb_classes": 5, "nb_individuals": 17330, "nb_properties": 0, "max_depth": 1, "max_children": 5, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INSNAME", "name": "VODANAINSNAMES", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4373, "download_url": "media/ontologies/INSNAME/5/insname.skos", "submission_id": 5, "domain": null, "description": "This is the list of facilities participating in FAIRification of data.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-03-26T00:00:00", "date_created": "2021-03-30T05:33:23", "home_page": null, "version": "5", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 24, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EMRO", "name": "Emotion Response Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8112, "download_url": "media/ontologies/EMRO/8/emro.owl", "submission_id": 8, "domain": null, "description": "The Emotion Response Ontology represents emotions as behavioral responses to a situation or event, or internal process which evokes positive feelings, negative feelings, or surprise (i.e., emotional experiences).", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-24T00:00:00", "date_created": "2026-04-13T00:00:00", "home_page": null, "version": "2026-04-13", "has_ontology_language": "OWL", "nb_classes": 64, "nb_individuals": 23, "nb_properties": 31, "max_depth": 8, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SPRUCHE", "name": "All Germany ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "HHEARP", "name": "HHEAR Properties", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5678, "download_url": "media/ontologies/HHEARP/3/hhearp.owl", "submission_id": 3, "domain": null, "description": "An ontology of properties used to annotate the studies included in the Human Health Exposure Analysis Resource (HHEAR) knowledge graph; visit https://hheardatacenter.mssm.edu for more information regarding HHEAR.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-02-16T00:00:00", "date_created": "2023-02-16T16:49:05", "home_page": null, "version": "0.0.3", "has_ontology_language": "OWL", "nb_classes": 1944, "nb_individuals": 423, "nb_properties": 434, "max_depth": 13, "max_children": 118, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTONEO-CORE", "name": "OntONeo-core", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 64, "download_url": "media/ontologies/ONTONEO-CORE/1/ontoneo-core.owl", "submission_id": 1, "domain": null, "description": "Collect the basic information required to work with Obstetric and Neonatal care.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-05-23T00:00:00", "date_created": "2016-05-24T14:02:45", "home_page": "ontoneo.wordpress.com", "version": "Version 1.0", "has_ontology_language": "OWL", "nb_classes": 137, "nb_individuals": 0, "nb_properties": 8, "max_depth": 3, "max_children": 21, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "TDT", "name": "Tour Danau Toba", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "DDSS", "name": "Health_ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEQ", "name": "Sequence Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SNOMEDCTSPA", "name": "SNOMED CT SPA", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MEDRED", "name": "MedRed ontology: clinical data acquisition model", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AGROMOP", "name": "Control de Cacao", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3384, "download_url": "media/ontologies/AGROMOP/1/agromop.owl", "submission_id": 1, "domain": null, "description": "Ontologia con información relevante al cuidado del cacao de manera orgánica contra plagas y enfermedades.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-02-28T00:00:00", "date_created": "2020-02-28T22:24:16", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 58, "nb_properties": 5, "max_depth": 2, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIFDYS", "name": "Neuroscience Information Framework (NIF) Dysfunction Ontlogy", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 23, "download_url": "media/ontologies/NIFDYS/15/nifdys.owl", "submission_id": 15, "domain": null, "description": "This ontology contains the former BIRNLex-Disease, version 1.3.2. -- The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. It is built using the organizational framework provided by the foundational Basic Formal Ontology (BFO). It uses an abstract biomedical layer on top of that - OBO-UBO which has been constructed as a proposal to the OBO Foundry. This is meant to support creating a sharable view of core biomedical objects such as biomaterial_entity, and organismal_entity that all biomedical ontologies are likely to need and want to use with the same intended meaning. The BIRNLex biomaterial entities have already been factored to separately maintained ontology - BIRNLexBiomaterialEntity.owl which this BIRNLex-Main.owl file imports. The Ontology of Biomedical Investigation (OBI) is also imported and forms the foundation for the formal description of all experiment-related artifacts. The BIRNLex will serve as the basis for construction of a formal ontology for the multiscale investigation of neurological disease.", "documentation": "http://neuinfo.org/about/vocabularies.shtml", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-11T01:10:12", "date_created": "2017-10-11T01:10:12", "home_page": "http://neuinfo.org/", "version": "1.5 (December, 2012)", "has_ontology_language": "OWL", "nb_classes": 2751, "nb_individuals": 102, "nb_properties": 84, "max_depth": 14, "max_children": 924, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "PATAXO", "name": "Technical Taxonomies for Patents", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "FALL", "name": "MyOntoServiceFull_FallDetection", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 148, "download_url": "media/ontologies/FALL/1/fall.owl", "submission_id": 1, "domain": null, "description": "fall detection scenario", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-03-19T00:00:00", "date_created": "2015-03-19T13:18:52", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 51, "nb_individuals": 58, "nb_properties": 40, "max_depth": 2, "max_children": 35, "avg_children": 7, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ISO19115PR", "name": "ISO 19115 Codelists", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AHOL", "name": "Animal Health Ontology for Livestock", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1943, "download_url": "media/ontologies/AHOL/1/ahol.owl", "submission_id": 1, "domain": null, "description": "AHOL (Animal Health Ontology for Livestock) is an ontology of characteristics defining health issues of livestock in their environment (EOL) linked to their phenotypes (ATOL). AHOL aims to: - provide a reference ontology of health traits of farm animals for the international scientific and educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the AHOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-10-23T00:00:00", "date_created": "2018-10-23T11:46:11", "home_page": "http://147.99.156.182/ontologies/visualisation/ontologie/", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 339, "nb_individuals": 0, "nb_properties": 7, "max_depth": 6, "max_children": 79, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CST", "name": "Cancer Staging Terms", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ZAHRAHADDAD", "name": "ارتباطات", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MISINFO", "name": "COVID-19 misinformation", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CMOBET", "name": "agenbola", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "PROJ", "name": "Project ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5675, "download_url": "media/ontologies/PROJ/2/proj.owl", "submission_id": 2, "domain": null, "description": "The PROJECT ontology is a profile of PROV-O which is designed to enable publication of information describing projects, including research projects. It is not designed to support project management, though sub-activities are included. As far as possible PROJECT is intended to be domain-neutral, and it is expected that domains and applications will specialize or extend this ontology for more specific purposes.\r\n\r\nThe ontology gives terms to support the representation of:\r\n\r\nproject planning, funding, goals\r\nproject stakeholders and relationships\r\nproject activities and timeline\r\n\r\nPrimary documentation is at http://linked.data.gov.au/def/project", "documentation": "http://linked.data.gov.au/def/project", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-04-24T00:00:00", "date_created": "2021-09-16T10:06:51", "home_page": "http://linked.data.gov.au/def/project", "version": "2020", "has_ontology_language": "OWL", "nb_classes": 22, "nb_individuals": 10, "nb_properties": 39, "max_depth": 3, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ALLERGYDETECTOR", "name": "Allergy Detector II", "status": "Classified", "topics": null, "species": null, "submission": { "id": 740, "download_url": "media/ontologies/ALLERGYDETECTOR/1/allergydetector.owl", "submission_id": 1, "domain": null, "description": "Allergy Detection Ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-05-01T00:00:00", "date_created": "2015-05-02T00:22:05", "home_page": null, "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 161, "nb_properties": 20, "max_depth": 2, "max_children": 4, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PRE-CLINICAL", "name": "taimoor Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "VPS", "name": "vps windows", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CIPTO_JUNAEDY", "name": "Cipto Junaedy", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ASSAYNODE", "name": "Assaynode", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5623, "download_url": "media/ontologies/ASSAYNODE/2/assaynode.owl", "submission_id": 2, "domain": null, "description": "An ontology providing controlled vocabularies for Sequence Analysis and sequencing instrument model.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-01-18T00:00:00", "date_created": "2023-01-19T17:40:37", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 48, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 12, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BCIO", "name": "Behaviour Change Intervention Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7482, "download_url": "media/ontologies/BCIO/1/bcio.owl", "submission_id": 1, "domain": null, "description": "The Human Behaviour Change Project (HBCP) funded by the Wellcome Trust, and the Advancing Prevention Research in Cancer through Ontology Tools (APRICOT) Project funded by the US National Institutes of Health, are developing the Behaviour Change Intervention Ontology and associated tools and resources to be used in reporting research; linking datasets and synthesising evidence; and AI/machine learning algorithms to predict intervention outcomes in novel scenarios.\r\n\r\nThe overall aim of these projects is to automate evidence searching, synthesis and interpretation to rapidly address questions from policy-makers, practitioners and others to answer ‘What works, compared with what, how well, with what exposure, with what behaviours (for how long), for whom, in what settings and why?’. To achieve this, ontologies can help structure evidence, i.e., link evidence with a shared formal description of classes and relationships capturing domain knowledge in order to enable aggregation and semantic querying. We are developing and maintaining the Behaviour Change Intervention Ontology (BCIO) to do this.", "documentation": "https://wellcomeopenresearch.org/gateways/humanbehaviourchange/about", "publication": "['https://doi.org/10.12688/wellcomeopenres.21252.2']", "publications": null, "products": null, "taxon": null, "date_released": "2025-07-09T00:00:00", "date_created": "2025-07-09T00:00:00", "home_page": "https://www.humanbehaviourchange.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 2524, "nb_individuals": 0, "nb_properties": 49, "max_depth": 13, "max_children": 206, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TEST_IDKWHATIMDO", "name": "Tanya ", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CARESSES", "name": "CARESSES Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7914, "download_url": "media/ontologies/CARESSES/1/caresses.owl", "submission_id": 1, "domain": null, "description": "The CARESSES Ontology encodes guidelines defined by experts in Transcultural Nursing, with the aim of offering a specific tool for endowing social assistive robots (assisting older adults) with cultural competence.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2019-06-10T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 99, "nb_individuals": 0, "nb_properties": 62, "max_depth": 5, "max_children": 18, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HIVMT", "name": "HIVMutation", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5504, "download_url": "media/ontologies/HIVMT/6/hivmt.owl", "submission_id": 6, "domain": null, "description": "This is an ontology about the mutations Of HIV1 and the relations between them and the clinical practices. And it has imported the main ontology: https://bioportal.bioontology.org/ontologies/HIVO004. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-09-23T00:00:00", "date_created": "2020-11-06T00:19:40", "home_page": "https://blog.51.ca/u-345129/", "version": "01", "has_ontology_language": "OWL", "nb_classes": 161, "nb_individuals": 1, "nb_properties": 31, "max_depth": 3, "max_children": 93, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PICO", "name": "Pathogen-related Informed Consent Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "APADISORDERS", "name": "Disorders cluster", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 90, "download_url": "media/ontologies/APADISORDERS/1/apadisorders.owl", "submission_id": 1, "domain": null, "description": "APA Disorders cluster, owls loaded from urls.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-01-07T00:00:00", "date_created": "2015-01-11T21:52:39", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 822, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 326, "avg_children": 91, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "OCDM", "name": "Ontology of Craniofacial Development and Malformation", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 131, "download_url": "media/ontologies/OCDM/4/ocdm.owl", "submission_id": 4, "domain": null, "description": "The Ontology of Craniofacial Development and Malformation (OCDM) is a mechanism for representing knowledge about craniofacial development and malformation, and for using that knowledge to facilitate integrating craniofacial data obtained via multiple techniques from multiple labs and at multiple levels of granularity. The OCDM is a project of the NIDCR-sponsored FaceBase Consortium, whose goal is to promote and enable research into the genetic and epigenetic causes of specific craniofacial abnormalities through the provision of publicly accessible, integrated craniofacial data. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-18T01:07:19", "date_created": "2017-07-18T01:07:19", "home_page": "https://www.facebase.org/ocdm/", "version": "1.8", "has_ontology_language": "OWL", "nb_classes": 26, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 4, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "BCS7", "name": "Breast Cancer Staging - 7th Edition", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BCS8", "name": "Breast Cancer Staging - 8th Edition", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SIMON", "name": "Simple Measurement Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CARO", "name": "Common Anatomy Reference Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5727, "download_url": "media/ontologies/CARO/17/caro.owl", "submission_id": 17, "domain": "anatomy and development", "description": "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "caro.owl", "ontology_purl": "http://purl.obolibrary.org/obo/caro.owl" } ], "taxon": null, "date_released": "2023-03-20T12:00:28.008272", "date_created": "2023-03-20T12:00:28.008287", "home_page": "https://github.com/obophenotype/caro/", "version": null, "has_ontology_language": "OWL", "nb_classes": 721, "nb_individuals": 0, "nb_properties": 158, "max_depth": 15, "max_children": 16, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "6fcf2fe3754015c90eb1b02386ab2e10" } }, { "acronym": "CATALOG-THEMES", "name": "Catalog Themes", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CCCNO", "name": "CCC Nursing Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 523, "download_url": "media/ontologies/CCCNO/1/cccno.owl", "submission_id": 1, "domain": null, "description": "This is nursing diagnosis ontology of Clinical Care Classification", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-10-14T00:00:00", "date_created": "2013-10-14T18:13:35", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 207, "nb_individuals": 0, "nb_properties": 1, "max_depth": 4, "max_children": 17, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PRIDE", "name": "PRIDE Controlled Vocabulary", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ISO-ANNOTATIONS", "name": "ISO-15926-2_2003_annotations", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 107, "download_url": "media/ontologies/ISO-ANNOTATIONS/1/iso-annotations.owl", "submission_id": 1, "domain": null, "description": "Oil and Gas Annotations", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-09T00:00:00", "date_created": "2016-01-07T19:40:37", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 203, "nb_individuals": 0, "nb_properties": 116, "max_depth": 9, "max_children": 28, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "INTO", "name": "Indian Terrorism Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4615, "download_url": "media/ontologies/INTO/1/into.owl", "submission_id": 1, "domain": null, "description": "Creating the largest comprehensive knowledge base of terrorism and related activities, people and agencies involved, and extremist movements; and providing a platform to the society, the government, and the military personnel in order to combat the evolving threat of the global menace of terrorism.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-07T00:00:00", "date_created": "2021-06-07T18:00:22", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 261, "nb_individuals": 929, "nb_properties": 22, "max_depth": 8, "max_children": 16, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIFSUBCELL", "name": "Neuroscience Information Framework (NIF) Subcellular Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 384, "download_url": "media/ontologies/NIFSUBCELL/1/nifsubcell.owl", "submission_id": 1, "domain": null, "description": "http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Subcellular.owl", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-05-31T07:00:00", "date_created": "2012-07-27T22:30:28", "home_page": null, "version": "1.3 (May 2012)", "has_ontology_language": "OWL", "nb_classes": 2801, "nb_individuals": 102, "nb_properties": 87, "max_depth": 14, "max_children": 936, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "MERA", "name": "Medical Educational Resource Aggregator", "status": "Classified", "topics": null, "species": null, "submission": { "id": 498, "download_url": "media/ontologies/MERA/1/mera.owl", "submission_id": 1, "domain": null, "description": "The educational resource ontology is designed in order to provide structure to resources aggregated by the educational resource aggregator.\r\nThe aim of the educational resource aggregator is to harvest educational resources from 3rd party repositories, present these to the medical expert for annotation and rating, and output the results of the annotation (together with resource metadata) to the CARRE public RDF repository.\r\nThe main parts of this aggregator are: the Resource Retriever, the Resource Rating, the Resource Metadata Processing, and the User Application.\r\nThe educational metadata involve the Resource Metadata processing module.This module is a combination of 3 services that collect data per article, making multiple SPARQL requests to enrich the data and finally store it as a unique identified resource into the local datastore. Then data is transformed into RDF triples in order to be inserted to CARRE educational repository.\r\nThe ontology is developed using the Protégé v5.0 , a free, open-source ontology editor from the Stanford University. The ontology is available on CARRE rdf repository among the other ontologies. CARRE url : http://carre.kmi.open.ac.uk/ontology/educational.owl", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-26T00:00:00", "date_created": "2015-04-26T06:13:32", "home_page": "https://edu.carre-project.eu", "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 0, "nb_properties": 32, "max_depth": 0, "max_children": 5, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MISO", "name": "Microbial Isolation Source Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AHSO", "name": "Animal Health Surveillance Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1706, "download_url": "media/ontologies/AHSO/1/ahso.owl", "submission_id": 1, "domain": null, "description": "(Work in progress - please contact ahso@datadrivensurveillance.org before using this ontology)\r\n\r\nThis is an ontology for health surveillance, assuming that surveillance data is recorded at three main levels:\r\n\r\nSAMPLE data - data about specific collected samples; OBSERVATIONS, which can aggregate several samples; and OBSERVATIONAL CONTEXT, which is the context in which the observations were made (for instance clinical observation, surveillance sampling, etc). \r\n\r\nHEALTH EVENT is the occurrence in the real World to be modeled. This occurrence is an abstract concept, as it generally cannot be determined what are its boundaries in time, space, or population units. \r\n\r\nWe assume that several OBSERVATIONS are derived from each health event, and recorded in the same or different databases - for instance clinical journal, laboratory database, abattoir. At the same time or not. \r\n\r\nAHSO attempts to model these time specific observations. The ontology is focused on the modeling of the animal and health information connected to a single observation, made at a specific point on time. All the information recorded is relative to that specific point in time.\r\n\r\nFor instance, an animal belongs to a herd, which belongs to an owner, AT THE TIME OF THE OBSERVATION. We do not attempt to model how that animal changed herds on time. Similarly, we do not model clinical progression. It is up to those using the data to create definitions of when two observations should be connected to the same event.", "documentation": "https://github.com/SVA-SE/AHSO", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-07-30T00:00:00", "date_created": "2018-07-31T06:29:33", "home_page": "http://datadrivensurveillance.org/ahso", "version": "0.1.0", "has_ontology_language": "OWL", "nb_classes": 38, "nb_individuals": 0, "nb_properties": 31, "max_depth": 4, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AISM", "name": "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7953, "download_url": "media/ontologies/AISM/22/aism.owl", "submission_id": 22, "domain": "anatomy and development", "description": "The AISM contains terms used in insect biodiversity research for describing structures of the exoskeleton and the skeletomuscular system. It aims to serve as the basic backbone of generalized terms to be expanded with order-specific terminology.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "aism.owl", "ontology_purl": "http://purl.obolibrary.org/obo/aism.owl" }, { "id": "aism.obo", "ontology_purl": "http://purl.obolibrary.org/obo/aism.obo" }, { "id": "aism.json", "ontology_purl": "http://purl.obolibrary.org/obo/aism.json" } ], "taxon": null, "date_released": "2026-02-16T12:00:21.035845", "date_created": "2026-02-16T12:00:21.035850", "home_page": "https://github.com/insect-morphology/aism", "version": null, "has_ontology_language": "OWL", "nb_classes": 8614, "nb_individuals": 57, "nb_properties": 316, "max_depth": 35, "max_children": 190, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "903fb893500883d2c4b610fa98d07a32" } }, { "acronym": "MESH", "name": "Medical Subject Headings", "status": "Classified", "topics": null, "species": null, "submission": { "id": 316, "download_url": "media/ontologies/MESH/13/mesh.umls", "submission_id": 13, "domain": null, "description": "Medical Subject Headings (MeSH);National Library of Medicine; 2011", "documentation": "http://www.nlm.nih.gov/mesh/meshhome.html", "publication": "http://www.nlm.nih.gov/mesh/meshhome.html", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:54", "date_created": "2017-02-06T21:25:55", "home_page": "http://www.nlm.nih.gov/mesh/meshhome.html", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 265414, "nb_individuals": 0, "nb_properties": null, "max_depth": 15, "max_children": null, "avg_children": null, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO19115CON", "name": "ISO 19115 Constraints Information", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "HENECON", "name": "Head and Neck Cancer Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5753, "download_url": "media/ontologies/HENECON/1/henecon.owl", "submission_id": 1, "domain": null, "description": "HeNeCOn (Head and Neck Cancer Ontology) is the first ontology specifically focused on the Head and Neck Cancer (HNC) domain. It provides a clinically reliable data model for HNC processes during all phases of the disease: prognosis, treatment, and follow-up. The ontology is established based on an annotated dataset to provide formal reference descriptions, contains 170 clinical variables organized into a taxonomy, and is expanded and mapped to formalize and integrate multiple databases into the HeNeCOn ontology. The outcomes of this iterative process were reviewed and validated by clinicians and statisticians. HeNeCOn, with roughly 500 classes, is a very specific ontology which includes a taxonomy with a hierarchical structure, semantic definitions of 283 medical terms and detailed relations between them, which makes it a reference data model. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-04-14T00:00:00", "date_created": "2023-03-21T12:22:36", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 1933, "nb_individuals": 1472, "nb_properties": 0, "max_depth": 6, "max_children": 81, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "METABUS", "name": "metaBUS controlled vocabulary for organizational and applied psychology research", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6417, "download_url": "media/ontologies/METABUS/18/metabus.owl", "submission_id": 18, "domain": null, "description": "The metaBUS hierarchical taxonomy of ~5,000 constructs studied in applied psychology, organizational behavior, and human resource management.", "documentation": "http://www.sciencedirect.com/science/article/pii/S1053482216300675", "publication": "http://www.metabus.org/publications", "publications": null, "products": null, "taxon": null, "date_released": "2024-01-31T00:00:00", "date_created": "2024-02-18T15:07:36", "home_page": "http://www.metabus.org", "version": "0.2.4", "has_ontology_language": "OWL", "nb_classes": 5184, "nb_individuals": 0, "nb_properties": 0, "max_depth": 13, "max_children": 207, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TMO", "name": "Translational Medicine Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 11, "download_url": "media/ontologies/TMO/13/tmo.owl", "submission_id": 13, "domain": null, "description": "This project focuses on the development of a high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research, hypothesis management, experimental studies, compounds, formulation, drug development, market size, competitive data, population data, etc. to be brought together. This would enable scientists to answer new questions, and to answer existing scientific questions more quickly. This will help pharmaceutical companies to model patient-centric information, which is essential for the tailoring of drugs, and for early detection of compounds that may have sub-optimal safety profiles. The ontology should link to existing publicly available domain ontologies.", "documentation": "https://github.com/micheldumontier/translationalmedicineontology", "publication": "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102889/", "publications": null, "products": null, "taxon": null, "date_released": "2016-05-17T01:27:01", "date_created": "2016-05-17T01:27:01", "home_page": "http://esw.w3.org/HCLSIG/PharmaOntology", "version": "1.0.2", "has_ontology_language": "OWL", "nb_classes": 225, "nb_individuals": 15, "nb_properties": 22, "max_depth": 5, "max_children": 14, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ONSTR", "name": "Ontology for Newborn Screening Follow-up and Translational Research", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 488, "download_url": "media/ontologies/ONSTR/5/onstr.owl", "submission_id": 5, "domain": null, "description": "Ontology for Newborn Screening Follow-up and Translational Research (ONSTR) is an application ontology covering the domain of newborn screening, follow-up and translational research pertaining to patients diagnosed with inheritable and congenital diseases mainly identified through newborn dried blood spot screening. \r\nONSTR is a central component of the project Newborn Screening Follow-up Data Integration Collaborative (NBSDC).\r\n\r\nONSTR uses the Basic Formal Ontology v2 (BFO2, v2012-07-20) as top-level ontology and extends the classes imported from OBO Foundry ontologies and candidate ontologies.\r\n\r\nFor latest release notes please see: \r\nhttp://onstr.googlecode.com/svn/tags/currentRelease/2013-05-02/\r\n\r\nNBSDC project page: https://nbsdc.org (under construction).\r\n\r\n", "documentation": "http://onstr.googlecode.com/svn/docs/", "publication": "https://nbsdc.org/publications.php", "publications": null, "products": null, "taxon": null, "date_released": "2014-09-03T00:00:00", "date_created": "2014-09-04T13:42:34", "home_page": "http://code.google.com/p/onstr/", "version": "0.4", "has_ontology_language": "OWL", "nb_classes": 1865, "nb_individuals": 83, "nb_properties": 48, "max_depth": 34, "max_children": 25, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "HCODONONT", "name": "HGeneCodonOntology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 235, "download_url": "media/ontologies/HCODONONT/4/hcodonont.owl", "submission_id": 4, "domain": null, "description": "This ontology contains the information of the frequency of usage and the relative frequency of usage of Human Gene Codons, to be used to the operations by The Project Of HIV Ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-09-02T00:00:00", "date_created": "2016-09-02T22:21:19", "home_page": "http://blog.51.ca/u-345129/", "version": "2", "has_ontology_language": "OWL", "nb_classes": 98, "nb_individuals": 0, "nb_properties": 2, "max_depth": 1, "max_children": 94, "avg_children": 48, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "HMIS033B", "name": "HMIS 033", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CGBOARD", "name": "Cg Board 10th Time Table 2019", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "HIVGENETICS", "name": "HIVGenetics", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "UP", "name": "UP Board Exam Date Sheet 2019", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BODA", "name": "Botryllus schlosseri Anatomy and Development Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BTSE", "name": "Bussines Travel Singapore And Euro", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ETH_ANC", "name": "ETH_ANC", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "OPD-NAMBOBI", "name": "SELECTED OTHER PRIORITY DISEASES UNDER IDSR (INTEGRATED DISEASE SURVEILLANCE AND RESPONSES)", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "OPP", "name": "Obat Pembesar Penis", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "KIOSASLIQQ", "name": "belalang", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "KONTES", "name": "kontes seo", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "NIDHIAGARWAL", "name": "nidhiagarwal", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BRAIN-COF", "name": "Computational Ontology Framework for Brain Profiles", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6522, "download_url": "media/ontologies/BRAIN-COF/2/brain-cof.owl", "submission_id": 2, "domain": null, "description": "BRAIN-COF is an ontology for representing neuroanatomical concepts aligned with the Desikan–Killiany–Tourville (DKT) brain atlas. Using hierarchical relationships, our ontology explicitly encodes a priori neuroanatomical relationships amongst brain regions. Brain-COF implements computationally efficient calculation of volumetric deviation indicative of disease pathology.", "documentation": "https://github.com/martindyrba/CompOntoVisFramework/tree/master", "publication": "http://dx.doi.org/10.1007/978-3-658-44037-4_43", "publications": null, "products": null, "taxon": null, "date_released": "2024-04-08T18:00:30", "date_created": "2024-04-08T18:00:31", "home_page": "https://explaination.net/", "version": "3", "has_ontology_language": "OWL", "nb_classes": 125, "nb_individuals": 0, "nb_properties": 2, "max_depth": 5, "max_children": 10, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BT-ONTOLOGY", "name": "BrainTeaser Ontology (BTO)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6770, "download_url": "media/ontologies/BT-ONTOLOGY/3/bt-ontology.owl", "submission_id": 3, "domain": null, "description": "BrainTeaser Ontology (BTO) whose purpose is to jointly model both Amyotrophic Lateral Sclerosis (ALS) and Multiple Sclerosis (MS).\r\n\r\nThe BTO serves multiple purposes:\r\n\r\n- to provide a unified and comprehensive conceptual view about ALS and MS, which are typically dealt with separately, allowing us to coherently integrate the data coming from the different medical partners in the project;\r\n- to seamlessly represent both retrospective data and prospective data, produced during the lifetime of BRAINTEASER\r\n- to allow for sharing and re-using the BRAINTEASER datasets according to Open Science and FAIR principles.\r\n\r\nFor more details, visit the BTO documentation page: https://brainteaser.dei.unipd.it/ontology/", "documentation": "https://brainteaser.dei.unipd.it/ontology/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-07-22T01:00:44", "date_created": "2024-07-22T01:00:48", "home_page": "https://brainteaser.dei.unipd.it/ontology/", "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 180, "nb_individuals": 816, "nb_properties": 68, "max_depth": 5, "max_children": 42, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PE-O", "name": "Pre-eclampsia Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 78, "download_url": "media/ontologies/PE-O/3/pe-o.owl", "submission_id": 3, "domain": null, "description": "The PEO incorporates a wide range of key concepts and terms of PE from clinical and biomedical research in structuring the knowledge base that is specific to PE.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-30T00:00:00", "date_created": "2016-07-02T01:14:15", "home_page": null, "version": "1.1.2", "has_ontology_language": "OWL", "nb_classes": 1164, "nb_individuals": 0, "nb_properties": 13, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 21, "indexed": true, "md5sum": null } }, { "acronym": "tfernandes", "name": "Thiago", "status": "Unknown", "topics": [], "species": [ "Aspergillus" ], "submission": null }, { "acronym": "MTO", "name": "MyTestOntology", "status": "Unknown", "topics": [ "TestTopic" ], "species": [ "TestSpecies" ], "submission": null }, { "acronym": "CARELEX", "name": "Content Archive Resource Exchange Lexicon", "status": "Classified", "topics": null, "species": null, "submission": { "id": 769, "download_url": "media/ontologies/CARELEX/43/carelex.owl", "submission_id": 43, "domain": null, "description": "Contains controlled vocabulary terms from National Cancer Institute used to classify clinical trial electronic content (documents, images, etc). A Content model contains content classification categories (classes) and metadata properties (data properties). Data properties should be assigned to each Content Type. This model has been published as part of the new OASIS eTMF Standard, a draft specification available at: http://oasis-open.org/committees/etmf. CareLex is a non-profit organization formed to promote eClinical application and content interoperability for the life sciences and healthcare industries. For more info go to www.CareLex.Org", "documentation": "http://carelex.org/publications/", "publication": "http://carelex.org/publications/", "publications": null, "products": null, "taxon": null, "date_released": "2016-02-13T02:00:49", "date_created": "2016-02-13T02:00:49", "home_page": "http://www.carelex.org", "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 322, "nb_individuals": 0, "nb_properties": 35, "max_depth": 4, "max_children": 29, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CCF", "name": "Human Reference Atlas Common Coordinate Framework Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6678, "download_url": "media/ontologies/CCF/16/ccf.owl", "submission_id": 16, "domain": null, "description": "The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA.", "documentation": "https://hubmapconsortium.github.io/ccf/pages/ccf-ontology.html", "publication": "https://hubmapconsortium.github.io/ccf/", "publications": null, "products": null, "taxon": null, "date_released": "2024-06-14T00:00:00", "date_created": "2024-06-14T18:30:58", "home_page": "https://lod.humanatlas.io/vocab/ccf/latest", "version": "3.0.0", "has_ontology_language": "OWL", "nb_classes": 41, "nb_individuals": 9, "nb_properties": 3, "max_depth": 2, "max_children": 21, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADCAD", "name": "Arctic Data Center Academic Disciplines Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4779, "download_url": "media/ontologies/ADCAD/1/adcad.owl", "submission_id": 1, "domain": null, "description": "Ontology to support disciplinary annotation of datasets housed at the Arctic Data Center (https://arcticdata.io)", "documentation": "https://github.com/NCEAS/adc-disciplines", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-12-16T00:00:00", "date_created": "2021-12-18T00:25:35", "home_page": "https://github.com/NCEAS/adc-disciplines", "version": "Version 1.0.0", "has_ontology_language": "OWL", "nb_classes": 67, "nb_individuals": 0, "nb_properties": 0, "max_depth": 7, "max_children": 19, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CDMONTO", "name": "Common Diabetes Medications Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7483, "download_url": "media/ontologies/CDMONTO/2/cdmonto.owl", "submission_id": 2, "domain": null, "description": "The Common Diabetes Medications Ontology (CDMOnto) is an ontology-based decision support system that has been developed with the objective of providing appropriate treatment suggestions for diabetic patients. The CDMOnto Ontology serves as a foundation for shared semantics, domain-specific, standard, and interoperable knowledge pertinent to common diabetes medications. It encompasses the knowledge of diabetes medications and offers a unified terminology that can be disseminated and processed by medical professionals, pharmacists, and diabetic patients.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-07-09T00:00:00", "date_created": "2025-07-09T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 302, "nb_individuals": 84, "nb_properties": 14, "max_depth": 7, "max_children": 37, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANA-UG", "name": "VODANA-Uganda", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CHO", "name": "ChemoOnto", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6249, "download_url": "media/ontologies/CHO/1/cho.owl", "submission_id": 1, "domain": null, "description": "ChemoOnto, an ontology to qualify the course of chemotherapies", "documentation": "https://github.com/TeamHeka/ChemoOnto", "publication": "https://www.iscb.org/ismbeccb2023-programme/tracks/bio-ontologies", "publications": null, "products": null, "taxon": null, "date_released": "2023-12-06T00:00:00", "date_created": "2023-12-06T18:39:43", "home_page": "https://team.inria.fr/heka/team-members/rogier/", "version": "Version: 1.0.1\nDate: Dec 12, 2024\nAuthor: Alice Rogier, Inria Paris, CRC (Inserm, Univ. Paris-Cité)\nLicence: MIT License", "has_ontology_language": "OWL", "nb_classes": 14, "nb_individuals": 0, "nb_properties": 19, "max_depth": 2, "max_children": 10, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADHER_INTCARE_SP", "name": "Adherence and Integrated Care in Spanish", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2661, "download_url": "media/ontologies/ADHER_INTCARE_SP/6/adher_intcare_sp.owl", "submission_id": 6, "domain": null, "description": "This ontology includes concepts in Spanish related to adherence to therapeutic plans in the context of integrated care. Includes maps with Snomed CT, bibliographic references and definitions from the Dictionary of the Royal Academy of Medicine of Spain. Ontology developed with the support of the project StandICT.eu.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-04-26T00:00:00", "date_created": "2019-06-17T11:40:13", "home_page": null, "version": "Spanish 052319", "has_ontology_language": "OWL", "nb_classes": 265, "nb_individuals": 0, "nb_properties": 12, "max_depth": 7, "max_children": 23, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HPV", "name": "HPV Cancer Dictionary", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MIFD", "name": "Minimum Information for Fermentation Devices", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8004, "download_url": "media/ontologies/MIFD/5/mifd.owl", "submission_id": 5, "domain": null, "description": "MIFD is an ontology schema for modeling fermentation devices, their components and all the intricate hierarchical dependencies involved in such equipment configurations. The concept of device refers to the top layer of the cultivation equipment abstraction. Devices can host single fermentation vessels or have slots that can host multiple ones. The concept of vessel reflects individual fermentation units that can be of any type (e.g. bioreactor, microwell, flask etc). The component category describes sensors and actuators that are typically attached to fermentation vessels.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-26T00:00:00", "date_created": "2026-02-26T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 13, "nb_individuals": 0, "nb_properties": 11, "max_depth": 1, "max_children": 12, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IVAN", "name": "IVAN OTERO", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SHEDDING-HUB", "name": "Pathogen and Biomarker Shedding", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "MIFE", "name": "Minimum information for fermentation experiments", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8005, "download_url": "media/ontologies/MIFE/3/mife.owl", "submission_id": 3, "domain": null, "description": "Minimum Information for Fermentation Experiments (MIFE) was designed to thoroughly describe industrial biotechnology fermentation experiments. It extends Investigation Study Assay (ISA) metadata structure to also include the concepts of observation units and samples that correspond to fermentation runs and samples taken from a fermentation vessel. The hierarchical nature of the extended ISA structure behind MIFE is capable of supporting the management of entire projects by enabling the thorough recording of key information related to fermentation experiments.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-26T00:00:00", "date_created": "2026-02-26T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 7, "nb_individuals": 0, "nb_properties": 5, "max_depth": 1, "max_children": 6, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADMIN", "name": "Nurse Administrator", "status": "Classified", "topics": null, "species": null, "submission": { "id": 267, "download_url": "media/ontologies/ADMIN/1/admin.owl", "submission_id": 1, "domain": null, "description": "This is an ontology showing a nurse administrator's process domain", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-09-24T00:00:00", "date_created": "2015-09-24T02:12:30", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 44, "nb_individuals": 63, "nb_properties": 42, "max_depth": 4, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADO", "name": "Alzheimer's Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6071, "download_url": "media/ontologies/ADO/8/ado.owl", "submission_id": 8, "domain": "health", "description": "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelated entities that demonstrate the network of the understanding on Alzheimer's disease and can be readily applied for text mining.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ado.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ado.owl" } ], "taxon": null, "date_released": "2023-09-25T12:00:08.165445", "date_created": "2023-09-25T12:00:08.165468", "home_page": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO", "version": null, "has_ontology_language": "OWL", "nb_classes": 1963, "nb_individuals": 2, "nb_properties": 12, "max_depth": 18, "max_children": 507, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "606554c44146d2430fbe0d88da60cf73" } }, { "acronym": "KOIO", "name": "Knowledge Object Implementation Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AFO", "name": "Allotrope Merged Ontology Suite", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8096, "download_url": "media/ontologies/AFO/44/afo.owl", "submission_id": 44, "domain": null, "description": "<p><strong>Allotrope Merged Ontology Suite</strong></p>\r\n\r\n<p>The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.</p>\r\n\r\n<p>license: http://purl.allotrope.org/voc/creative-commons-attribution-license<br/>\r\nrights: http://purl.allotrope.org/voc/copyright<br/></p>", "documentation": "http://docs.allotrope.org", "publication": "['http://www.allotrope.org']", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-27T06:35:02", "date_created": "2026-03-31T00:00:00", "home_page": "http://purl.allotrope.org", "version": "REC/2026/03", "has_ontology_language": "OWL", "nb_classes": 3517, "nb_individuals": 66, "nb_properties": 297, "max_depth": 12, "max_children": 221, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AFPO", "name": "African Population Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6581, "download_url": "media/ontologies/AFPO/1/afpo.owl", "submission_id": 1, "domain": "organisms", "description": "AfPO is a tool which enables to annotate the African individuals, and brings together knowledge accumulated about existing populations with their genetic fingerprint in a standardized format.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "afpo.owl", "title": "AfPO (OWL edition)", "description": "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/afpo.owl" }, { "id": "afpo.obo", "page": "https://github.com/h3abionet/afpo", "title": "AfPO (OBO edition)", "description": "A direct translation of the AfPO (OWL edition) into OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/afpo.obo" }, { "id": "afpo.json", "page": "https://github.com/h3abionet/afpo", "title": "AfPO (obographs JSON edition)", "description": "A direct translation of the AfPO (OWL edition) into OBOGraph JSON format", "ontology_purl": "http://purl.obolibrary.org/obo/afpo.json" } ], "taxon": null, "date_released": "2024-05-06T12:00:04.667361", "date_created": "2024-05-06T12:00:04.667364", "home_page": "https://github.com/h3abionet/afpo", "version": null, "has_ontology_language": "OWL", "nb_classes": 473, "nb_individuals": 19, "nb_properties": 3, "max_depth": 6, "max_children": 61, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "5d056a827bd26e4f879c4ae8d195f871" } }, { "acronym": "AGRO", "name": "Agronomy Ontology", "status": "Classified", "topics": [], "species": [], "submission": { "id": 5460, "download_url": "media/ontologies/AGRO/7/agro.owl", "submission_id": 7, "domain": "agriculture", "description": "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments", "documentation": null, "publication": null, "publications": [ { "id": "http://ceur-ws.org/Vol-1747/IT205_ICBO2016.pdf", "title": "Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics." } ], "products": [ { "id": "agro.owl", "title": "AgrO", "description": "Contains all AgrO terms and links to other relavent ontologies.", "ontology_purl": "http://purl.obolibrary.org/obo/agro.owl" } ], "taxon": null, "date_released": "2022-11-07T12:00:06.376229", "date_created": "2022-11-07T12:00:06.376244", "home_page": "https://github.com/AgriculturalSemantics/agro", "version": null, "has_ontology_language": "OWL", "nb_classes": 4163, "nb_individuals": 552, "nb_properties": 203, "max_depth": 35, "max_children": 39, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7acfc7cd3e299d8a4b358d03b3d8f567" } }, { "acronym": "AIDENTIFYAGE", "name": "AIdentifyAGE", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7910, "download_url": "media/ontologies/AIDENTIFYAGE/10/aidentifyage.owl", "submission_id": 10, "domain": null, "description": "The AIdentifyAGE ontology provides a comprehensive vocabulary description for forensic age assessment using dental biological markers, promoting the transparent assessment processes in forensic odontology and age diagnostics. It formalizes expert knowledge according to IOFOS, AGFAD, ABFO, ADA and ISO standards, ensuring semantic interoperability and ethical AI integration. This ontology is a work in progress developed under the AIdentifyAGE project (FCT Grant 2024.07444.IACDC), within the national investment RE-C05-i08 – More Digital Science, measure RE-C05-i08.M04 – Support to R&D projects for advanced cybersecurity, artificial intelligence and data science systems in public administration. This work is being developed in collaboration with researchers from the University of Lisbon (Portugal), the University of Münster (Germany), and the University of Zagreb (Croatia), within the framework of the AIdentifyAGE international consortium., Base Ontology for use in AIdentifyAGE Project", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-01-24T02:00:08", "date_created": "2026-01-23T00:00:00", "home_page": null, "version": "v1.0.8-beta", "has_ontology_language": "OWL", "nb_classes": 1448, "nb_individuals": 556, "nb_properties": 97, "max_depth": 15, "max_children": 342, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AIO", "name": "Artificial Intelligence Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6983, "download_url": "media/ontologies/AIO/23/aio.owl", "submission_id": 23, "domain": null, "description": "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases.", "documentation": "https://github.com/berkeleybop/artificial-intelligence-ontology", "publication": "https://arxiv.org/abs/2404.03044", "publications": null, "products": null, "taxon": null, "date_released": "2024-11-12T02:00:07", "date_created": "2024-11-12T02:00:08", "home_page": "https://github.com/berkeleybop/artificial-intelligence-ontology", "version": "2024-11-11", "has_ontology_language": "OWL", "nb_classes": 443, "nb_individuals": 0, "nb_properties": 2, "max_depth": 5, "max_children": 47, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AIRBUS", "name": "Airbus", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5024, "download_url": "media/ontologies/AIRBUS/5/airbus.skos", "submission_id": 5, "domain": null, "description": "A simple vocabulary for Airbus Aircraft", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-04-06T00:00:00", "date_created": "2022-04-07T19:55:39", "home_page": null, "version": "1.0.4", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 13, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ATOM", "name": "Atlas Ontology Model", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5791, "download_url": "media/ontologies/ATOM/1/atom.owl", "submission_id": 1, "domain": null, "description": "An ontology model for anatomical atlases.", "documentation": "https://doi.org/10.1101/2023.01.22.525049", "publication": "https://doi.org/10.1101/2023.01.22.525049", "publications": null, "products": null, "taxon": null, "date_released": "2023-04-27T00:00:00", "date_created": "2023-04-29T07:11:19", "home_page": "https://github.com/SciCrunch/NIF-Ontology", "version": "2023-04-27", "has_ontology_language": "OWL", "nb_classes": 93, "nb_individuals": 4, "nb_properties": 18, "max_depth": 5, "max_children": 12, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BFO", "name": "Basic Formal Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2877, "download_url": "media/ontologies/BFO/5/bfo.owl", "submission_id": 5, "domain": "upper", "description": "The upper level ontology upon which OBO Foundry ontologies are built.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "bfo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/bfo.owl" }, { "id": "bfo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/bfo.obo" } ], "taxon": null, "date_released": "2019-09-02T12:00:03.790326", "date_created": "2019-09-02T12:00:03.790386", "home_page": "http://ifomis.org/bfo/", "version": null, "has_ontology_language": "OWL", "nb_classes": 36, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "738838092081290736ec3a1485cd07cb" } }, { "acronym": "GECCO", "name": "COVID-19 Common Datamodel", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BHN", "name": "Biologie Hors Nomenclature", "status": "Classified", "topics": null, "species": null, "submission": { "id": 155, "download_url": "media/ontologies/BHN/1/bhn.owl", "submission_id": 1, "domain": null, "description": "L'activité innovante de biologie et d'anatomo-pathologie réalisée notamment dans les Centres Hospitalo-Universitaires est habituellement appelée \"activité hors nomenclature\" (BHN pour la biologie hors nomenclature et PHN pour l'anatomo-pathologie hors nomenclature). Ce caractère \"hors nomenclature\" signifie que l'assurance maladie n'a pas encore intégré ces actes dans la Nomenclature des Actes de Biologie Médicale (NABM) ou la Nomenclature Générale des Actes Professionnels (NGAP).", "documentation": "http://www.chu-montpellier.fr/publication/inter_pub/R300/rubrique.jsp", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-02-11T00:00:00", "date_created": "2013-11-19T16:05:53", "home_page": "http://www.chu-montpellier.fr/publication/inter_pub/R300/rubrique.jsp", "version": "3.2", "has_ontology_language": "OWL", "nb_classes": 2534, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 148, "avg_children": 21, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIBFRAME", "name": "BIBFRAME 2.0", "status": "Classified", "topics": null, "species": null, "submission": { "id": 543, "download_url": "media/ontologies/BIBFRAME/3/bibframe.owl", "submission_id": 3, "domain": null, "description": "Initiated by the Library of Congress, BIBFRAME provides a foundation for the future of bibliographic description, both on the web, and in the broader networked world. In addition to being a replacement for MARC, BIBFRAME serves as a general model for expressing and connecting bibliographic data. A major focus of the initiative will be to determine a transition path for the MARC 21 formats while preserving a robust data exchange that has supported resource sharing and cataloging cost savings in recent decades.", "documentation": "https://www.loc.gov/bibframe/docs/index.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-06-09T01:00:14", "date_created": "2017-06-09T01:00:14", "home_page": "https://www.loc.gov/bibframe/", "version": "2017-05-04T14:49:12.796-04:00", "has_ontology_language": "OWL", "nb_classes": 188, "nb_individuals": 0, "nb_properties": 195, "max_depth": 2, "max_children": 75, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "bibliographic", "name": "Bibliographic", "status": "Classified", "topics": null, "species": null, "submission": { "id": 448, "download_url": "media/ontologies/bibliographic/1/bibliographic.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl\r\n\r\nThis file contains selected terms from the bibliographic ontology (see http://bibliontology.com/) which relate to information resources.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T01:25:04", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 63, "nb_individuals": 0, "nb_properties": 77, "max_depth": 4, "max_children": 19, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIFCELL", "name": "Neuroscience Information Framework (NIF) Cell Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 666, "download_url": "media/ontologies/NIFCELL/15/nifcell.owl", "submission_id": 15, "domain": null, "description": "Cell types from NIFSTD", "documentation": "http://neuinfo.org/about/vocabularies.shtml", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-11T01:10:12", "date_created": "2017-10-11T01:10:12", "home_page": "http://neuinfo.org/", "version": "v.1.10 - July 17, 2013", "has_ontology_language": "OWL", "nb_classes": 2770, "nb_individuals": 102, "nb_properties": 86, "max_depth": 14, "max_children": 948, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ADW", "name": "Animal Natural History and Life History Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 616, "download_url": "media/ontologies/ADW/2/adw.owl", "submission_id": 2, "domain": null, "description": "An ontology for animal life history and natural history characteristics suitable for populations and higher taxonomic entities.", "documentation": "http://animaldiversity.ummz.umich.edu/site/about/technology/index.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-08-31T07:00:00", "date_created": "2010-09-01T05:37:48", "home_page": "http://www.animaldiversity.org", "version": "10/11/04", "has_ontology_language": "OWL", "nb_classes": 364, "nb_individuals": 26, "nb_properties": 81, "max_depth": 4, "max_children": 21, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIBLIOTEK-O", "name": "The Biblioteko Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 471, "download_url": "media/ontologies/BIBLIOTEK-O/3/bibliotek-o.owl", "submission_id": 3, "domain": null, "description": "An ontology recommendation for modeling bibliographic metadata", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-12T01:02:14", "date_created": "2017-07-12T01:02:14", "home_page": "http://bibliotek-o.org/", "version": "Version 1.1.0", "has_ontology_language": "OWL", "nb_classes": 278, "nb_individuals": 30, "nb_properties": 24, "max_depth": 3, "max_children": 140, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BMS-LM", "name": "BioMedical Study Lifecycle Management", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5645, "download_url": "media/ontologies/BMS-LM/1/bms-lm.owl", "submission_id": 1, "domain": null, "description": "Biomedical research data reuse and sharing is essential for fostering research\r\nprogress. To this aim, data producers need to master data management and reporting\r\nthrough standard and rich metadata, as encouraged by open data initiatives such as\r\nthe FAIR (Findable, Accessible, Interoperable, Reusable) guidelines. This helps data re-users to understand and reuse the shared data with confidence. Therefore, dedicated frameworks are required. The provenance reporting throughout a biomedical study lifecycle has been proposed as a way to increase confidence in data while reusing it. The Biomedical Study - Lifecycle Management (BMS-LM) data model has implemented provenance and lifecycle traceability for several multimodal-imaging techniques but this is not enough for data understanding while reusing it. Actually, in the large scope of biomedical research, a multitude of metadata sources, also called Knowledge Organization Systems (KOSs), are available for data annotation. In addition, data producers uses local terminologies or KOSs, containing vernacular\r\nterms for data reporting. The result is a set of heterogeneous KOSs (local and published) with different formats and levels of granularity. To manage the inherent heterogeneity, semantic interoperability is encouraged by the Research Data\r\nManagement (RDM) community. Ontologies, and more specifically top ontologies such as BFO and DOLCE, make explicit the metadata semantics and enhance semantic interoperability. Based on the BMS-LM data model and the BFO top ontology, the BioMedical Study - Lifecycle Management (BMS-LM) core ontology is proposed together with an associated framework for semantic interoperability between heterogeneous KOSs. It is made of four ontological levels: top/core/domain/local and\r\naims to build bridges between local and published KOSs. In this paper, the conversion of the BMS-LM data model to a core ontology is detailed. The implementation of its semantic interoperability in a specific domain context is explained and illustrated with examples from small animal preclinical research.", "documentation": null, "publication": "https://doi.org/10.1016/j.jbi.2022.104007", "publications": null, "products": null, "taxon": null, "date_released": "2022-02-01T00:00:00", "date_created": "2023-02-01T11:42:37", "home_page": null, "version": "Version 1.1", "has_ontology_language": "OWL", "nb_classes": 154, "nb_individuals": 22, "nb_properties": 98, "max_depth": 9, "max_children": 12, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HIVHPVSTOM", "name": "HIVHPVStom", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BFLC", "name": "LC BIBFRAME 2.0 Vocabulary Extension", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5125, "download_url": "media/ontologies/BFLC/3/bflc.owl", "submission_id": 3, "domain": null, "description": "An experimental extension to BIBFRAME 2.0 primarily for use by the Library of Congress, but with additions also applicable for other users", "documentation": "http://id.loc.gov/ontologies/bflc.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-06-04T01:01:53", "date_created": "2022-06-04T01:01:57", "home_page": "http://id.loc.gov/ontologies/bflc.html", "version": "1.2.0", "has_ontology_language": "OWL", "nb_classes": 226, "nb_individuals": 270, "nb_properties": 162, "max_depth": 3, "max_children": 88, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CHIRO", "name": "CHEBI Integrated Role Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 3121, "download_url": "media/ontologies/CHIRO/1/chiro.owl", "submission_id": 1, "domain": "biochemistry", "description": "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "chiro.owl", "name": "CHEBI Integrated Role Ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/chiro.owl" }, { "id": "chiro.obo", "name": "CHEBI Integrated Role Ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/chiro.obo" } ], "taxon": null, "date_released": "2019-11-25T13:28:21.787628", "date_created": "2019-11-25T13:28:21.787646", "home_page": "https://github.com/obophenotype/chiro", "version": null, "has_ontology_language": "OWL", "nb_classes": 13286, "nb_individuals": 0, "nb_properties": 15, "max_depth": 12, "max_children": 461, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d640f798cf915ced4ddd12aa7a939d98" } }, { "acronym": "cd", "name": "ashuu", "status": "Unknown", "topics": [ "nlp" ], "species": [ "corpus" ], "submission": null }, { "acronym": "CVO", "name": "CardiovascularDiseaseOntology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ASDF", "name": "testiiii1", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7360, "download_url": "media/ontologies/ASDF/1/asdf.obo", "submission_id": 1, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-05-21T00:00:00", "date_created": "2025-05-21T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OBO", "nb_classes": 913, "nb_individuals": 0, "nb_properties": 2, "max_depth": 10, "max_children": 28, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "acro", "name": "test-ont", "status": "Unknown", "topics": [ "topic-1" ], "species": [ "not-sure" ], "submission": null }, { "acronym": "HMADO", "name": "Human Microbiome Associated Disease Ontology ", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "WHEAT", "name": "walgreens wheat ridge co", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BCLION", "name": "Breast Cancer Lifestyle Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6294, "download_url": "media/ontologies/BCLION/1/bclion.owl", "submission_id": 1, "domain": null, "description": "The Breast Cancer Lifestyle Ontology (BCLION) captures various factors related to lifestyle choices and behaviors that may influence the risk of developing breast cancer. It provides a structured representation of these factors in a hierarchical manner, allowing for a comprehensive understanding of the different aspects of breast cancer lifestyle.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-01-02T00:00:00", "date_created": "2024-01-02T11:25:00", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 30, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BCON", "name": "Breast Cancer Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6295, "download_url": "media/ontologies/BCON/2/bcon.owl", "submission_id": 2, "domain": null, "description": "The Breast Cancer Ontology (BCON) aims to capture the diverse aspects of breast cancer, including its molecular biology, pathology, epidemiology, clinical data, and lifestyle factors. By representing this knowledge in a standardized and machine-readable format, the ontology enables researchers, clinicians, and other stakeholders to access, share, and analyze breast cancer-related information more effectively. It serves as a valuable resource for organizing existing knowledge, discovering new insights, and supporting decision-making processes in the field of breast cancer research and healthcare.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-01-02T00:00:00", "date_created": "2024-01-02T11:07:27", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 66, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 11, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BCSR-ONTO", "name": "Breast cancer screening recommendation ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6798, "download_url": "media/ontologies/BCSR-ONTO/3/bcsr-onto.owl", "submission_id": 3, "domain": null, "description": "BCSR-Onto represents knowledge about risk assessment and recommendations by diverse guidelines for breast cancer screening both for women at high and average risk of developing breast cancer.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-08-09T00:00:00", "date_created": "2024-08-05T04:28:49", "home_page": null, "version": "2.1", "has_ontology_language": "OWL", "nb_classes": 34, "nb_individuals": 115, "nb_properties": 34, "max_depth": 3, "max_children": 17, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TMD", "name": "Tam Minh Duogn Pharmacy", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BIM", "name": "Biomedical Image Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 559, "download_url": "media/ontologies/BIM/6/bim.owl", "submission_id": 6, "domain": null, "description": "Biomedical images published within the scientific literature play a central role in reporting and facilitating life science discoveries. Existing ontologies and vocabularies describing biomedical images, particularly sequence images, do not provide sufficient semantic representation for image annotations generated automatically and/or semi-automatically. We present an open ontology for the annotation of biomedical images (BIM) scripted in OWL/RDF. The BIM ontology provides semantic vocabularies to describe the manually curated image annotations as well as annotations generated by online bioinformatics services using content extracted from images by the Semantic Enrichment of Biomedical Images (SEBI) system. The BIM ontology is represented in three parts; (i) image vocabularies - which holds vocabularies for the annotation of an image and/or region of interests (ROI) inside an image, as well as vocabularies to represent the pre and post processing states of an image, (ii) text entities - covers annotations from the text that are associated with an image (e.g. image captions) and provides semantic representation for NLP algorithm outputs, (iii) a provenance model - that contributes towards the maintenance of annotation versioning. To illustrate the BIM ontology’s utility, we provide three annotation cases generated by BIM in conjunction with the SEBI image annotation engine.", "documentation": "http://cbakerlab.unbsj.ca/unbvps/BIM", "publication": "https://code.google.com/p/bio-ont/", "publications": null, "products": null, "taxon": null, "date_released": "2014-09-26T00:00:00", "date_created": "2015-10-08T22:02:57", "home_page": "https://sites.google.com/site/bimontology/", "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 125, "nb_individuals": 34, "nb_properties": 73, "max_depth": 3, "max_children": 50, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIRTHDAYH", "name": "NeuroMorpho.Org cell types birthdate", "status": "Classified", "topics": null, "species": null, "submission": { "id": 652, "download_url": "media/ontologies/BIRTHDAYH/4/birthdayh.owl", "submission_id": 4, "domain": null, "description": "A hierarchy of neuron types based on its birthdate. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-03-31T01:00:16", "date_created": "2017-03-31T01:00:16", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 15, "nb_individuals": 13, "nb_properties": 0, "max_depth": 1, "max_children": 13, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BLM", "name": "BioLink Model", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4794, "download_url": "media/ontologies/BLM/79/blm.owl", "submission_id": 79, "domain": null, "description": "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations", "documentation": "https://github.com/biolink/biolink-model", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-12-23T02:00:45", "date_created": "2021-12-23T02:00:47", "home_page": "https://biolink.github.io/biolink-model/", "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 292, "nb_individuals": 0, "nb_properties": 443, "max_depth": 7, "max_children": 46, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "QUDT2-1", "name": "Quantities, Units, Dimensions and Types (QUDT Version 2.1)", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CHRO", "name": "Chromatin Regulator Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6312, "download_url": "media/ontologies/CHRO/2/chro.owl", "submission_id": 2, "domain": null, "description": "Functional and biochemical description of covalent histone modifiers and chromatin remodeler proteins.", "documentation": "https://github.com/smollahlab/crewATLAS/tree/master/CRO", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-01-05T00:00:00", "date_created": "2024-01-05T19:13:38", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 1204, "nb_individuals": 22, "nb_properties": 153, "max_depth": 11, "max_children": 110, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "URLO", "name": "Uniform Resource Locator Ontology", "status": "Unknown", "topics": [], "species": [], "submission": null }, { "acronym": "ISO19110", "name": "ISO 19110 Methodology for Feature Cataloguing", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 69, "download_url": "media/ontologies/ISO19110/1/iso19110.owl", "submission_id": 1, "domain": null, "description": "ISO 19110:2005 Methodology for feature cataloguing", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-22T00:00:00", "date_created": "2017-07-22T14:32:20", "home_page": null, "version": "2005-02-15", "has_ontology_language": "OWL", "nb_classes": 36, "nb_individuals": 5, "nb_properties": 57, "max_depth": 2, "max_children": 22, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "CMECS", "name": "Coastal and Marine Ecological Classification Standard Catalog", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6608, "download_url": "media/ontologies/CMECS/2/cmecs.owl", "submission_id": 2, "domain": null, "description": "The Coastal and Marine Ecological Classification Standard (CMECS, FGDC-STD-018-2012) is collection of defined terms (\"units\") used to describe and classify marine ecological data. It is a national scheme for classifying and integrating observational data collected in coastal, marine, and lacustrine environments in U.S. waters. CMECS was published by the U.S. Federal Geographic Data Committee (FGDC) in 2012. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-05-13T00:00:00", "date_created": "2024-05-14T16:48:14", "home_page": "https://github.com/NCEI-NOAAGov/cmecs", "version": "1.1.0", "has_ontology_language": "OWL", "nb_classes": 1689, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 70, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTODRC", "name": "ONTODRC", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "COCHRANE", "name": "Cochrane Core Vocabulary Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7915, "download_url": "media/ontologies/COCHRANE/1/cochrane.owl", "submission_id": 1, "domain": null, "description": "The Cochrane Core ontology describes the entities and concepts that exist in the domain of evidence based healthcare. It is used for the construction of the Cochrane Linked Data Vocabulary containing some 400k terms including Interventions (Drugs, Procedures etc), Populations (Age, Sex, Condition), and clinical Outcomes., The Cochrane Core ontology describes the entities and concepts that exist in the domain of evidence based healthcare.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2014-02-06T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": "https://data.cochrane.org/ontologies/core/index-en.html", "version": "2.0.1", "has_ontology_language": "OWL", "nb_classes": 26, "nb_individuals": 0, "nb_properties": 8, "max_depth": 5, "max_children": 14, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NONRCTO", "name": "Non-Randomized Controlled Trials Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 292, "download_url": "media/ontologies/NONRCTO/1/nonrcto.owl", "submission_id": 1, "domain": null, "description": "We built an ontology to help the systematic review and meta-analysis process of non randomized clinical trials.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-01-18T08:00:00", "date_created": "2012-02-24T23:41:16", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 156, "nb_individuals": 31, "nb_properties": 9, "max_depth": 5, "max_children": 8, "avg_children": 3, "classifiable": true, "nb_inconsistent": 5, "indexed": true, "md5sum": null } }, { "acronym": "COHSI2TERMSWEEKX", "name": "cohsi2termsweekx", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5348, "download_url": "media/ontologies/COHSI2TERMSWEEKX/1/cohsi2termsweekx.skos", "submission_id": 1, "domain": null, "description": "Vocabularies are created to descibe week X report for CoHSI2 study", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-11T00:00:00", "date_created": "2022-09-11T20:59:45", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 32, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADAR", "name": "Autism DSM-ADI-R ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 453, "download_url": "media/ontologies/ADAR/1/adar.owl", "submission_id": 1, "domain": null, "description": "The autism DSM-ADI-R (ADAR) ontology extends an ontology by Tu et al. with additional SWRL rules to infer phenotypes from ADI-R items.\r\nIt includes OWL class definitions representing DSM IV diagnostic criteria for autistic disorder and ASD criteria for Autism Spectrum Disorder\r\nOWL Reasoners can thus infer autism-related phenotypes from ADI-R questionnaire results \r\n\r\nTu SW, Tennakoon L, Connor MO, Das A. Using an Integrated Ontology and Information Model for Querying and Reasoning about Phenotypes : The Case of Autism. AMIA Annu Symp Proc 2008;727–31\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-03-27T00:00:00", "date_created": "2015-04-07T23:36:38", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 791, "nb_individuals": 646, "nb_properties": 1448, "max_depth": 13, "max_children": 14, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AD-CDO", "name": "Alzheimer's Disease Common Data Element Ontology for Clinical Trials", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7778, "download_url": "media/ontologies/AD-CDO/1/ad-cdo.owl", "submission_id": 1, "domain": null, "description": "The Alzheimer’s Disease Common Data Element Ontology for Clinical Trials (AD-CDO) is a semantically enriched, lightweight ontology designed to represent and standardize key eligibility criteria concepts in Alzheimer’s disease (AD) clinical trials. It bridges the gap between broad biomedical ontologies and the task-specific needs of trial modeling. AD-CDO was constructed by extracting high-frequency concepts from over 1,500 AD interventional trials registered on ClinicalTrials.gov. To balance coverage with manageability, the ontology utilizes the Jenks Natural Breaks method to identify the most representative concepts. The key feature of AD-CDO is its extensive mapping to standardized biomedical vocabularies to support data integration and phenotyping.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-26T00:00:00", "date_created": "2025-11-26T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 293, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 28, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AGROCYMAC", "name": "Control y Monitoreo de afecciones en los cultivos", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2441, "download_url": "media/ontologies/AGROCYMAC/2/agrocymac.owl", "submission_id": 2, "domain": null, "description": "Agrocymac es una ontología creada para estructurar información sobre el control y monitoreo de plagas, malezas y enfermedades que afectan específicamente a los cultivos de Arroz, Café y Cacao.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-02-17T00:00:00", "date_created": "2019-04-03T21:04:23", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 13, "nb_individuals": 148, "nb_properties": 9, "max_depth": 2, "max_children": 5, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AIPBC", "name": "Aromatase_Inhibitor_Pathway_Breast_Cell_Pharmacodynamics", "status": "Classified", "topics": [], "species": [], "submission": { "id": 2974, "download_url": "media/ontologies/AIPBC/1/aipbc.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-10-01T07:27:18.316047", "date_created": "2019-10-01T07:27:18.316017", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 69, "nb_individuals": 72, "nb_properties": 55, "max_depth": 5, "max_children": 15, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AI-RHEUM", "name": "Artificial Intelligence Rheumatology Consultant System Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 279, "download_url": "media/ontologies/AI-RHEUM/9/ai-rheum.umls", "submission_id": 9, "domain": null, "description": "AI/RHEUM is used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations, tissue biopsy results, and intermediate diagnosis hypotheses. Findings and hypotheses, which include definitions, are used to reach diagnostic conclusions with definite, probable, or possible certainty. AI/RHEUM is used by clinicians and informatics researchers.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:57", "date_created": "2017-02-06T21:25:57", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 808, "nb_individuals": 0, "nb_properties": 1, "max_depth": 4, "max_children": 81, "avg_children": null, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AMINO-ACID", "name": "Amino Acid Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 258, "download_url": "media/ontologies/AMINO-ACID/2/amino-acid.owl", "submission_id": 2, "domain": null, "description": "An ontology of amino acids and their properties. Inferred version.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2007-01-10T08:00:00", "date_created": "2010-07-02T17:57:00", "home_page": "http://www.co-ode.org/ontologies/amino-acid/2009/02/16/", "version": "classified", "has_ontology_language": "OWL", "nb_classes": 46, "nb_individuals": 0, "nb_properties": 6, "max_depth": 3, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TEST1234", "name": "test123", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "EGFR", "name": "Hypermethylation", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AGENSAKONGONLINE", "name": "Keris99-Agen-Sakong-Online-Capsa-Susun-Bandar-Poker-Judi-Domino99-BandarQ-AduQ", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "KERIS99SAKONG", "name": "keris99-agen-sakong-online-capsa-susun-bandarpoker-judi-domino99-bandarq-aduq", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "NEWS", "name": "NEWS ARTICLES", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAMOBILJOGJA09", "name": "Sewa Mobil Jogja Terbaik", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWABUSJOGJA06", "name": "Sewa Bus Jogja Terbaik", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "WISATA_JOGJA78", "name": "Paket Wisata Jogja", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "WISATA_JOGJA23", "name": "Paket Wisata Jogja Murah", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWABUSJOGJA68", "name": "Sewa Bus Jogja", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAMOBILJOGJA44", "name": "Sewa Mobil Jogja", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BMPO", "name": "Bombyx Mori Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6712, "download_url": "media/ontologies/BMPO/9/bmpo.owl", "submission_id": 9, "domain": null, "description": "The Bombyx Mori Phenotype Ontology (BMPO) defines all phenotypes of Bombyx Mori.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-07-01T00:00:00", "date_created": "2024-07-01T00:17:18", "home_page": null, "version": "3.3", "has_ontology_language": "OWL", "nb_classes": 571, "nb_individuals": 0, "nb_properties": 4, "max_depth": 6, "max_children": 126, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADALAB", "name": "AdaLab ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 248, "download_url": "media/ontologies/ADALAB/10/adalab.owl", "submission_id": 10, "domain": null, "description": "AdaLab ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-06-29T01:00:05", "date_created": "2017-06-29T01:00:05", "home_page": null, "version": "0.9.2", "has_ontology_language": "OWL", "nb_classes": 460, "nb_individuals": 3, "nb_properties": 76, "max_depth": 15, "max_children": 39, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADALAB-META", "name": "AdaLab-meta ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 319, "download_url": "media/ontologies/ADALAB-META/12/adalab-meta.owl", "submission_id": 12, "domain": null, "description": "AdaLab meta ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-09-15T01:00:07", "date_created": "2017-09-15T01:00:07", "home_page": null, "version": "0.9.2", "has_ontology_language": "OWL", "nb_classes": 78, "nb_individuals": 15, "nb_properties": 137, "max_depth": 4, "max_children": 22, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADHER_INTCARE_EN", "name": "Adherence and Integrated Care", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2546, "download_url": "media/ontologies/ADHER_INTCARE_EN/1/adher_intcare_en.owl", "submission_id": 1, "domain": null, "description": "This ontology includes concepts in English related to adherence to therapeutic plans in the context of integrated care. Includes maps with Snomed CT, bibliographic references and definitions from the Dictionary of the Royal Academy of Medicine of Spain. Ontology developed with the support of the project StandICT.eu. The equivalent ontology in Spanish is ADHER_INTCARE_SP.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-05-13T00:00:00", "date_created": "2019-05-13T17:01:03", "home_page": null, "version": "English 051319", "has_ontology_language": "OWL", "nb_classes": 264, "nb_individuals": 0, "nb_properties": 13, "max_depth": 7, "max_children": 23, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SEPON", "name": "Sepsis Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ALTPROTON", "name": "An Ontology for integration and interoperability of multi-aspect data of Protein food production chains", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7745, "download_url": "media/ontologies/ALTPROTON/4/altproton.owl", "submission_id": 4, "domain": null, "description": "The ALTPROTON ontology is the foundation of a cloud-based interoperable data platform specifically tailored to address the complexities of the protein food production chain. The ALTPROTON consists of three main domains food quality, sustainability, and food processing. The multi-aspect data generated within each domain are connected via the most representative concepts to effectively integrate and interoperable for future advancement in the food industry and protein food research sector. The paper describes the concepts, classes, and relationships used in ALTPROTON to fill the gaps in existing food ontologies and databases.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-18T00:00:00", "date_created": "2025-11-18T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 278, "nb_individuals": 81, "nb_properties": 33, "max_depth": 9, "max_children": 21, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AMPHX", "name": "The Amphioxus Development and Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4124, "download_url": "media/ontologies/AMPHX/4/amphx.owl", "submission_id": 4, "domain": "anatomy", "description": "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "amphx.owl", "ontology_purl": "http://purl.obolibrary.org/obo/amphx.owl" }, { "id": "amphx.obo", "ontology_purl": "http://purl.obolibrary.org/obo/amphx.obo" } ], "taxon": null, "date_released": "2020-12-21T12:25:30.359360", "date_created": "2020-12-21T12:25:30.359380", "home_page": "https://github.com/EBISPOT/amphx_ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 403, "nb_individuals": 0, "nb_properties": 5, "max_depth": 3, "max_children": 272, "avg_children": 36, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "8da7464b67301beee8a20ed4a4215a37" } }, { "acronym": "SEWABUSJOGJA47", "name": "Sewa Bus Jogja 3", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAHIACEJOGJA32", "name": "Sewa Hiace Jogja Murah", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWABUSJOGJA24", "name": "Sewa Bus Jogja 6", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ANCESTRO", "name": "Ancestry Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 190, "download_url": "media/ontologies/ANCESTRO/2/ancestro.owl", "submission_id": 2, "domain": null, "description": "The Ancestry Ontology (Ancestro) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-15T00:00:00", "date_created": "2015-04-24T13:48:22", "home_page": "https://github.com/daniwelter/ancestro", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 541, "nb_individuals": 0, "nb_properties": 11, "max_depth": 4, "max_children": 240, "avg_children": 20, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COGITO", "name": "Cognitive Task Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7815, "download_url": "media/ontologies/COGITO/3/cogito.owl", "submission_id": 3, "domain": null, "description": "CogiTO forms a semantic bridge between tasks from Cognitive Atlas and Hierarchical Event Descriptor (HED) in the form of equivalent class axioms. In other words, terms for cognitive tasks are defined by their relation to HED tags.\r\nThe purpose of this ontology is to enable querying partially annotated datasets either by a Cognitive Task or by HED tags. ", "documentation": "https://gitlab.com/austrian-neurocloud/ontologies/cogito", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-10T00:00:00", "date_created": "2025-12-10T00:00:00", "home_page": null, "version": "1.1.0", "has_ontology_language": "OWL", "nb_classes": 4680, "nb_individuals": 10, "nb_properties": 7, "max_depth": 10, "max_children": 1467, "avg_children": 14, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "APAONTO", "name": "Psychology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 68, "download_url": "media/ontologies/APAONTO/4/apaonto.owl", "submission_id": 4, "domain": null, "description": "APA thesaurus . Flat ontology file", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-02-26T00:00:00", "date_created": "2014-11-03T07:39:37", "home_page": null, "version": "4", "has_ontology_language": "OWL", "nb_classes": 6037, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 6037, "avg_children": 6037, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AIDSCLIN", "name": "AIDSClinicOntology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 678, "download_url": "media/ontologies/AIDSCLIN/4/aidsclin.owl", "submission_id": 4, "domain": null, "description": "This new ontology will cover the knowledge on AIDS and the relevant clinic activities, which imports the HIV ontology at the site https://bioportal.bioontology.org/ontologies/HIVO004 as its main or basic concept system. \r\nThe new ontology is named AIDSClinic001.owl\r\n", "documentation": "http://blog.51.ca/u-345129/", "publication": "http://bhf.miforum.net/english/index_english.htm", "publications": null, "products": null, "taxon": null, "date_released": "2016-06-23T00:00:00", "date_created": "2016-09-02T19:17:24", "home_page": "http://bhf.miforum.net/english/index_english.htm", "version": "001", "has_ontology_language": "OWL", "nb_classes": 98, "nb_individuals": 0, "nb_properties": 2, "max_depth": 1, "max_children": 94, "avg_children": 48, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "APO", "name": "Ascomycete phenotype ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8022, "download_url": "media/ontologies/APO/67/apo.owl", "submission_id": 67, "domain": "phenotype", "description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/20157474", "title": "New mutant phenotype data curation system in the Saccharomyces Genome Database" } ], "products": [ { "id": "apo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/apo.owl" }, { "id": "apo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/apo.obo" } ], "taxon": { "id": "NCBITaxon:4890", "label": "Ascomycota" }, "date_released": "2026-03-16T12:00:28.898121", "date_created": "2026-03-16T12:00:28.898126", "home_page": "http://www.yeastgenome.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 619, "nb_individuals": 0, "nb_properties": 0, "max_depth": 8, "max_children": 314, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "cd11a915a2244bcdd2370dac02069487" } }, { "acronym": "ASPECT", "name": "ASPECT: wind energy vAriableS, ParametErs and ConsTants", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4583, "download_url": "media/ontologies/ASPECT/3/aspect.skos", "submission_id": 3, "domain": null, "description": "This is a taxonomy (i.e. controlled vocabulary) of variables, parameters, and constants used in the wind energy community.", "documentation": "https://github.com/DTUWindEnergy/ASPECT-taxonomy", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-10-15T01:00:19", "date_created": "2021-10-15T01:00:21", "home_page": "http://purl.org/aspect", "version": "0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 143, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AUDITORYH", "name": "NeuroMorpho.Org auditory functional regions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 418, "download_url": "media/ontologies/AUDITORYH/1/auditoryh.owl", "submission_id": 1, "domain": null, "description": "A hierarchy of functional regions related to auditory system.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-05T00:00:00", "date_created": "2016-06-05T18:48:16", "home_page": null, "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ENTITYCANDIDATES", "name": "ISO-15926-2_2003_entityMembershipCandidates", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 318, "download_url": "media/ontologies/ENTITYCANDIDATES/1/entitycandidates.owl", "submission_id": 1, "domain": null, "description": "ISO entity candidates for oil and gas", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T20:04:01", "home_page": null, "version": "Created 2008-07-14. Version 1.0.", "has_ontology_language": "OWL", "nb_classes": 45, "nb_individuals": 0, "nb_properties": 4, "max_depth": 0, "max_children": 45, "avg_children": 45, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "ABS", "name": "Biosurveillance Diseases", "status": "Unknown", "topics": [ "Anthology of Biosurveillance Diseases" ], "species": [ "Biosurveillance" ], "submission": null }, { "acronym": "mph(A)", "name": "ISRA GHORI", "status": "Unknown", "topics": [ "Antimicrobial resistance genes" ], "species": [ "klebsiella oneumoniae" ], "submission": null }, { "acronym": "BCGO", "name": "Beta Cell Genomics Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 968, "download_url": "media/ontologies/BCGO/3/bcgo.owl", "submission_id": 3, "domain": null, "description": "An application ontology built for beta cell genomics studies.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "bcgo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/bcgo.owl" } ], "taxon": null, "date_released": "2017-12-12T21:15:44.000702", "date_created": "2017-12-12T21:15:44.000724", "home_page": "https://github.com/obi-bcgo/bcgo", "version": null, "has_ontology_language": "OWL", "nb_classes": 2270, "nb_individuals": 46, "nb_properties": 101, "max_depth": 15, "max_children": 129, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "98f009c856256cc020120c8bf07b3ff8" } }, { "acronym": "BTO-EMMO", "name": "Brinell Test Ontology-EMMO", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 6778, "download_url": "media/ontologies/BTO-EMMO/3/bto-emmo.owl", "submission_id": 3, "domain": null, "description": "Brinell Test Ontology (BTO) has developed for representing the Brinell testing process, testing equipment requirements, test pieces charactristics, and related testing parameters and their measurement procedure according to DIN EN ISO 6506-1 standard. Versions info: V2 developed using BFO+CCO top-level ontologies. V3 developed using EMMO+CHAMEO top-level ontologies. V4 developed using PROVO+PMDco top-level ontologies. V5 developed using BFO+IOF top-level ontologies.", "documentation": "https://gitlab.com/kupferdigital/process-graphs/brinell-hardness-test/", "publication": "https://gitlab.com/kupferdigital/process-graphs/brinell-hardness-test/", "publications": null, "products": null, "taxon": null, "date_released": "2024-07-29T00:00:00", "date_created": "2024-07-30T08:07:22", "home_page": "https://gitlab.com/kupferdigital/process-graphs/brinell-hardness-test/", "version": "3.0.4 (EMMO, CHAMEO, MT)", "has_ontology_language": "OWL", "nb_classes": 2227, "nb_individuals": 67, "nb_properties": 151, "max_depth": 14, "max_children": 304, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BCTEO", "name": "Bone and Cartilage Tissue Engineering Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 298, "download_url": "media/ontologies/BCTEO/4/bcteo.obo", "submission_id": 4, "domain": null, "description": "Ontology that describes the field of Tissue Engineering for what concerns bone and cartilage tissues.", "documentation": null, "publication": "Federica Viti, Silvia Scaglione, Alessandro Orro, Luciano Milanesi \"Guidelines for managing data and processes in bone and cartilage tissue engineering\", BMC Bioinformatics, in press.", "publications": null, "products": null, "taxon": null, "date_released": "2013-09-02T07:00:00", "date_created": "2014-06-18T08:16:24", "home_page": null, "version": "releases/2013-08", "has_ontology_language": "OBO", "nb_classes": 253, "nb_individuals": 0, "nb_properties": 4, "max_depth": 3, "max_children": 67, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BCTT", "name": "Behaviour Change Technique Taxonomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 201, "download_url": "media/ontologies/BCTT/6/bctt.owl", "submission_id": 6, "domain": null, "description": "BCT Taxonomy v0.4", "documentation": "http://www.ucl.ac.uk/behaviour-change-techniques/Resources", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-11-22T00:00:00", "date_created": "2015-11-25T16:26:53", "home_page": "http://www.ucl.ac.uk/behaviour-change-techniques", "version": "0.4", "has_ontology_language": "OWL", "nb_classes": 110, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 16, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BHO", "name": "Bleeding History Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 263, "download_url": "media/ontologies/BHO/3/bho.owl", "submission_id": 3, "domain": null, "description": "An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.", "documentation": "https://bh.rockefeller.edu/RUBHPSR/Documentation.html", "publication": "http://www.rockefeller.edu/ccts/bioinformatics.php", "publications": null, "products": null, "taxon": null, "date_released": "2010-12-22T08:00:00", "date_created": "2010-12-22T19:02:22", "home_page": "http://www.rockefeller.edu/ccts/bioinformatics.php", "version": "0.4", "has_ontology_language": "OWL", "nb_classes": 544, "nb_individuals": 0, "nb_properties": 38, "max_depth": 7, "max_children": 19, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIFO", "name": "Biofilm Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4016, "download_url": "media/ontologies/BIFO/1/bifo.owl", "submission_id": 1, "domain": null, "description": "BIFO is intended to provide a biofilm ontology capable of understanding fundamental terminologies the relations between common biofilm terminologies following the guidelines of the Basic Formal Ontology (BFO).", "documentation": "https://github.com/biofilmDB/ontology ", "publication": "https://github.com/biofilmDB/ontology ", "publications": null, "products": null, "taxon": null, "date_released": "2020-10-24T00:00:00", "date_created": "2020-10-24T22:45:43", "home_page": "https://github.com/biofilmDB/ontology ", "version": null, "has_ontology_language": "OWL", "nb_classes": 78, "nb_individuals": 0, "nb_properties": 15, "max_depth": 6, "max_children": 11, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BMONT", "name": "Biomarker Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7504, "download_url": "media/ontologies/BMONT/3/bmont.owl", "submission_id": 3, "domain": "health", "description": "An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "BMONT.owl", "description": "Includes axioms linking to other ontologies, but no imports of those ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/BMONT.owl" } ], "taxon": null, "date_released": "2025-08-04T12:00:48.416725", "date_created": "2025-08-04T12:00:48.416728", "home_page": "https://github.com/SCAI-BIO/BiomarkerOntology", "version": null, "has_ontology_language": "OWL", "nb_classes": 641, "nb_individuals": 0, "nb_properties": 9, "max_depth": 10, "max_children": 69, "avg_children": 53, "classifiable": true, "nb_inconsistent": 69, "indexed": true, "md5sum": "cbd9dfbe6b6b0cda49f4a21c1488f4c3" } }, { "acronym": "HYDROMAX", "name": "hydroxtreme7", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAELFJOGJA20", "name": "Sewa Elf Jogja", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAHIACEJOGJA24", "name": "Sewa Hiace Jogja Terbaik", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAHIACEJOGJA12", "name": "Sewa Hiace Jogja", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "RENTALBUSJOGJA51", "name": "Rental Bus Jogja 2", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWABUSJOGJA89", "name": "Sewa Bus Jogja Murah", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAHIACEJOGJA41", "name": "Sewa Hiace Jogja 5", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAELFJOGJA91", "name": "Sewa Elf Jogja 2", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "STY1", "name": "STY1", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AGROVOC", "name": "AGROVOC", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "RENTALBUSJOGJA20", "name": "Rental Bus Jogja", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "GENEVIEVE", "name": "Charlotte", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWAHIACEJOGJA53", "name": "Sewa Hiace Jogja 3", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "SEWABUSJOGJA76", "name": "Sewa Bus Jogja 2", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CC", "name": "CC", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4375, "download_url": "media/ontologies/CC/1/cc.skos", "submission_id": 1, "domain": null, "description": "Client category", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-03-27T00:00:00", "date_created": "2021-03-27T17:20:45", "home_page": null, "version": "1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 4, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CCFO", "name": "Cardiac-centered Frailty Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2077, "download_url": "media/ontologies/CCFO/2/ccfo.owl", "submission_id": 2, "domain": null, "description": "This ontology is designed to cover the portions of reality relevant to assessing patient frailty. While we believe it to be relevant to frailty in general, during its development we were specifically focused on decisions relating to cardiac care. We gathered terms using existent instruments, physician interviews, and automated chart reviews. The hierarchical structure was taken from SNOMED-CT. We could not simply use SNOMED-CT because it is too exhaustive to be useful. We add entities where necessary to remain true to our data.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-11-19T00:00:00", "date_created": "2018-12-07T19:32:07", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 156, "nb_individuals": 0, "nb_properties": 4, "max_depth": 8, "max_children": 8, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CCLAYERH", "name": "NeuroMorpho.Org Cortical layers", "status": "Classified", "topics": null, "species": null, "submission": { "id": 156, "download_url": "media/ontologies/CCLAYERH/4/cclayerh.owl", "submission_id": 4, "domain": null, "description": "A hierarchy of Neocortex layers dimension.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:26:40", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 16, "nb_individuals": 25, "nb_properties": 0, "max_depth": 4, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CCON", "name": "Cerrado concepts and plant community dynamics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 172, "download_url": "media/ontologies/CCON/8/ccon.owl", "submission_id": 8, "domain": null, "description": "The ontology of Cerrado wood plant dynamics was created in order to represent the set of concepts about the dynamics, that is, changes over time of the wood vegetation structure, of Cerrado. Ccon describes the main parameters used to measure the changes, such as mortality rate and recruitment rate.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-01-29T08:32:33", "date_created": "2014-01-29T08:32:34", "home_page": null, "version": "0.9.3", "has_ontology_language": "OWL", "nb_classes": 86, "nb_individuals": 137, "nb_properties": 28, "max_depth": 6, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BKO", "name": "Bricks ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3798, "download_url": "media/ontologies/BKO/1/bko.owl", "submission_id": 1, "domain": null, "description": "The BricKs Ontology (BKO) provides Systems Biology Graphical Notation representations of recurring concepts in molecular networks. These representations, called bricks, are associated in the ontology with terms describing the concepts. Part of these terms are borrowed from the Gene Ontology and the Systems Biology Ontology. The bricks can be used for both the template-based construction of molecular networks maps as well as for their annotation.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-07-21T00:00:00", "date_created": "2020-07-21T12:56:52", "home_page": "http://sbgnbricks.org", "version": "13:07:2018 10:45", "has_ontology_language": "OWL", "nb_classes": 669, "nb_individuals": 35, "nb_properties": 3, "max_depth": 9, "max_children": 35, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBO", "name": "Ontology for Biomedical Investigation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7923, "download_url": "media/ontologies/OBO/2/obo.owl", "submission_id": 2, "domain": null, "description": "The Ontology for Biomedical Investigations (OBI) is build in a collaborative, international effort and will serve as a resource for annotating biomedical investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. This ontology arose from the Functional Genomics Investigation Ontology (FuGO) and will contain both terms that are common to all biomedical investigations, including functional genomics investigations and those that are more domain specific.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2009-07-31T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "2019-08-06", "has_ontology_language": "OWL", "nb_classes": 3462, "nb_individuals": 300, "nb_properties": 94, "max_depth": 17, "max_children": 78, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OC_E_V1", "name": "OntoCaimer_Examples V1", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7619, "download_url": "media/ontologies/OC_E_V1/1/oc_e_v1.owl", "submission_id": 1, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-25T00:00:00", "date_created": "2025-09-25T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 45, "nb_individuals": 165, "nb_properties": 32, "max_depth": 2, "max_children": 28, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CEI_10", "name": "Codificacion De Enfermedades Pediatricas (En Edición)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1355, "download_url": "media/ontologies/CEI_10/16/cei_10.owl", "submission_id": 16, "domain": null, "description": "En edicion por el Hospital de pediatria Garrahan", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-03-06T00:00:00", "date_created": "2018-03-22T23:15:27", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CDAO", "name": "Comparative Data Analysis Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6353, "download_url": "media/ontologies/CDAO/11/cdao.owl", "submission_id": 11, "domain": "organisms", "description": "a formalization of concepts and relations relevant to evolutionary comparative analysis", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.4137/EBO.S2320", "title": "Initial Implementation of a Comparative Data Analysis Ontology" } ], "products": [ { "id": "cdao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cdao.owl" } ], "taxon": null, "date_released": "2024-01-29T12:00:34.211463", "date_created": "2024-01-29T12:00:34.211467", "home_page": "https://github.com/evoinfo/cdao", "version": null, "has_ontology_language": "OWL", "nb_classes": 165, "nb_individuals": 26, "nb_properties": 69, "max_depth": 9, "max_children": 22, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "cf39b396dadfec88a973fac986445fa3" } }, { "acronym": "CDNO", "name": "Compositional Dietary Nutrition Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7954, "download_url": "media/ontologies/CDNO/20/cdno.owl", "submission_id": 20, "domain": "diet, metabolomics, and nutrition", "description": "CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.3389/fnut.2022.928837", "title": "Establishing a Common Nutritional Vocabulary - From Food Production to Diet" } ], "products": [ { "id": "cdno.owl", "name": "Compositional Dietary Nutrition Ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/cdno.owl" }, { "id": "cdno.obo", "name": "Compositional Dietary Nutrition Ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/cdno.obo" } ], "taxon": null, "date_released": "2026-02-16T12:02:37.092401", "date_created": "2026-02-16T12:02:37.092407", "home_page": "https://cdno.info/", "version": null, "has_ontology_language": "OWL", "nb_classes": 2109, "nb_individuals": 53, "nb_properties": 167, "max_depth": 11, "max_children": 37, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "71d37368511d695a68f73eaf742076c8" } }, { "acronym": "CDO", "name": "Chinese Diabetes Mellitus Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5966, "download_url": "media/ontologies/CDO/6/cdo.owl", "submission_id": 6, "domain": null, "description": "Note: The abbreviation of Chinese Diabetes Mellitus Ontology was changed to CDMO.\r\nCDMO is an OWL 2 ontology designed to cover the diabetes mellitus knowledge represented in Chinese language. The ontology is based on BFO and OGMS. In addition, the top hierarchical structure was adapted from SNOMED-CT, and strive for mapping with other medical ontologies in English, such as SNOMED-CT, HPO, DOID, DRON.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-03-24T00:00:00", "date_created": "2023-07-22T16:53:12", "home_page": null, "version": "3.0", "has_ontology_language": "OWL", "nb_classes": 3752, "nb_individuals": 0, "nb_properties": 182, "max_depth": 8, "max_children": 196, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DRMO", "name": "Dental Restorative Material Ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "BMHO", "name": "Brazilian Mental Health Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2744, "download_url": "media/ontologies/BMHO/7/bmho.owl", "submission_id": 7, "domain": null, "description": "Esta ontologia foi desenvolvida para auxiliar na gestão da rede de atenção em saúde mental no contexto do Brasil, a fim de proporcionar uma estrutura semântica que pode ser utilizada para criação de ferramentas computacionais inteligentes, permitindo a integração e interoperabilidade de bases de dados independentes e possibilitando a geração de indicadores relevantes para a saúde mental, visando melhorar a tomada de decisão e o planejamento público, aumentando a eficiência e eficácia dos serviços prestados à comunidade.", "documentation": null, "publication": "https://www.sciencedirect.com/science/article/pii/S187705091831651X", "publications": null, "products": null, "taxon": null, "date_released": "2019-07-10T00:00:00", "date_created": "2019-07-10T21:49:16", "home_page": "https://saudeconectada.org/", "version": "1", "has_ontology_language": "OWL", "nb_classes": 280, "nb_individuals": 21, "nb_properties": 68, "max_depth": 7, "max_children": 19, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CABRO", "name": "Computer Assisted Brain Injury Rehabilitation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 372, "download_url": "media/ontologies/CABRO/1/cabro.owl", "submission_id": 1, "domain": null, "description": "a web ontology for the semantic representation of the computer assisted brain trauma rehabilitation domain. This is a novel and emerging domain, since it employs the use of robotic devices, adaptation software and machine learning to facilitate interactive, adaptive and personalized rehabilitation care, patient monitoring and assisted living. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-03-01T08:00:00", "date_created": "2013-03-29T16:37:22", "home_page": null, "version": "0.5", "has_ontology_language": "OWL", "nb_classes": 59, "nb_individuals": 4, "nb_properties": 13, "max_depth": 3, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CAO", "name": "Clusters of Orthologous Groups (COG) Analysis Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 232, "download_url": "media/ontologies/CAO/3/cao.owl", "submission_id": 3, "domain": null, "description": "CAO ontology is designed for supporting the COG enrichment study by using Fisher's exact test", "documentation": null, "publication": "http://www.hegroup.org/docs/OntoCOG_ICBO-2011_Proceeding.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2011-10-10T07:00:00", "date_created": "2011-10-13T15:08:46", "home_page": "http://cao.sourceforge.net/", "version": "1.4", "has_ontology_language": "OWL", "nb_classes": 205, "nb_individuals": 38, "nb_properties": 47, "max_depth": 10, "max_children": 27, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CAROLIO", "name": "Caroli's Disease and Syndrome Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6383, "download_url": "media/ontologies/CAROLIO/1/carolio.owl", "submission_id": 1, "domain": null, "description": "We present CaroliO, an ontology for Caroli's disease and syndrome, aimed at enhancing the diagnosis and treatment of these rare liver conditions. Our work addresses the pressing need for structured knowledge resources in the field of rare diseases, which often present significant diagnostic and treatment challenges due to limited information.\r\n\r\nWe developed our ontology in two versions: CaroliO VB, which is the Basic ontology; and CaroliO VA, the Applied Version, which includes more complex axioms i.e. closure axioms and axioms that indicate combinations of scenarios among symptoms, signs, treatments, and outcomes. The Basic Version follows the underlying Open World Assumption and is suitable for ontologists and future researches, while the Applied Version includes more complex axioms to better reflect real world decision making in diagnosis and choosing treatments for Caroli’s disease and syndrome based on our current knowledge.", "documentation": "https://github.com/TootooniLab/CaroliO/blob/main/RELEASES.md", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-12T00:00:00", "date_created": "2024-02-01T21:55:40", "home_page": "https://github.com/TootooniLab/CaroliO", "version": "2.2", "has_ontology_language": "OWL", "nb_classes": 87, "nb_individuals": 0, "nb_properties": 11, "max_depth": 9, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CDOH", "name": "Commercial determinant of Health Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6767, "download_url": "media/ontologies/CDOH/1/cdoh.owl", "submission_id": 1, "domain": null, "description": "Commercial factors including the production, distribution, and marketing of goods and services, may exert a substantial influence on health outcomes. This ontology covers concepts and relationships relevant to non-clinical factors resulting from commercial determinants of health(CDoH).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-09-13T00:00:00", "date_created": "2024-07-19T10:31:54", "home_page": null, "version": "v1", "has_ontology_language": "OWL", "nb_classes": 357, "nb_individuals": 15, "nb_properties": 41, "max_depth": 6, "max_children": 21, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CASE-BASE-ONTO", "name": "Case-base ontology for gastric dystemperament in Persian medicine", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4485, "download_url": "media/ontologies/CASE-BASE-ONTO/1/case-base-onto.owl", "submission_id": 1, "domain": null, "description": "The case-base ontology was developed for a CBR system to diagnose gastric dystemperament in the Persian medicine.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-05-14T00:00:00", "date_created": "2021-05-15T02:53:31", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 71, "nb_individuals": 57, "nb_properties": 60, "max_depth": 3, "max_children": 16, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CEDARVS", "name": "CEDAR Value Sets", "status": "Classified", "topics": null, "species": null, "submission": { "id": 306, "download_url": "media/ontologies/CEDARVS/4/cedarvs.owl", "submission_id": 4, "domain": null, "description": "Value Sets used by the CEDAR project", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-24T00:00:00", "date_created": "2015-11-04T23:17:21", "home_page": "http://cedar.stanford.edu", "version": "0.2.2", "has_ontology_language": "OWL", "nb_classes": 34, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 12, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OCS", "name": "A Foundational Ontology for Computational Sociology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7671, "download_url": "media/ontologies/OCS/4/ocs.owl", "submission_id": 4, "domain": null, "description": "The history of computational sociology extends over the last 4.5 decades; its roots can perhaps be found in general systems theory and structural functionalism. Ontologies have been created in a wide range of subject areas and their number and application areas are dramatically growing. However, it can be considered quite well-founded to assume that no ontology has been created in the general sociological subject area so far. \r\n\r\nThe OCS (Ontology for Computational Sociology) mentioned in the title makes a modest attempt at this, hoping that true experts in the subject area will end the topic itself (creating and further developing sociological ontologies) interesting. Therefore, let us quote modestly the esteemed Basel mathematician Johann Bernoulli, Opera Omnia, 67, Tom. I.: \"Problema novum ad cuius solutionem sociologi invitantur.\" Keywords Computational sociology; ontology; Java-based application. , The ontology contains 701 classes (BFO-2020: 36, domain: 665) describing essential concepts of sociology", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-10-15T01:11:29", "date_created": "2025-10-14T00:00:00", "home_page": "https://www.edithlaszny.eu/", "version": null, "has_ontology_language": "OWL", "nb_classes": 701, "nb_individuals": 938, "nb_properties": 319, "max_depth": 7, "max_children": 13, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGR", "name": "Ontology of Geographical Region", "status": "Classified", "topics": null, "species": null, "submission": { "id": 329, "download_url": "media/ontologies/OGR/2/ogr.owl", "submission_id": 2, "domain": null, "description": "This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS. It used with other ontologies to represent the genetic susceptibility factors of diabetes.", "documentation": null, "publication": "http://www.med.kobe-u.ac.jp/journal/contents/55/E53.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2008-03-08T08:00:00", "date_created": "2009-05-20T02:55:37", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 39, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 14, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOSTAR", "name": "Digital e-health startup Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7983, "download_url": "media/ontologies/ONTOSTAR/1/ontostar.owl", "submission_id": 1, "domain": null, "description": "We are introducing an ontology specifically designed for the e‑health startup domain called OntoStar. ", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-18T00:00:00", "date_created": "2026-02-18T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 189, "nb_individuals": 0, "nb_properties": 10, "max_depth": 5, "max_children": 29, "avg_children": 11, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "cmecstest", "name": "cmecstest", "status": "Classified", "topics": [ "marine ecology" ], "species": [], "submission": { "id": 6937, "download_url": "media/ontologies/cmecstest/1/cmecstest.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-10-17T17:11:06.878258", "date_created": "2024-10-17T17:11:06.878253", "home_page": null, "version": "1.1.0", "has_ontology_language": "OWL", "nb_classes": 1689, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 70, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RCTONT", "name": "Randomized Controlled Trials Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 126, "download_url": "media/ontologies/RCTONT/1/rctont.owl", "submission_id": 1, "domain": null, "description": "We developed and evaluated an ontology\r\nspecifically for Randomized Controlled Trials in order to facilitate the production of systematic reviews and metaanalysis.", "documentation": null, "publication": "http://www.ncbi.nlm.nih.gov/pubmed/20953737", "publications": null, "products": null, "taxon": null, "date_released": "2010-11-01T07:00:00", "date_created": "2011-10-15T01:34:43", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 187, "nb_individuals": 45, "nb_properties": 50, "max_depth": 5, "max_children": 13, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CEI10", "name": "CEI10_Garrahan", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1672, "download_url": "media/ontologies/CEI10/7/cei10.owl", "submission_id": 7, "domain": null, "description": "Base de Datos test", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-03-17T00:00:00", "date_created": "2018-07-19T00:54:38", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 14502, "nb_individuals": 1, "nb_properties": 0, "max_depth": 5, "max_children": 35, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CMEO", "name": "Clinical Metadata Exploration Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7854, "download_url": "media/ontologies/CMEO/1/cmeo.owl", "submission_id": 1, "domain": null, "description": "CMEO (Clinical Metadata Exploration Ontology) is an ontology for representing and querying study- and variable-level metadata from clinical cohort studies in a consistent, machine-interpretable way. CMEO models the semantics of data elements (variables) and their key metadata needed for cross-cohort discovery and harmonization—such as human-readable labels/definitions, domain/type information (e.g., condition, measurement, medication), permissible categorical values, units, visit/timepoint context, derivation/provenance (e.g., computed variables), and basic descriptive statistics. It is designed to support metadata-driven tasks including cohort cataloguing, feasibility assessment, study retrieval, and identification of compatible variables across studies—without requiring access to patient-level data. It is intended to interoperate with controlled vocabularies and common clinical terminologies by linking data elements and value sets to external concept identifiers (e.g., OMOP concept IDs, SNOMED CT, LOINC, RxNorm/ATC, UCUM) while remaining model-agnostic (i.e., not tied to a single CDM).\r\n, and identification of compatible variables across studies—without requiring access to patient-level data.\n\nCMEO is intended to interoperate with controlled vocabularies and common clinical terminologies by linking data elements and value sets to external concept identifiers (e.g., not tied to a single CDM).", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-01-05T00:00:00", "date_created": "2026-01-05T00:00:00", "home_page": null, "version": "version 2", "has_ontology_language": "OWL", "nb_classes": 374, "nb_individuals": 26, "nb_properties": 66, "max_depth": 11, "max_children": 46, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CMR-QA", "name": "Cardiovascular Magnetic Resonance Quality Assessment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2018, "download_url": "media/ontologies/CMR-QA/1/cmr-qa.owl", "submission_id": 1, "domain": null, "description": "CMR-QA ontology aims at defining the semantics of free-text quality assessment annotations associated to Cardiac\r\nMagnetic Resonance (CMR) Imaging.", "documentation": null, "publication": "https://github.com/ernestojimenezruiz/CMR-QA-Semantic-Layer/", "publications": null, "products": null, "taxon": null, "date_released": "2018-11-01T00:00:00", "date_created": "2018-11-19T11:34:47", "home_page": "https://github.com/ernestojimenezruiz/CMR-QA-Semantic-Layer/", "version": "0.4.5", "has_ontology_language": "OWL", "nb_classes": 111, "nb_individuals": 0, "nb_properties": 26, "max_depth": 6, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CBLAYERH", "name": "NeuroMorpho.Org Cerebellum layers", "status": "Classified", "topics": null, "species": null, "submission": { "id": 144, "download_url": "media/ontologies/CBLAYERH/2/cblayerh.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of layers in the Cerebellum of Gnathostomes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:25:25", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 4, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BERKAH", "name": "berkah", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "O3", "name": "Operational Ontology for Oncology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7670, "download_url": "media/ontologies/O3/4/o3.owl", "submission_id": 4, "domain": null, "description": "The Operational Ontology for Oncology is formalized, machine-readable knowledge representation that defines and standardizes the concepts, terms, value sets and relationships used in cancer care. O3 is an operational ontology, meaning that its format and content is optimized for clinical process implementation with current clinical data systems. It is formed through multi-professional society based, multi-institutional consensus formation with physicians, physicists, informaticists and other domain experts in the context of the American Association of Physicists in Medicine (AAPM). It is formed in collaboration with and has been endorse by multiple professional societies including American Society of Radiation Oncology (ASTRO), Canadian Association for Radiation Oncology (CARO) and the European Society for Therapeutic Radiation Oncology (ESTRO). Its primary purpose is to ensure semantic interoperability of comprehensive data sets from disparate sources like electronic health records (EHRs), lab systems, and research databases to be accurately aggregated and understood by different systems. This is particularly crucial for a complex and data-rich field like oncology. \r\n\r\nO3 was first published in the article, Operational Ontology for Oncology (O3): A Professional Society-Based, Multistakeholder, Consensus-Driven Informatics Standard Supporting Clinical and Research Use of Real-World Data From Patients Treated for Cancer. Int J Radiat Oncol Biol Phys. 2023 Nov 1;117(3):533-550. doi: 10.1016/j.ijrobp.2023.05.033. Epub 2023 May 26. PMID: 37244628; PMCID: PMC10741247.\r\n\r\nThe home web site is at o3standard.net. The site is used as the main mechanism for gathering public comments and accessing future, current and prior versions of the ontology in json format.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-10-16T00:00:00", "date_created": "2025-10-16T00:00:00", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 1721, "nb_individuals": 0, "nb_properties": 14, "max_depth": 4, "max_children": 125, "avg_children": 17, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AERO", "name": "Adverse Event Reporting Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 425, "download_url": "media/ontologies/AERO/45/aero.owl", "submission_id": 45, "domain": null, "description": "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events.", "documentation": "http://purl.obolibrary.org/obo/aero", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-09-13T01:10:52", "date_created": "2013-09-13T01:10:52", "home_page": "http://purl.obolibrary.org/obo/aero", "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 429, "nb_individuals": 32, "nb_properties": 76, "max_depth": 9, "max_children": 55, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CBO", "name": "Cell Behavior Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 762, "download_url": "media/ontologies/CBO/22/cbo.owl", "submission_id": 22, "domain": null, "description": "The Cell Behavior Ontology (CBO) describes multi-cell computational models. In particular to describe both the existential behaviors of cells (spatiality, growth, movement, adhesion, death, ...) and computational models of those behaviors.", "documentation": "http://cbo.biocomplexity.indiana.edu/cbo/", "publication": "http://bioinformatics.oxfordjournals.org/content/early/2014/05/18/bioinformatics.btu210.long", "publications": null, "products": null, "taxon": null, "date_released": "2017-10-11T01:00:52", "date_created": "2017-10-11T01:00:52", "home_page": "http://cbo.biocomplexity.indiana.edu/cbo/", "version": "Version 1.1.0 added classes for OMERO-Tiff files similar to those for VTK files \nVersion 1.0.0 is the initial release of the Cell Behavior Ontology (CBO). \nVersion 1.0.1 added Journal citation for the Cell Behavior Ontology (CBO). \nVersion 1.0.2 corrected a few annotations that had \"snap:process\" that should be \"span:process\".\nVersion 1.0.3 corrected/changed class \"SpacialExclusive\" to \"SpatialExclusive\" and property \"has_Quality\" to \"has_quality\".", "has_ontology_language": "OWL", "nb_classes": 246, "nb_individuals": 0, "nb_properties": 41, "max_depth": 5, "max_children": 14, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OA", "name": "Web Annotation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 62, "download_url": "media/ontologies/OA/4/oa.owl", "submission_id": 4, "domain": null, "description": "The Web Annotation Data Model specification describes a structured model and format to enable annotations to be shared and reused across different hardware and software platforms. Annotations are typically used to convey information about a resource or associations between resources. Simple examples include a comment or tag on a single web page or image, or a blog post about a news article.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-18T01:07:10", "date_created": "2017-07-18T22:34:48", "home_page": "https://www.w3.org/TR/annotation-model/", "version": "2016-11-12T21:28:11Z", "has_ontology_language": "OWL", "nb_classes": 25, "nb_individuals": 17, "nb_properties": 19, "max_depth": 1, "max_children": 11, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LATESTGOVTJOBS", "name": "Latest Govt Jobs", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "OAE", "name": "Ontology of Adverse Events", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8105, "download_url": "media/ontologies/OAE/179/oae.owl", "submission_id": 179, "domain": "health", "description": "A biomedical ontology in the domain of adverse events", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "oae.owl", "ontology_purl": "http://purl.obolibrary.org/obo/oae.owl" } ], "taxon": null, "date_released": "2026-04-13T12:52:03.878599", "date_created": "2026-04-13T12:52:03.878608", "home_page": "https://github.com/OAE-ontology/OAE/", "version": null, "has_ontology_language": "OWL", "nb_classes": 10589, "nb_individuals": 4, "nb_properties": 120, "max_depth": 15, "max_children": 192, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "10b27c7cf441755721d5b200bcf86965" } }, { "acronym": "OBEST", "name": "Ontology of Bioethics and Ethics of Science & Technology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7726, "download_url": "media/ontologies/OBEST/2/obest.owl", "submission_id": 2, "domain": null, "description": "The Ontology of Bioethics and Ethics of Science & Technology (OBEST) is an ontology that examines moral and ethical norms, basic ethical principles and their application in biological research, and scientific and technological practices. This constitutes a significant research area within the field of Dialectics of Nature.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-05T00:00:00", "date_created": "2025-11-05T00:00:00", "home_page": "https://github.com/OBEST-ontology/OBEST", "version": "1.0.1", "has_ontology_language": "OWL", "nb_classes": 1386, "nb_individuals": 31, "nb_properties": 91, "max_depth": 16, "max_children": 81, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_ES", "name": "ORDO SPANISH", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7826, "download_url": "media/ontologies/ORDO_ES/17/ordo_es.owl", "submission_id": 17, "domain": null, "description": "This ontology is the spanish version of ORDO with definition, labels and synonyms in spanish.", "documentation": "https://www.orphadata.com/ordo/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-20T12:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "4.8", "has_ontology_language": "OWL", "nb_classes": 16036, "nb_individuals": 0, "nb_properties": 13, "max_depth": 11, "max_children": 4477, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_FR", "name": "ORDO FRENCH", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7827, "download_url": "media/ontologies/ORDO_FR/19/ordo_fr.owl", "submission_id": 19, "domain": null, "description": "This ontology is the french version of ORDO with definition, labels and synonyms in french.\r\nCette ontologie est la version française d'ORDO avec les définitions, labels et synonymes en français.", "documentation": "https://www.orphadata.com/ordo/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-20T12:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "4.8", "has_ontology_language": "OWL", "nb_classes": 16036, "nb_individuals": 0, "nb_properties": 13, "max_depth": 11, "max_children": 4477, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_IT", "name": "ORDO ITALIAN", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7828, "download_url": "media/ontologies/ORDO_IT/14/ordo_it.owl", "submission_id": 14, "domain": null, "description": "This ontology is the italian version of ORDO with definition, labels and synonyms in italian. ", "documentation": "https://www.orphadata.com/ordo/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-20T12:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "4.8", "has_ontology_language": "OWL", "nb_classes": 16036, "nb_individuals": 0, "nb_properties": 13, "max_depth": 11, "max_children": 4477, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CCONT", "name": "Cell Culture Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 83, "download_url": "media/ontologies/CCONT/3/ccont.owl", "submission_id": 3, "domain": null, "description": "CCONT is an ontology for the formal representation of cell lines and their correspnding culture conditions.", "documentation": null, "publication": "http://www.ncbi.nlm.nih.gov/pubmed/23144907", "publications": null, "products": null, "taxon": null, "date_released": "2014-07-24T01:00:21", "date_created": "2014-07-24T01:00:22", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 19991, "nb_individuals": 0, "nb_properties": 61, "max_depth": 14, "max_children": 1819, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CCTOO", "name": "Cancer Care: Treatment Outcome Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1705, "download_url": "media/ontologies/CCTOO/2/cctoo.obo", "submission_id": 2, "domain": null, "description": "The Cancer Care: Treatment Outcomes Ontology (CCTOO) catalogues various clinical endpoints used in evaluating outcomes of cancer treatment. In addition to a vocabulary list, CCTOO also curates the dependencies between individual concepts, in form of production rules, for translating clinical findings recorded in the electronic medical records (EMR) into literature-based concepts. An earlier version of this ontology was presented as a scientific abstract alongside the American Society of Clinical Oncology annual meeting 2017, Chicago, USA (J Clin Oncol 2017; 35 suppl; abstr e18137).", "documentation": null, "publication": "http://ascopubs.org/doi/abs/10.1200/JCO.2017.35.15_suppl.e18137", "publications": null, "products": null, "taxon": null, "date_released": "2018-05-11T00:00:00", "date_created": "2018-07-29T09:27:39", "home_page": null, "version": "releases/2018-05-11", "has_ontology_language": "OBO", "nb_classes": 1133, "nb_individuals": 0, "nb_properties": 6, "max_depth": 6, "max_children": 729, "avg_children": 28, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SEWAELFJOGJA53", "name": "Sewa Elf Jogja 6", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "ETHANC", "name": "ETHANC", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4646, "download_url": "media/ontologies/ETHANC/16/ethanc.skos", "submission_id": 16, "domain": null, "description": "Antenatal care registry for Ethiopia", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-07-05T00:00:00", "date_created": "2021-08-24T16:46:57", "home_page": null, "version": "14", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 30, "nb_properties": 12, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "bioscience", "name": "123", "status": "Unknown", "topics": [ "science" ], "species": [ "1234" ], "submission": null }, { "acronym": "SEWAELFJOGJA31", "name": "Sewa Elf Jogja 7", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "WISATAJOGJA29", "name": "Paket Wisata Jogja 6", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "DATACITE-VOCAB", "name": "DATACITE V4.4", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5081, "download_url": "media/ontologies/DATACITE-VOCAB/5/datacite-vocab.skos", "submission_id": 5, "domain": null, "description": "Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is Datacite Controlled Vocabulary. This controlled vocabulary is produced based on description of Datacite Schema V4.4. The work of creating this controlled vocabulary is part of FAIRware project which if funded by RoRi.\r\n\r\nsheet2rdf is used to build Datacite Controlled Vocabulary, while PURL, is used to persist and resolve identifiers via BioPortal for the vocabulary terms.", "documentation": "https://github.com/metadatacenter/datacite-controlled-vocabulary", "publication": "https://github.com/metadatacenter/datacite-controlled-vocabulary", "publications": null, "products": null, "taxon": null, "date_released": "2022-05-14T01:03:34", "date_created": "2022-05-14T01:03:36", "home_page": "https://github.com/metadatacenter/datacite-controlled-vocabulary", "version": "0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 132, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SEWAHIACEJOGJA55", "name": "Sewa Hiace Jogja 6", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "WISATAJOGJA52", "name": "Paket Wisata Jogja 5", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "DATAHUB", "name": "RADx Data Hub Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7337, "download_url": "media/ontologies/DATAHUB/4/datahub.owl", "submission_id": 4, "domain": null, "description": "The RADx Data Hub Ontology provides a formally structured vocabulary to describe key concepts within the RADx Data Hub. <br><br>\r\n\r\nThe primary purpose of the ontology is to:\r\n\r\n1) Document key terms used in the Data Hub\r\nThe ontology lists and organizes the main types of entities and relationships that are relevant to the RADx Data Hub. This helps ensure that core terms are recorded in a consistent and reusable way.\r\n\r\n2) Clarify the meaning of those terms\r\nEach term is defined to reduce confusion and make its intended meaning clear to both technical and non-technical users. This helps support consistent use across teams and tools.\r\n\r\n3) Provide synonyms and alternate labels to support consistent usage\r\nThe ontology includes common synonyms or alternative names for terms to account for variation in how different groups of users refer to the same thing. This supports alignment across documentation, user interfaces, and data submission processes.\r\n\r\n4) Maintain a glossary of acronyms commonly used in RADx\r\nFrequently used acronyms are included as part of the ontology, linked to their full forms and definitions. This helps reduce ambiguity and supports clearer communication across documentation, interfaces, and stakeholder groups.\r\n<br><br>\r\nThis shared vocabulary, that is provided and defined by the ontology, serves as the source of truth for terminology used across metadata records, user interfaces, documentation, and program communications.\r\n", "documentation": "https://github.com/bmir-radx/radx-datahub-ontology", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-03-25T00:00:00", "date_created": "2025-05-06T00:00:00", "home_page": null, "version": "0.9.3", "has_ontology_language": "OWL", "nb_classes": 112, "nb_individuals": 19, "nb_properties": 1, "max_depth": 6, "max_children": 24, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DBM", "name": "DBM Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7916, "download_url": "media/ontologies/DBM/1/dbm.owl", "submission_id": 1, "domain": null, "description": "An ontology for the Drug Bureau of Macedonia (DBM)., An ontology for describing brand-name drugs.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2014-09-01T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 0, "nb_properties": 2, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "dcterms", "name": "dcterms", "status": "Classified", "topics": null, "species": null, "submission": { "id": 491, "download_url": "media/ontologies/dcterms/1/dcterms.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl. It contains terms from the http://purl.org/dc/terms/ namespace that are included in the vivo ontology.\r\n\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T09:58:46", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 5, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DEMLAB", "name": "Dem@Care Lab Ontology for Dementia Assessment", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7917, "download_url": "media/ontologies/DEMLAB/1/demlab.owl", "submission_id": 1, "domain": null, "description": "The ontology has been developed in the framework of the Dem@Care project for representing the experimentation protocol towards diagnostic support and assessment of Dementia in a controlled environment. The aim of the protocol is to provide a brief overview of their health status of the participants during consultation (cognition, behaviours and function), and to correlate the system (sensor) data with the data collected using typical dementia care assessment tools., and to correlate the system (sensor) data with the data collected using typical dementia care assessment tools.\n\nThe ontology describes the basic Steps of the experimentation protocol (Directed Activities, Semi-directed Activities and Free Discussion with the Clinician), the Tasks that are involved, as well as the measurement types relevant to each Task. The defined protocol can be reused and further extended, adding new steps, tasks and measured data.\n\nDocumentation regarding the ontology vocabulary can be found at http://www.demcare.eu/ontologies/demlab.html", "documentation": "http://www.demcare.eu/downloads/D8.1ExperimentationProtocols.pdf", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2014-09-02T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": "http://www.demcare.eu/ontologies/demlab.html", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 119, "nb_individuals": 32, "nb_properties": 111, "max_depth": 4, "max_children": 40, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DEN", "name": "Salmonella vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7317, "download_url": "media/ontologies/DEN/1/den.owl", "submission_id": 1, "domain": null, "description": "This is a controlled vocabulary for Salmonella serotype", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-04-22T00:00:00", "date_created": "2025-04-22T14:09:25", "home_page": null, "version": "v1.3", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 8, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DIAB", "name": "BioMedBridges Diabetes Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 552, "download_url": "media/ontologies/DIAB/73/diab.owl", "submission_id": 73, "domain": null, "description": "Diabetes ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-11-27T00:00:00", "date_created": "2015-11-27T13:59:57", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 375, "nb_individuals": 0, "nb_properties": 4, "max_depth": 2, "max_children": 365, "avg_children": 62, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DICOM", "name": "Healthcare metadata - DICOM ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7918, "download_url": "media/ontologies/DICOM/2/dicom.owl", "submission_id": 2, "domain": null, "description": "Ontology for healthcare metadata - especially metadata found in DICOM files (Digital Imaging and Communications in Medicine, see http://dicom.nema.org/). Author: Michael Brunnbauer, Bonubase GmbH (www.bonubase.com). The author's email address is brunni@netestate.de. See http://purl.org/healthcarevocab/v1help for explanations.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-04-29T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "v2015-01-11", "has_ontology_language": "OWL", "nb_classes": 1593, "nb_individuals": 0, "nb_properties": 2529, "max_depth": 1, "max_children": 1593, "avg_children": 1593, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OSDI", "name": "Ontology for the Simulation of Diseases", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7893, "download_url": "media/ontologies/OSDI/2/osdi.owl", "submission_id": 2, "domain": null, "description": "OSDi is an ontology designed to help the health technology assessment (HTA) community automate multiple stages in the development of economic evaluations. OSDi includes concepts and relationships that model the HTA domain, from characterizing diseases or affected populations to assessing interventions. OSDi serves as a supporting framework for the structured extraction of knowledge from literature and the automated generation of computational models using decision trees or discrete-event simulation., Ontología diseñada para recopilar e inferir los parámetros necesarios para crear una evaluación de tecnología sanitaria basada en simulación, Ontology designed for collecting and inferring the parameters required to create a simulation-based Health Technology Assesment", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-01-16T00:00:00", "date_created": "2026-01-16T00:00:00", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 83, "nb_individuals": 43, "nb_properties": 79, "max_depth": 6, "max_children": 21, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "QUANTUM-MIND", "name": "Quantum Mind Framework", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7964, "download_url": "media/ontologies/QUANTUM-MIND/4/quantum-mind.owl", "submission_id": 4, "domain": null, "description": "Formal architecture for modeling state-field transitions in human behavioral systems using sigmoid-based activation. Operationalizes the interaction between Directed Focus (f), Raw Perceptual Imprint (alpha), and Perceived Meaning (beta) to calculate the formal observation variable Psi. Foundational for Behavioral and Cognitive Ontology (BCO), providing machine-readable logic for AI ingestion and predictive psychological modeling.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-11T00:00:00", "date_created": "2026-02-11T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 395, "nb_individuals": 70, "nb_properties": 138, "max_depth": 9, "max_children": 26, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RDA-ISSUANCE", "name": "RDA Mode of Issuance", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7986, "download_url": "media/ontologies/RDA-ISSUANCE/12/rda-issuance.owl", "submission_id": 12, "domain": null, "description": "RDA vocabulary for mode of issuance of a resource (single unit, multipart monograph, etc.)", "documentation": "https://www.rdaregistry.info/termList/ModeIssue/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-24T02:13:39", "date_created": "2026-02-23T00:00:00", "home_page": "https://www.rdaregistry.info/termList/ModeIssue/", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 8, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RDAO", "name": "Rare Diseases Awareness Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7989, "download_url": "media/ontologies/RDAO/5/rdao.owl", "submission_id": 5, "domain": null, "description": "The Rare Diseases Awareness Ontology was developed using the Basic Formal Ontology (BFO) framework to support education and awareness processes about rare diseases. It is a semantic data structure that organizes and categorizes specific information about these processes, facilitating access and understanding of the data. This ontology includes key concepts from this domain. Furthermore, it incorporates information to train health professionals, family members, and patients, promoting awareness and more comprehensive education.\r\nThrough data modeling and relationships between these concepts, the ontology allows the creation of interactive and personalized educational resources, in addition to facilitating interoperability between health information systems. With accessible language and visual tools, the system supports disseminating knowledge about rare diseases.\r\nThis study is supported by the São Paulo Research Foundation (FAPESP) as part of the Public Policy Research Program (grant number 2023/10203-8, managed by Domingos Alves). Diego Yamada is also supported by FAPESP (grant number 2024/06751-2).", "documentation": "https://github.com/BFO-ontology/BFO/tree/master/src/tools/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2024-10-31T00:00:00", "date_created": "2026-02-18T00:00:00", "home_page": "https://github.com/BFO-ontology/BFO", "version": "3.2", "has_ontology_language": "OWL", "nb_classes": 259, "nb_individuals": 0, "nb_properties": 48, "max_depth": 9, "max_children": 19, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RH-MESH", "name": "Robert Hoehndorf Version of MeSH", "status": "Classified", "topics": null, "species": null, "submission": { "id": 253, "download_url": "media/ontologies/RH-MESH/3/rh-mesh.owl", "submission_id": 3, "domain": null, "description": "Medical Subjects Headings Thesaurus 2014, Modified version.\r\n\r\nThis is an OWL representation of MeSH so that it can be integrated with other ontologies represented in OWL. It contains all terms that are in MeSH and in the MeSH concept tree, including the pharmacological actions (represented as subclass relations).\r\n\r\nConcepts in the MeSH concept tree are merged with MeSH term ids.\r\n\r\n<p><p>\r\n--------------------------\r\n<p>\r\n\r\nNote that, while this ontology is composed of MeSH terms, it does not correspond directly to UMLS MeSH. In particular, a single term in UMLS MeSH often results in multiple classes in this ontology.\r\n\r\n\r\nFor example, in MeSH there is a single term with the label \"Heart\". The internal code (unique identifier) for this term is A07.541. In \r\nthis ontology there are two entirely different terms, both of which have the label \"Heart\". The codes for these terms are A07.541 \r\nand D006321. \r\n", "documentation": null, "publication": "http://leechuck.de/publications.html", "publications": null, "products": null, "taxon": null, "date_released": "2014-04-21T23:50:38", "date_created": "2014-04-21T23:50:39", "home_page": "https://code.google.com/p/pharmgkb-owl/", "version": "2014", "has_ontology_language": "OWL", "nb_classes": 305349, "nb_individuals": 0, "nb_properties": 1, "max_depth": 12, "max_children": 4006, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RNAO", "name": "RNA ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 322, "download_url": "media/ontologies/RNAO/4/rnao.obo", "submission_id": 4, "domain": null, "description": "The central aim of the RNA Ontology Consortium (ROC) is to develop an ontology to capture all aspects of RNA - from primary sequence to alignments, secondary and tertiary structure from base pairing and base stacking to sophisticated motifs.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-22T01:06:31", "date_created": "2016-08-05T00:13:40", "home_page": "https://github.com/BGSU-RNA/rnao", "version": "r113", "has_ontology_language": "OBO", "nb_classes": 692, "nb_individuals": 0, "nb_properties": 112, "max_depth": 1, "max_children": 51, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RXNORM", "name": "RxNORM", "status": "Classified", "topics": null, "species": null, "submission": { "id": 353, "download_url": "media/ontologies/RXNORM/12/rxnorm.umls", "submission_id": 12, "domain": null, "description": "RxNorm Vocabulary", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:23", "date_created": "2017-02-06T21:26:23", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 115514, "nb_individuals": 0, "nb_properties": 44, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SEPIO", "name": "Scientific Evidence and Provenance Information Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5910, "download_url": "media/ontologies/SEPIO/4/sepio.owl", "submission_id": 4, "domain": "investigations", "description": "An ontology for representing the provenance of scientific claims and the evidence that supports them.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "sepio.owl", "title": "SEPIO", "ontology_purl": "http://purl.obolibrary.org/obo/sepio.owl" } ], "taxon": null, "date_released": "2023-07-03T15:37:01.486604", "date_created": "2023-07-03T15:37:01.486619", "home_page": "https://github.com/monarch-initiative/SEPIO-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 127, "nb_individuals": 21, "nb_properties": 211, "max_depth": 11, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "8fb50168990bedd0dd8fd3e84f994ae3" } }, { "acronym": "SIMM", "name": "In Silico Methodologies Ontology for MAATrica metric", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6562, "download_url": "media/ontologies/SIMM/1/simm.obo", "submission_id": 1, "domain": null, "description": "MAATrica is a novel metric for assessing the coherence of methodologies in research papers within the fields of medicinal and nutraceutical chemistry. MAATrica employs user-controlled and customizable ontologies (in silico, in vitro and in vivo), enabling personalized analysis of research papers in the fields of medicinal and nutraceutical chemistry.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-04-21T00:00:00", "date_created": "2024-04-21T15:14:15", "home_page": null, "version": null, "has_ontology_language": "OBO", "nb_classes": 304, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 68, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SIO", "name": "Semanticscience Integrated Ontology", "status": "Classified", "topics": [], "species": [], "submission": { "id": 6486, "download_url": "media/ontologies/SIO/94/sio.owl", "submission_id": 94, "domain": null, "description": "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.", "documentation": "http://sio.semanticscience.org", "publication": "http://sio.semanticscience.org", "publications": null, "products": null, "taxon": null, "date_released": "2024-03-26T01:16:07", "date_created": "2024-03-26T01:16:10", "home_page": "http://sio.semanticscience.org", "version": "1.59", "has_ontology_language": "OWL", "nb_classes": 1584, "nb_individuals": 0, "nb_properties": 211, "max_depth": 13, "max_children": 118, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SITBAC", "name": "Situation-Based Access Control Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 147, "download_url": "media/ontologies/SITBAC/3/sitbac.owl", "submission_id": 3, "domain": null, "description": "Context-based healthcare access-control policies", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-01-05T08:00:00", "date_created": "2011-02-22T06:31:24", "home_page": "http://mis.hevra.haifa.ac.il/~morpeleg/", "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 178, "nb_individuals": 163, "nb_properties": 74, "max_depth": 5, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SMO", "name": "Syrian Movies Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5042, "download_url": "media/ontologies/SMO/1/smo.owl", "submission_id": 1, "domain": null, "description": "Syrian Movies Ontology, For Education.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-04-13T00:00:00", "date_created": "2022-04-13T19:08:50", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 6, "nb_individuals": 65, "nb_properties": 10, "max_depth": 2, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NCRO", "name": "Non-Coding RNA Ontology", "status": "Incoherent", "topics": null, "species": null, "submission": { "id": 1033, "download_url": "media/ontologies/NCRO/13/ncro.owl", "submission_id": 13, "domain": "experiments", "description": "An ontology for non-coding RNA, both of biological origin, and engineered.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ncro/dev/ncro.owl", "title": "NCRO development version", "ontology_purl": "http://purl.obolibrary.org/obo/ncro/dev/ncro.owl" } ], "taxon": null, "date_released": "2017-12-13T09:56:29.516549", "date_created": "2017-12-13T09:56:29.516569", "home_page": "http://omnisearch.soc.southalabama.edu/OntologyFile.aspx", "version": null, "has_ontology_language": "OWL", "nb_classes": 3078, "nb_individuals": 18, "nb_properties": 27, "max_depth": 14, "max_children": 2484, "avg_children": 1157, "classifiable": true, "nb_inconsistent": 2484, "indexed": true, "md5sum": "ae04c24648d063b5674187d9b5654b69" } }, { "acronym": "DINTO", "name": "The Drug-Drug Interactions Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 619, "download_url": "media/ontologies/DINTO/5/dinto.owl", "submission_id": 5, "domain": null, "description": "DINTO is an OWL ontology that systematically organizes all drug-drug interaction (DDI) related information.\r\n\r\nDrug-drug interactions (DDIs) form a significant risk group for adverse effects associated with pharmaceutical treatment. These interactions are often reported in the literature, however, they are sparsely represented in machine-readable resources, such as online databases, thesauri or ontologies. DINTO is an ontology that describes and categorizes DDIs and all the possible mechanisms that can lead to them (including both pharmacodynamic and pharmacokinetic DDI mechanisms).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-26T00:00:00", "date_created": "2016-02-11T17:06:02", "home_page": "http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto", "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 28178, "nb_individuals": 0, "nb_properties": 90, "max_depth": 9, "max_children": 11555, "avg_children": 37, "classifiable": true, "nb_inconsistent": 1, "indexed": true, "md5sum": null } }, { "acronym": "SNMD_BC", "name": "Snomed neoplasm, breast cancer", "status": "Classified", "topics": null, "species": null, "submission": { "id": 323, "download_url": "media/ontologies/SNMD_BC/1/snmd_bc.owl", "submission_id": 1, "domain": null, "description": "This a subset of snomed-ct regarding neoplasm and hamartoma, based on Snomed clinical practice's used terms (Fondazione S.Maugeri anatomic pathology dep.). This subset is not to be meant exhaustive, it has been created in order to built a proper ontology for our project, ONCO-i2b2, through the NCBO Ontology Tools.", "documentation": null, "publication": "http://www.ncbi.nlm.nih.gov/pubmed/22536972", "publications": null, "products": null, "taxon": null, "date_released": "2011-11-22T08:00:00", "date_created": "2011-11-22T09:49:56", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 1493, "nb_individuals": 0, "nb_properties": 0, "max_depth": 9, "max_children": 397, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CONDOR", "name": "Liver Cancer Ontology Diagnosis Treatment", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6227, "download_url": "media/ontologies/CONDOR/1/condor.owl", "submission_id": 1, "domain": null, "description": "The CONDOR is a comprehensive framework designed to encapsulate the multifaceted aspects of liver cancer patient care. It encompasses essential elements ranging from patient profiles to disease classifications and treatment options. This ontology aims to streamline the process of liver cancer analysis and treatment, enabling more personalized and effective patient care strategies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-23T00:00:00", "date_created": "2023-11-23T21:51:06", "home_page": "https://www.ki.uni-stuttgart.de/departments/ac/research/projects/ATLAS/", "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 55, "nb_individuals": 1, "nb_properties": 9, "max_depth": 5, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COPPER", "name": "COntextualised and Personalised Physical activity and Exercise Recommendations", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7591, "download_url": "media/ontologies/COPPER/5/copper.owl", "submission_id": 5, "domain": null, "description": "The Contextualised and Personalised Physical activity and Exercise Recommendations (COPPER) ontology was created in order to support action and coping planning in the context of physical activity promotion by providing personalised recommendations for activities, activity context, barriers and coping strategies.", "documentation": null, "publication": "['https://doi.org/10.1186/s12966-025-01744-5']", "publications": null, "products": null, "taxon": null, "date_released": "2024-04-05T00:00:00", "date_created": "2025-09-09T00:00:00", "home_page": null, "version": "2025-10-07", "has_ontology_language": "OWL", "nb_classes": 363, "nb_individuals": 316, "nb_properties": 66, "max_depth": 13, "max_children": 21, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CO-WHEAT", "name": "Wheat Trait Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 637, "download_url": "media/ontologies/CO-WHEAT/1/co-wheat.obo", "submission_id": 1, "domain": null, "description": "This ontology defines traits of the International Wheat Information System (IWIS) database and wheat descriptor.", "documentation": "http://ontology.generationcp.org/", "publication": "http://pantheon.generationcp.org/", "publications": null, "products": null, "taxon": null, "date_released": "2010-08-11T07:00:00", "date_created": "2010-11-10T00:32:47", "home_page": "http://cropontology.org/", "version": "08.11.2010", "has_ontology_language": "OBO", "nb_classes": 176, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 37, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CRC-ONTO", "name": "Colorectal cancer ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6930, "download_url": "media/ontologies/CRC-ONTO/4/crc-onto.owl", "submission_id": 4, "domain": null, "description": "This ontology is an comprehensive approach, including various aspects associated with CRC disease. We developed this ontology as an assistive solution for enhancing the semantic interoperability among various Health Information Systems (HISs) in Iran having CRC data elements.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-09-22T00:00:00", "date_created": "2024-10-15T05:44:23", "home_page": null, "version": "1.00", "has_ontology_language": "OWL", "nb_classes": 418, "nb_individuals": 247, "nb_properties": 42, "max_depth": 5, "max_children": 29, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "cyber", "name": "stix", "status": "Unloadable", "topics": [], "species": [], "submission": { "id": 2726, "download_url": "media/ontologies/cyber/1/cyber.owl", "submission_id": 1, "domain": null, "description": "teste", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-07-10T18:24:25.454306", "date_created": "2019-07-10T18:24:25.454278", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 1303, "nb_individuals": 91, "nb_properties": 114, "max_depth": 8, "max_children": 97, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CRENO", "name": "Culture, Race, Ethnicity and Nationality Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6385, "download_url": "media/ontologies/CRENO/2/creno.owl", "submission_id": 2, "domain": null, "description": "This work undertakes the possibility of using the Web Ontology Language (OWL2) to describe concepts related to \"culture\", \"race\", \"ethnicity\", and \"nationality\" - concepts that are sometimes misunderstood/misused due to lack of standardization and biases. The project also attempts to link data relating to these broad concepts to health data, like cancer rates, and shed light on understanding health disparities that impact certain communities. This work is early in development and preliminary. ", "documentation": "https://github.com/UTHealth-Ontology/CRENO/tree/main/doc", "publication": "http://www.ncbi.nlm.nih.gov/pmc/articles/pmc10283130/", "publications": null, "products": null, "taxon": null, "date_released": "2024-02-05T00:00:00", "date_created": "2024-02-05T17:32:37", "home_page": "https://github.com/UTHealth-Ontology/CRENO", "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 1107, "nb_individuals": 32, "nb_properties": 183, "max_depth": 12, "max_children": 241, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DCAT3", "name": "DCAT3", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 6621, "download_url": "media/ontologies/DCAT3/1/dcat3.owl", "submission_id": 1, "domain": null, "description": "DCAT", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-05-23T00:00:00", "date_created": "2024-05-23T04:48:58", "home_page": null, "version": "3", "has_ontology_language": "OWL", "nb_classes": 54, "nb_individuals": 18, "nb_properties": 105, "max_depth": 4, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CRO", "name": "Contributor Role Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3171, "download_url": "media/ontologies/CRO/5/cro.owl", "submission_id": 5, "domain": "scholarly contribution roles", "description": "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "cro.owl", "title": "CRO", "ontology_purl": "http://purl.obolibrary.org/obo/cro.owl" } ], "taxon": null, "date_released": "2019-12-16T13:38:17.647395", "date_created": "2019-12-16T13:38:17.647429", "home_page": "https://github.com/data2health/contributor-role-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 124, "nb_individuals": 21, "nb_properties": 5, "max_depth": 7, "max_children": 32, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "0ee9b321e6f69fcf1428ec7ccda6ad65" } }, { "acronym": "CSEO", "name": "Cigarette Smoke Exposure Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 473, "download_url": "media/ontologies/CSEO/2/cseo.owl", "submission_id": 2, "domain": null, "description": "The CSEO has potential to become a widely used standard within the academic and industrial community. Mainly because of the emerging need of systems toxicology to controlled vocabularies and also the lack of suitable ontologies for this domain, the CSEO prepares the ground for integrative systems-based research in the exposure science.", "documentation": null, "publication": "http://www.jbiomedsem.com/content/5/1/31/abstract", "publications": null, "products": null, "taxon": null, "date_released": "2014-07-10T00:00:00", "date_created": "2014-07-10T18:38:44", "home_page": "https://publicwiki-01.fraunhofer.de/CSEO-Wiki/index.php/Main_Page", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 20085, "nb_individuals": 0, "nb_properties": 91, "max_depth": 21, "max_children": 413, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CIE-10", "name": "CIE-10", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CSO", "name": "Clinical Study Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 683, "download_url": "media/ontologies/CSO/1/cso.owl", "submission_id": 1, "domain": null, "description": "Ontology to describe general clinical studies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-09-23T00:00:00", "date_created": "2015-09-23T20:49:16", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 37, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 11, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CTGO", "name": "Clinical Trials Gov Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6677, "download_url": "media/ontologies/CTGO/1/ctgo.owl", "submission_id": 1, "domain": null, "description": "The Clinical Trials Gov Ontology (CTGO) is based on the AACT database schema for Aggregate Analysis of ClinicalTrials.gov. AACT contains information about clinical studies that have been registered at ClinicalTrials.gov. AACT includes all of the protocol and results data elements for studies publicly available at ClinicalTrials.gov.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-06-14T00:00:00", "date_created": "2024-06-14T04:26:21", "home_page": "http://mraas.ai/ontologies/ctgo.ttl", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 121, "nb_individuals": 0, "nb_properties": 84, "max_depth": 4, "max_children": 22, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CVDO", "name": "Cardiovascular Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6688, "download_url": "media/ontologies/CVDO/6/cvdo.owl", "submission_id": 6, "domain": "health", "description": "An ontology to describe entities related to cardiovascular diseases", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "cvdo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cvdo.owl" } ], "taxon": null, "date_released": "2024-06-24T12:21:55.473905", "date_created": "2024-06-24T12:21:55.473911", "home_page": "https://github.com/OpenLHS/CVDO", "version": null, "has_ontology_language": "OWL", "nb_classes": 720, "nb_individuals": 9, "nb_properties": 78, "max_depth": 17, "max_children": 23, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "a438ce85dee30bb849ccbae3b006ef9e" } }, { "acronym": "CELEGANH", "name": "NeuroMorpho.Org C. elegans regions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 486, "download_url": "media/ontologies/CELEGANH/2/celeganh.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of C. elegans cell and anatomy & Organs.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-05T00:00:00", "date_created": "2016-08-29T19:27:44", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 11, "nb_individuals": 6, "nb_properties": 0, "max_depth": 4, "max_children": 4, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CHD", "name": "Congenital Heart Defects Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 237, "download_url": "media/ontologies/CHD/5/chd.owl", "submission_id": 5, "domain": null, "description": "An ontology that describes the Congenital Heart Defects data.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-05-23T07:00:00", "date_created": "2013-06-03T09:53:00", "home_page": "http://homes.esat.kuleuven.be/~bioiuser/chdwiki", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 511, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 338, "avg_children": 30, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DSIP2324_DEMO", "name": "DSIP2324_Demonstration", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6121, "download_url": "media/ontologies/DSIP2324_DEMO/2/dsip2324_demo.skos", "submission_id": 2, "domain": null, "description": "This is an ontology made for the purposes of demonstrating the process of vocabulary creation for the Data Science in Practice course.\r\n\r\nUpdate V0.2: Fixed Leiden University coupling to DBpedia", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-11T00:00:00", "date_created": "2023-10-11T12:53:51", "home_page": null, "version": "0.2", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 15, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DSIP7", "name": "DSIP_FieldLab_7", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6172, "download_url": "media/ontologies/DSIP7/1/dsip7.owl", "submission_id": 1, "domain": null, "description": "The Human Trafficking Vocabulary is an essential resource for researchers and analysts working with raw interview data gathered from refugees affected by human trafficking. It offers a standardized framework for categorizing and understanding various aspects of human trafficking incidents. The vocabulary includes terms for describing the nationality and location of human traffickers, the number of times traffickers are mentioned by independent sources, the type of observation obtained (first-hand or second-hand), and more. This vocabulary was created as part of Data Science in Practice Fieldlab-7, with guidance from Kai Smiths. It is continuously updated to reflect new insights and developments in the field of human trafficking research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-02T00:00:00", "date_created": "2023-11-02T21:49:14", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 24, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "Test Ontology for Non-bio", "name": "Sudalai Mari", "status": "Classified", "topics": [ "Biological" ], "species": [ "Human" ], "submission": { "id": 6228, "download_url": "media/ontologies/Test Ontology for Non-bio/1/test ontology for non-bio.owl", "submission_id": 1, "domain": null, "description": "Test ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-04T10:53:14.534634", "date_created": "2023-12-04T10:53:14.534625", "home_page": null, "version": "v1", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 0, "nb_properties": 1, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DSIP8", "name": "DSIP8REFUGEE", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6168, "download_url": "media/ontologies/DSIP8/3/dsip8.skos", "submission_id": 3, "domain": null, "description": "refugee datapod updated ontology after feedback", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-28T00:00:00", "date_created": "2023-10-31T13:22:34", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 15, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "a", "name": "z", "status": "Unknown", "topics": [ "z" ], "species": [ "z" ], "submission": null }, { "acronym": "FISH ANAT", "name": "zebrafish anatomy", "status": "Classified", "topics": [], "species": [ "Danio rerio" ], "submission": { "id": 3985, "download_url": "media/ontologies/FISH ANAT/1/fish anat.obo", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-10-13T22:38:25.853350", "date_created": "2020-10-13T22:38:25.853331", "home_page": "http://purl.obolibrary.org/obo/zfa.obo", "version": "1", "has_ontology_language": "OBO", "nb_classes": 3219, "nb_individuals": 0, "nb_properties": 8, "max_depth": 11, "max_children": 233, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DSIPF7", "name": "DSIP FiledLab7 ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6177, "download_url": "media/ontologies/DSIPF7/3/dsipf7.owl", "submission_id": 3, "domain": null, "description": "The Human Trafficking Vocabulary is an essential resource for researchers and analysts working with raw interview data gathered from refugees affected by human trafficking. It offers a standardized framework for categorizing and understanding various aspects of human trafficking incidents. The vocabulary includes terms for describing the nationality and location of human traffickers, the number of times traffickers are mentioned by independent sources, the type of observation obtained (first-hand or second-hand), and more.\r\n\r\nThis vocabulary was created as part of Data Science in Practice Fieldlab-7, with guidance from Kai Smiths. It is continuously updated to reflect new insights and developments in the field of human trafficking research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-31T00:00:00", "date_created": "2023-11-02T21:01:25", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 24, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DUO", "name": "Data Use Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4303, "download_url": "media/ontologies/DUO/9/duo.owl", "submission_id": 9, "domain": null, "description": "DUO is an ontology which represent data use conditions.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "duo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/duo.owl" } ], "taxon": null, "date_released": "2021-03-01T13:17:10.013258", "date_created": "2021-03-01T13:17:10.013270", "home_page": "https://github.com/EBISPOT/DUO", "version": null, "has_ontology_language": "OWL", "nb_classes": 300, "nb_individuals": 22, "nb_properties": 51, "max_depth": 11, "max_children": 39, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "b150506aa3a0fece85eef888f09c0388" } }, { "acronym": "EBP", "name": "EmpowerBP", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1582, "download_url": "media/ontologies/EBP/2/ebp.owl", "submission_id": 2, "domain": null, "description": "Clinical practice guidelines, behaviour change theories, and associated behaviour change strategies for the management of hypertension.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-02-21T00:00:00", "date_created": "2018-06-15T15:25:53", "home_page": null, "version": "2.5", "has_ontology_language": "OWL", "nb_classes": 50, "nb_individuals": 321, "nb_properties": 26, "max_depth": 3, "max_children": 16, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECDO", "name": "Elderly Care Dementia Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6265, "download_url": "media/ontologies/ECDO/1/ecdo.skos", "submission_id": 1, "domain": null, "description": "This is an ontology for elderly dementia care in the Netherlands.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-18T00:00:00", "date_created": "2023-12-18T14:45:00", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 54, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SOPHARM", "name": "Suggested Ontology for Pharmacogenomics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 692, "download_url": "media/ontologies/SOPHARM/18/sopharm.owl", "submission_id": 18, "domain": null, "description": "SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.", "documentation": "https://members.loria.fr/ACoulet/files/ontology/sopharm/version2.0/foundry_requirements.php", "publication": "http://hal.inria.fr/inria-00089824/en/", "publications": null, "products": null, "taxon": null, "date_released": "2017-03-02T00:00:00", "date_created": "2017-03-02T16:12:57", "home_page": "https://members.loria.fr/ACoulet/files/sopharm2.0_description.php", "version": "The new release (March 02, 2017) 2.2 includes concept and properties labels in French.\nImports have been abandoned in favor of simple references to distant URI", "has_ontology_language": "OWL", "nb_classes": 117, "nb_individuals": 17, "nb_properties": 61, "max_depth": 4, "max_children": 51, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SSO", "name": "Syndromic Surveillance Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 564, "download_url": "media/ontologies/SSO/1/sso.owl", "submission_id": 1, "domain": null, "description": "The SSO encodes agreement among experts about how Emergency Department (ED) chief complaints are grouped into syndromes of public health importance (consensus definitions). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-09-18T07:00:00", "date_created": "2009-09-19T03:17:07", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 176, "nb_individuals": 158, "nb_properties": 32, "max_depth": 2, "max_children": 88, "avg_children": 25, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIRNLEX", "name": "Biomedical Informatics Research Network Project Lexicon", "status": "Classified", "topics": null, "species": null, "submission": { "id": 34, "download_url": "media/ontologies/BIRNLEX/1/birnlex.owl", "submission_id": 1, "domain": null, "description": "The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2007-08-08T07:00:00", "date_created": "2008-03-25T00:39:39", "home_page": "http://xwiki.nbirn.net:8080/xwiki/bin/view/%20BIRN-OTF-Public/Home", "version": "1.3.1", "has_ontology_language": "OWL", "nb_classes": 3580, "nb_individuals": 0, "nb_properties": 9, "max_depth": 40, "max_children": 66, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIRTHONTO", "name": "BirthOnto: Birth Data Analysis", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5750, "download_url": "media/ontologies/BIRTHONTO/1/birthonto.owl", "submission_id": 1, "domain": null, "description": "US Birth ontology is a formal representation of the concepts, properties, and relationships that are relevant to the domain of US birth data\r\n\r\nCompetency questions are:\r\n1. What is the total number of live births in the United States for a given year?\r\n\r\n2. What is the distribution of birth weight for babies born to mothers of different ages?\r\n\r\n3. What is the prevalence of preterm births among babies born to mothers who smoke during pregnancy?\r\n\r\n4. What is the relationship between maternal age and the likelihood of having a multiple birth?\r\n\r\n5. What is the difference in birth outcomes between mothers who receive prenatal care and those who do not?\r\n\r\n6. What is the trend in the rate of low birth weight babies over time?\r\n\r\n7. What is the impact of socioeconomic status on birth outcomes, such as birth weight and gestational age?\r\n\r\n8. What is the relationship between the mother's race and ethnicity and the likelihood of having a preterm birth?\r\n\r\n9. What are the common risk factors for adverse birth outcomes, and how do they interact with each other?\r\n\r\nUS Birth ontology can be used to facilitate data integration, analysis, and sharing across different data sources and systems. It can help to ensure that data is consistent, interoperable, and reusable, and can facilitate data discovery and reuse. The ontology can be used by researchers, healthcare professionals, and policymakers to ask and answer questions about birth outcomes, risk factors, and trends in the US birth data.", "documentation": "https://koolgax99.github.io/abhilash-US-birth-onto/index-en.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-03-28T00:00:00", "date_created": "2023-03-29T05:22:54", "home_page": "https://koolgax99.github.io/abhilash-US-birth-onto/index-en.html", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 87, "nb_individuals": 590, "nb_properties": 71, "max_depth": 3, "max_children": 16, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CHMO", "name": "Chemical Methods Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7681, "download_url": "media/ontologies/CHMO/34/chmo.owl", "submission_id": 34, "domain": "health", "description": "CHMO, the chemical methods ontology, describes methods used to", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "chmo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/chmo.owl" } ], "taxon": null, "date_released": "2025-10-27T12:01:48.004348", "date_created": "2025-10-27T12:01:48.004353", "home_page": "https://github.com/rsc-ontologies/rsc-cmo", "version": null, "has_ontology_language": "OWL", "nb_classes": 3235, "nb_individuals": 131, "nb_properties": 60, "max_depth": 14, "max_children": 70, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d6821ed76d8c3a23dfa173689ed46a52" } }, { "acronym": "CIDO", "name": "Coronavirus Infectious Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6407, "download_url": "media/ontologies/CIDO/35/cido.owl", "submission_id": 35, "domain": "health", "description": "The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/36271389", "title": "A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology" } ], "products": [ { "id": "cido.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cido.owl" } ], "taxon": null, "date_released": "2024-02-19T12:18:56.012988", "date_created": "2024-02-19T12:18:56.012991", "home_page": "https://github.com/cido-ontology/cido", "version": null, "has_ontology_language": "OWL", "nb_classes": 31924, "nb_individuals": 461, "nb_properties": 381, "max_depth": 38, "max_children": 5749, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "5d7a3e23e9d660967b8699808d8eb173" } }, { "acronym": "CL", "name": "Cell Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8065, "download_url": "media/ontologies/CL/120/cl.owl", "submission_id": 120, "domain": "anatomy and development", "description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/27377652", "title": "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability." } ], "products": [ { "id": "cl.owl", "uses": [ "go", "ncbitaxon", "omo", "pato", "pr", "ro", "uberon" ], "title": "Main CL OWL edition", "format": "owl-rdf/xml", "description": "Complete ontology, plus inter-ontology axioms, and imports modules", "is_canonical": true, "ontology_purl": "http://purl.obolibrary.org/obo/cl.owl" }, { "id": "cl.obo", "title": "CL obo format edition", "format": "obo", "description": "Complete ontology, plus inter-ontology axioms, and imports modules merged in", "derived_from": "cl.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cl.obo" }, { "id": "cl.json", "title": "CL OBOGraph-JSON format edition", "format": "json", "description": "Complete ontology, plus inter-ontology axioms, and imports modules merged in", "derived_from": "cl.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cl.json" }, { "id": "cl/cl-basic.owl", "title": "Basic CL", "format": "owl-rdf/xml", "description": "Basic version, no inter-ontology axioms", "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.owl" }, { "id": "cl/cl-basic.obo", "title": "Basic CL (OBO version)", "format": "obo", "description": "Basic version, no inter-ontology axioms", "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.obo" }, { "id": "cl/cl-basic.json", "title": "Basic CL (OBOGraph-JSON version)", "format": "json", "description": "Basic version, no inter-ontology axioms", "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.json" }, { "id": "cl/cl-base.owl", "title": "CL base module", "format": "owl-rdf/xml", "description": "complete CL but with no imports or external axioms", "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.owl" }, { "id": "cl/cl-base.obo", "title": "CL base module (OBO version)", "format": "obo", "description": "complete CL but with no imports or external axioms", "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.obo" }, { "id": "cl/cl-base.json", "title": "CL base module (OBOGraph-JSON version)", "format": "json", "description": "complete CL but with no imports or external axioms", "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.json" } ], "taxon": { "id": "NCBITaxon:33208", "label": "Metazoa" }, "date_released": "2026-03-30T12:02:02.251203", "date_created": "2026-03-30T12:02:02.251206", "home_page": "https://obophenotype.github.io/cell-ontology/", "version": null, "has_ontology_language": "OWL", "nb_classes": 19151, "nb_individuals": 214, "nb_properties": 268, "max_depth": 33, "max_children": 666, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "e5867901eef2711ab360dce3d66b44b3" } }, { "acronym": "CLAO", "name": "Collembola Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4513, "download_url": "media/ontologies/CLAO/2/clao.owl", "submission_id": 2, "domain": "anatomy", "description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "clao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/clao.owl" }, { "id": "clao.obo", "ontology_purl": "http://purl.obolibrary.org/obo/clao.obo" } ], "taxon": null, "date_released": "2021-10-25T13:30:39.044139", "date_created": "2021-10-25T13:30:39.044156", "home_page": "https://github.com/luis-gonzalez-m/Collembola", "version": null, "has_ontology_language": "OWL", "nb_classes": 1516, "nb_individuals": 0, "nb_properties": 26, "max_depth": 14, "max_children": 340, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "99c04b1e9d00640957ebcd96bb020c23" } }, { "acronym": "CLO", "name": "Cell Line Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6695, "download_url": "media/ontologies/CLO/7/clo.owl", "submission_id": 7, "domain": "anatomy and development", "description": "An ontology to standardize and integrate cell line information and to support computer-assisted reasoning.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/25852852", "title": "CLO: The Cell Line Ontology" } ], "products": [ { "id": "clo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/clo.owl" } ], "taxon": null, "date_released": "2024-07-01T12:51:51.714232", "date_created": "2024-07-01T12:51:51.714236", "home_page": "https://github.com/CLO-Ontology/CLO", "version": null, "has_ontology_language": "OWL", "nb_classes": 43327, "nb_individuals": 26, "nb_properties": 249, "max_depth": 36, "max_children": 21698, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "428ce2f42b5cd63c9a121d35f5dcdcaa" } }, { "acronym": "CLYH", "name": "Clytia hemisphaerica Development and Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3642, "download_url": "media/ontologies/CLYH/3/clyh.owl", "submission_id": 3, "domain": "anatomy", "description": "The Clytia hemisphaerica Development and Anatomy Ontology (CLYH) describes the anatomical and developmental features of the Clytia hemisphaerica life cycle.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "clyh.owl", "ontology_purl": "http://purl.obolibrary.org/obo/clyh.owl" }, { "id": "clyh.obo", "ontology_purl": "http://purl.obolibrary.org/obo/clyh.obo" } ], "taxon": null, "date_released": "2020-06-01T14:09:54.824025", "date_created": "2020-06-01T14:09:54.824035", "home_page": "https://github.com/EBISPOT/clyh_ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 265, "nb_individuals": 0, "nb_properties": 5, "max_depth": 5, "max_children": 76, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "3f6dcba5ce39635cb45cc5fbfaee3c91" } }, { "acronym": "CMDO", "name": "Clinical MetaData Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2743, "download_url": "media/ontologies/CMDO/10/cmdo.owl", "submission_id": 10, "domain": null, "description": "The Clinical MetaData Ontology is designed to be used to classify Common Data Elements (CDEs) from different studies and clinical documents. CDEs can be efficiently searched, shared and reused by using our ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-02-26T00:00:00", "date_created": "2019-07-12T09:44:05", "home_page": "http://www.snubi.org/software/cmo/", "version": "1.1.4", "has_ontology_language": "OWL", "nb_classes": 188, "nb_individuals": 151, "nb_properties": 3, "max_depth": 7, "max_children": 20, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OMIT", "name": "Ontology for MIRNA Target", "status": "Incoherent", "topics": null, "species": null, "submission": { "id": 1045, "download_url": "media/ontologies/OMIT/41/omit.owl", "submission_id": 41, "domain": null, "description": "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "omit.owl", "ontology_purl": "http://purl.obolibrary.org/obo/omit.owl" } ], "taxon": null, "date_released": "2017-12-13T10:42:10.368073", "date_created": "2017-12-13T10:42:10.368096", "home_page": "http://omit.cis.usouthal.edu/", "version": null, "has_ontology_language": "OWL", "nb_classes": 90894, "nb_individuals": 18, "nb_properties": 44, "max_depth": 18, "max_children": 59874, "avg_children": 2225, "classifiable": true, "nb_inconsistent": 2493, "indexed": true, "md5sum": "61894914b3b84db9ace969d26854349c" } }, { "acronym": "CMO", "name": "Clinical measurement ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8100, "download_url": "media/ontologies/CMO/177/cmo.owl", "submission_id": 177, "domain": "health", "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22654893", "title": "Three ontologies to define phenotype measurement data." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24103152", "title": "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications." } ], "products": [ { "id": "cmo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cmo.owl" }, { "id": "cmo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/cmo.obo" } ], "taxon": null, "date_released": "2026-04-13T12:03:19.843774", "date_created": "2026-04-13T12:03:19.843786", "home_page": "http://rgd.mcw.edu/rgdweb/ontology/search.html", "version": null, "has_ontology_language": "OWL", "nb_classes": 4137, "nb_individuals": 0, "nb_properties": 2, "max_depth": 11, "max_children": 126, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "80891206473374996bd764f851487b01" } }, { "acronym": "CMPO", "name": "Cellular microscopy phenotype ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 484, "download_url": "media/ontologies/CMPO/14/cmpo.owl", "submission_id": 14, "domain": null, "description": "The Cellular Microscopy Phenotype Ontology (CMPO) is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. CMPO is an application ontology developed in OWL that contains precomposed phenotypes descriptions that are defined using the Gene Ontology (GO) and the Phenotype Trait Ontology (PATO).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-25T01:01:45", "date_created": "2015-06-25T01:01:45", "home_page": "https://github.com/EBISPOT/CMPO", "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 813, "nb_individuals": 0, "nb_properties": 30, "max_depth": 12, "max_children": 67, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "cmt", "name": "cmt", "status": "Classified", "topics": [ "cmt" ], "species": [ "cmt" ], "submission": { "id": 3036, "download_url": "media/ontologies/cmt/1/cmt.owl", "submission_id": 1, "domain": null, "description": "OAEI Conference 2019", "documentation": "Yes", "publication": "Yes", "publications": null, "products": null, "taxon": null, "date_released": "2019-10-28T14:29:05.297273", "date_created": "2019-10-28T14:29:05.297261", "home_page": "https://gite.lirmm.fr/opendata/yampp-online/raw/4606498a7c3aa8f3704898a4cc3f513c7a79ba2f/cmt.owl", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 30, "nb_individuals": 0, "nb_properties": 49, "max_depth": 4, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CN", "name": "computer network", "status": "Classified", "topics": null, "species": null, "submission": { "id": 540, "download_url": "media/ontologies/CN/1/cn.owl", "submission_id": 1, "domain": null, "description": "Computer networks ontology ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-09-18T00:00:00", "date_created": "2014-09-25T12:09:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 537, "nb_individuals": 2, "nb_properties": 38, "max_depth": 8, "max_children": 34, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COB", "name": "Core Ontology for Biology and Biomedicine", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7803, "download_url": "media/ontologies/COB/16/cob.owl", "submission_id": 16, "domain": "upper", "description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "cob.owl", "title": "COB", "description": "Core Ontology for Biology and Biomedicine, main ontology", "ontology_purl": "http://purl.obolibrary.org/obo/cob.owl" }, { "id": "cob/cob-base.owl", "title": "COB base module", "description": "base module for COB", "ontology_purl": "http://purl.obolibrary.org/obo/cob/cob-base.owl" }, { "id": "cob/cob-native.owl", "title": "COB native module", "description": "COB with native IDs preserved rather than rewired to OBO IDs", "ontology_purl": "http://purl.obolibrary.org/obo/cob/cob-native.owl" }, { "id": "cob/cob-to-external.owl", "type": "BridgeOntology", "title": "COB to external", "ontology_purl": "http://purl.obolibrary.org/obo/cob/cob-to-external.owl" }, { "id": "cob/products/demo-cob.owl", "title": "COB demo ontology (experimental)", "status": "alpha", "description": "demo of COB including subsets of other ontologies (Experimental, for demo purposes only)", "ontology_purl": "http://purl.obolibrary.org/obo/cob/products/demo-cob.owl" } ], "taxon": null, "date_released": "2025-12-15T12:05:56.981159", "date_created": "2025-12-15T12:05:56.981165", "home_page": "https://obofoundry.org/COB/", "version": null, "has_ontology_language": "OWL", "nb_classes": 68, "nb_individuals": 0, "nb_properties": 27, "max_depth": 4, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "a3928d222ca31980ff6fb692ea9c22df" } }, { "acronym": "COGAT", "name": "Cognitive Atlas Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 79, "download_url": "media/ontologies/COGAT/7/cogat.owl", "submission_id": 7, "domain": null, "description": "The Cognitive Atlas is a collaborative knowledge building project that aims to develop an ontology that characterizes the state of current thought in cognitive science. It defines a set of mental concepts along with a set of mental tasks, and the measurement relations between those classes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-04-03T07:00:00", "date_created": "2016-08-15T22:55:22", "home_page": "http://www.cognitiveatlas.org", "version": "0.3.1", "has_ontology_language": "OWL", "nb_classes": 3639, "nb_individuals": 0, "nb_properties": 6, "max_depth": 7, "max_children": null, "avg_children": null, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EDDA", "name": "EDDA Study Designs Taxonomy", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 57, "download_url": "media/ontologies/EDDA/11/edda.owl", "submission_id": 11, "domain": null, "description": "The EDDA Study Designs Taxonomy (v2.0) was developed by the Evidence in Documents, Discovery, and Analytics (EDDA) Group: Tanja Bekhuis (Principal Scientist); Eugene Tseytlin (Systems Developer); Ashleigh Faith (Taxonomist); Faina Linkov (Epidemiologist). The EDDA Group is a division of TCB Research & Indexing LLC. This work was made possible, in part, by the US National Library of Medicine, National Institutes of Health, grant no. R00LM010943. \r\n\r\nFoundational research is described in Bekhuis T, Demner Fushman D, Crowley RS. Comparative effectiveness research designs: an analysis of terms and coverage in Medical Subject Headings (MeSH) and Emtree. Journal of the Medical Library Association (JMLA). 2013 April;101(2):92-100. PMC3634392. \r\n\r\nCoverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries.\r\n\r\nA PDF of this taxonomy is available in ResearchGate DOI: 10.13140/RG.2.1.3769.2406/1.\r\n\r\nThe EDDA Study Designs Taxonomy by Tanja Bekhuis and Eugene Tseytlin is licensed under a Creative Commons Attribution–NonCommercial–ShareAlike 4.0 International License (CC BY-NC-SA 4.0). For information about this license, see https://creativecommons.org/licenses/by-nc-sa/4.0/.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-07-16T00:00:00", "date_created": "2016-07-16T15:20:06", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 502, "nb_individuals": 0, "nb_properties": 4, "max_depth": 5, "max_children": 93, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "D1245", "name": "Data Center", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "DILON", "name": "Dietary lifestyle ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4955, "download_url": "media/ontologies/DILON/2/dilon.owl", "submission_id": 2, "domain": null, "description": "DILON was created to represent dietary lifestyle data. Concepts were pulled from Korean dietary assessment scales and English assessment scales. Concepts are labeled in English and Korean translations are also provided.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-11-02T00:00:00", "date_created": "2022-03-11T13:25:18", "home_page": null, "version": "2", "has_ontology_language": "OWL", "nb_classes": 262, "nb_individuals": 513, "nb_properties": 7, "max_depth": 6, "max_children": 13, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EDDA_PT", "name": "EDDA Publication Types Taxonomy", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 243, "download_url": "media/ontologies/EDDA_PT/1/edda_pt.owl", "submission_id": 1, "domain": null, "description": "The EDDA Publication Types Taxonomy (v1.0) was developed by Tanja Bekhuis (Principal Scientist) and Eugene Tseytlin (Systems Developer) of the Evidence in Documents, Discovery, and Analytics (EDDA) Group. The EDDA Group is a division of TCB Research & Indexing LLC. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCIT, Emtree, and dictionaries. \r\n\r\nThe EDDA Publication Types Taxonomy by Tanja Bekhuis and Eugene Tseytlin is licensed under a Creative Commons Attribution–NonCommercial–ShareAlike 4.0 International License (CC BY-NC-SA 4.0). For information about this license, see https://creativecommons.org/licenses/by-nc-sa/4.0/.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-07-18T00:00:00", "date_created": "2016-07-18T21:01:38", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 93, "nb_individuals": 0, "nb_properties": 4, "max_depth": 4, "max_children": 31, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DLORO", "name": "Dependency Layered Ontology for Radiation Oncology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 725, "download_url": "media/ontologies/DLORO/1/dloro.owl", "submission_id": 1, "domain": null, "description": "Dependency Layered Ontology for Radiation Oncology", "documentation": "https://ont2bn.radonc.washington.edu/amkalet-apps/Ont2BNapp/uwthesisAKalet.pdf#page=56", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-12-28T00:00:00", "date_created": "2015-12-28T18:59:23", "home_page": "https://ont2bn.radonc.washington.edu/IROK/", "version": null, "has_ontology_language": "OWL", "nb_classes": 273, "nb_individuals": 0, "nb_properties": 5, "max_depth": 4, "max_children": 35, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DOVES", "name": "Digital medicine Outcomes Value Set (DOVeS) Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6267, "download_url": "media/ontologies/DOVES/2/doves.owl", "submission_id": 2, "domain": null, "description": "The Digital medicine Outcomes Value Set (DOVeS) ontology aims to provide users with a set of ontologically structured healthcare outcomes (clinical, operational, economic, technical, and others) tailored to digital medicine and digital therapeutic applications.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-13T00:00:00", "date_created": "2023-12-13T21:53:58", "home_page": null, "version": "releases/2023-03-01", "has_ontology_language": "OWL", "nb_classes": 27531, "nb_individuals": 1, "nb_properties": 32, "max_depth": 13, "max_children": 1579, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DRPSNPTO", "name": "Dementia-Related Psychotic Symptoms Non-Pharmacological Treatment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4329, "download_url": "media/ontologies/DRPSNPTO/1/drpsnpto.owl", "submission_id": 1, "domain": null, "description": "The DRPSNPTO ontology represents the domain knowledge specific to non-pharmacological treatment of psychotic symptoms in dementia in the long-term care setting.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-03-08T00:00:00", "date_created": "2021-03-08T23:41:27", "home_page": null, "version": "v1.0", "has_ontology_language": "OWL", "nb_classes": 610, "nb_individuals": 0, "nb_properties": 60, "max_depth": 8, "max_children": 26, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DSIP1V", "name": "DSIP1_vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6162, "download_url": "media/ontologies/DSIP1V/2/dsip1v.skos", "submission_id": 2, "domain": null, "description": "This is vocabularies for the DSIP Group 1 FieldLabs", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-29T00:00:00", "date_created": "2023-11-01T20:49:00", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 9, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HMSG", "name": "Hack Mudah Slot Games", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "AD-DROP", "name": "Alzheimer Disease Relevance Ontology by Process", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4075, "download_url": "media/ontologies/AD-DROP/1/ad-drop.owl", "submission_id": 1, "domain": null, "description": "Alzheimer Disease Relevance Ontology by Process (AD-DROP) aimed at classifying Disease Relevant Process according to their specificity, frequency and pathogenic intensity properties toward AD", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-11-18T00:00:00", "date_created": "2020-11-18T16:26:38", "home_page": null, "version": "alpha", "has_ontology_language": "OWL", "nb_classes": 25, "nb_individuals": 63, "nb_properties": 1, "max_depth": 3, "max_children": 7, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ADMO", "name": "Alzheimer Disease Map Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3579, "download_url": "media/ontologies/ADMO/4/admo.owl", "submission_id": 4, "domain": null, "description": "Alzheimer’s disease (AD) pathophysiology is still imperfectly understood and current paradigms have not led to curative outcome. Omics technologies offer great promises for improving our understanding and generating new hypotheses. However, integration and interpretation of such data pose major challenges, calling for adequate knowledge models. AlzPathway is a disease map that gives a detailed and broad account of AD pathophysiology. However, AlzPathway lacks formalism, which can lead to ambiguity and misinterpretation. Ontologies are an adequate framework to overcome this limitation, through their axiomatic definitions and logical reasoning prop-erties. We introduce the AD Map Ontology (ADMO), an ontological upper model based on systems biology terms. We then propose to convert AlzPathway into an ontology and to integrate it into ADMO.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-10-17T00:00:00", "date_created": "2020-04-21T16:35:33", "home_page": null, "version": "beta", "has_ontology_language": "OWL", "nb_classes": 10943, "nb_individuals": 0, "nb_properties": 19, "max_depth": 10, "max_children": 7537, "avg_children": 76, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CL-SIMPLE", "name": "Cell Ontology Simple", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8075, "download_url": "media/ontologies/CL-SIMPLE/27/cl-simple.owl", "submission_id": 27, "domain": null, "description": "Cell Ontology treated as a simple existential graph of the terms defined in an ontology, An ontology of cell types.", "documentation": null, "publication": "['https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0088-7']", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-27T01:02:11", "date_created": "2026-03-26T00:00:00", "home_page": "https://cell-ontology.github.io/", "version": "2026-03-26", "has_ontology_language": "OWL", "nb_classes": 3605, "nb_individuals": 0, "nb_properties": 52, "max_depth": 13, "max_children": 292, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COLAO", "name": "Coleoptera Anatomy Ontology (COLAO)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6687, "download_url": "media/ontologies/COLAO/10/colao.owl", "submission_id": 10, "domain": "anatomy and development", "description": "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research. It has been built using the Ontology Develoment Kit, with the Ontology for the Anatomy of the Insect Skeleto-Muscular system (AISM) as a backbone.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "colao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/colao.owl" }, { "id": "colao.obo", "ontology_purl": "http://purl.obolibrary.org/obo/colao.obo" } ], "taxon": null, "date_released": "2024-06-24T12:21:29.836028", "date_created": "2024-06-24T12:21:29.836031", "home_page": "https://github.com/insect-morphology/colao", "version": null, "has_ontology_language": "OWL", "nb_classes": 894, "nb_individuals": 0, "nb_properties": 32, "max_depth": 7, "max_children": 96, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "1d27f6034af73110a43eb5bedd2c7f42" } }, { "acronym": "COLL", "name": "Collembola Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3386, "download_url": "media/ontologies/COLL/7/coll.owl", "submission_id": 7, "domain": null, "description": "An anatomical ontology for Collembola (Arthropoda: Hexapoda). This ontology is developed for morphological descriptions in Collembola and is part of doctoral research \"Taxonomical revision of neotropical species belongs to genus Lepidocyrtus (Entombryidae: Lepidocyrtinae)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-02-01T00:00:00", "date_created": "2020-02-25T23:20:00", "home_page": null, "version": "2020-25-02", "has_ontology_language": "OWL", "nb_classes": 1265, "nb_individuals": 0, "nb_properties": 14, "max_depth": 11, "max_children": 345, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EVORAO", "name": "European Viral Outbreak Response Alliance Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7987, "download_url": "media/ontologies/EVORAO/23/evorao.owl", "submission_id": 23, "domain": null, "description": "EVORAO is an ontology for standardized metadata supporting the sharing of pathogens as biological materials, their derived products, and associated services, organized into collections. While initially focused on virology, it is designed for interoperability and is extensible to other pathogens. EVORAO is compatible with DCAT, making it well-suited for efficiently cataloguing pathogen collections and related resources.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-19T02:08:02", "date_created": "2026-02-18T00:00:00", "home_page": "https://w3id.org/evorao", "version": "1.1.44", "has_ontology_language": "OWL", "nb_classes": 80, "nb_individuals": 289, "nb_properties": 69, "max_depth": 6, "max_children": 23, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SERVICE", "name": "Rafter Loft Conversions Ltd", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "RGD", "name": "RRB Group D", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "FL8DSIP", "name": "Fieldlab 8 - Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7775, "download_url": "media/ontologies/FL8DSIP/2/fl8dsip.owl", "submission_id": 2, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-01T00:00:00", "date_created": "2025-12-01T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 26, "nb_individuals": 29, "nb_properties": 9, "max_depth": 2, "max_children": 21, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EVS", "name": "Exposure Value Set", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7426, "download_url": "media/ontologies/EVS/6/evs.skos", "submission_id": 6, "domain": null, "description": "A collection of curated and standardized values used in metadata specifications produced by ADAMS (Accelerating DAta and Metadata Standards \u000bin the Environmental Health Sciences Study of Emerging Water Contaminants) group. These values are designed to ensure uniformity in the description of the various metadata standards produced by the group. ", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-06-20T00:00:00", "date_created": "2025-06-20T00:00:00", "home_page": null, "version": "0.0.6", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 72, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EXMO", "name": "Exercise Medicine Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7804, "download_url": "media/ontologies/EXMO/7/exmo.owl", "submission_id": 7, "domain": "health", "description": "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/39695140", "title": "Core reference ontology for individualized exercise prescription" } ], "products": [ { "id": "exmo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/exmo.owl" } ], "taxon": null, "date_released": "2025-12-15T12:09:45.588119", "date_created": "2025-12-15T12:09:45.588122", "home_page": "https://github.com/Exercise-Medicine-Ontology/EXMO", "version": null, "has_ontology_language": "OWL", "nb_classes": 449, "nb_individuals": 35, "nb_properties": 658, "max_depth": 10, "max_children": 40, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "4d2171e26de2101a2a47f10debef4b81" } }, { "acronym": "EXO", "name": "Exposure ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7564, "download_url": "media/ontologies/EXO/16/exo.owl", "submission_id": 16, "domain": "health", "description": "Vocabularies for describing exposure data to inform understanding of environmental health.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "exo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/exo.owl" }, { "id": "exo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/exo.obo" } ], "taxon": null, "date_released": "2025-09-01T12:09:56.665975", "date_created": "2025-09-01T12:09:56.665977", "home_page": "https://github.com/CTDbase/exposure-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 168, "nb_individuals": 0, "nb_properties": 8, "max_depth": 7, "max_children": 27, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "37a46b8954c8777b43d47e13a30a99c2" } }, { "acronym": "EXON", "name": "Experimental Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 949, "download_url": "media/ontologies/EXON/1/exon.owl", "submission_id": 1, "domain": null, "description": "Experiment focused in the compatibility with proteg'e software to create and upload ontologies on Bioportal", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-30T00:00:00", "date_created": "2017-11-30T18:57:08", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 5, "nb_properties": 0, "max_depth": 3, "max_children": 3, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GAZ", "name": "Gazetteer", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7881, "download_url": "media/ontologies/GAZ/15/gaz.owl", "submission_id": 15, "domain": "environment", "description": "A gazetteer constructed on ontological principles. The countries are actively maintained.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "gaz.owl", "ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl" }, { "id": "gaz.obo", "ontology_purl": "http://purl.obolibrary.org/obo/gaz.obo" }, { "id": "gaz/gaz-countries.owl", "title": "GAZ countries", "description": "A country specific subset of the GAZ.", "ontology_purl": "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl" } ], "taxon": null, "date_released": "2026-01-19T17:46:58.313557", "date_created": "2026-01-19T17:46:58.313560", "home_page": "http://environmentontology.github.io/gaz/", "version": null, "has_ontology_language": "OWL", "nb_classes": 668839, "nb_individuals": 660755, "nb_properties": 15, "max_depth": 5, "max_children": 658769, "avg_children": 1005, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "0a36945e59eb74edf694591ebceafaee" } }, { "acronym": "SST", "name": "SATUSEHAT Thesis", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7096, "download_url": "media/ontologies/SST/3/sst.owl", "submission_id": 3, "domain": null, "description": "This is only a draft version", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-12-31T00:00:00", "date_created": "2025-01-06T21:32:57", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 17, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 17, "avg_children": 17, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "T123", "name": "Test123", "status": "Classified", "topics": [], "species": [], "submission": { "id": 5648, "download_url": "media/ontologies/T123/1/t123.skos", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-02-08T09:41:23.498777", "date_created": "2023-02-08T09:41:23.498758", "home_page": null, "version": "0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 9, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "Test Ontology for Non-biological", "name": "Sudalai Mari Test", "status": "Classified", "topics": [ "BiologicalTest" ], "species": [ "HumanTest" ], "submission": { "id": 6229, "download_url": "media/ontologies/Test Ontology for Non-biological/1/test ontology for non-biological.owl", "submission_id": 1, "domain": null, "description": "Test", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-04T11:16:24.706545", "date_created": "2023-12-04T11:16:24.706513", "home_page": null, "version": "V1", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 0, "nb_properties": 1, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COMODI", "name": "COMODI", "status": "Classified", "topics": null, "species": null, "submission": { "id": 645, "download_url": "media/ontologies/COMODI/6/comodi.owl", "submission_id": 6, "domain": null, "description": "An ontology to characterise differences in versions of computational models in biology", "documentation": "http://comodi.sems.uni-rostock.de", "publication": "http://comodi.sems.uni-rostock.de", "publications": null, "products": null, "taxon": null, "date_released": "2017-05-01T00:00:00", "date_created": "2017-05-01T19:13:49", "home_page": "http://comodi.sems.uni-rostock.de", "version": null, "has_ontology_language": "OWL", "nb_classes": 65, "nb_individuals": 0, "nb_properties": 7, "max_depth": 5, "max_children": 6, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECAO", "name": "The Echinoderm Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7342, "download_url": "media/ontologies/ECAO/5/ecao.owl", "submission_id": 5, "domain": "anatomy and development", "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ecao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ecao.owl" }, { "id": "ecao.obo", "ontology_purl": "http://purl.obolibrary.org/obo/ecao.obo" } ], "taxon": null, "date_released": "2025-05-19T12:07:04.871455", "date_created": "2025-05-19T12:07:04.871459", "home_page": "https://github.com/echinoderm-ontology/ecao_ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 7310, "nb_individuals": 67, "nb_properties": 281, "max_depth": 35, "max_children": 168, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d6c649a38409bcea6b75f0b181653cf5" } }, { "acronym": "ECG", "name": "Electrocardiography Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 755, "download_url": "media/ontologies/ECG/12/ecg.owl", "submission_id": 12, "domain": null, "description": "The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-09-09T07:00:00", "date_created": "2014-09-12T14:50:59", "home_page": "http://www.cvrgrid.org", "version": "1", "has_ontology_language": "OWL", "nb_classes": 1124, "nb_individuals": 0, "nb_properties": 72, "max_depth": 11, "max_children": 109, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECOSIM", "name": "ecosim ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7378, "download_url": "media/ontologies/ECOSIM/4/ecosim.owl", "submission_id": 4, "domain": null, "description": "An ontology of variables for earth system simulation, derived from the ecosim framework.", "documentation": "https://github.com/cmungall/ecosim-ontology", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-05-30T01:02:41", "date_created": "2025-05-30T01:02:42", "home_page": null, "version": "2025-05-29", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TODZ", "name": "Test Ontology", "status": "Unknown", "topics": [ "This is only an ontology for test :)" ], "species": [ "universal" ], "submission": null }, { "acronym": "EDAM", "name": "EDAM bioinformatics operations, types of data, data formats, identifiers, and topics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 346, "download_url": "media/ontologies/EDAM/36/edam.owl", "submission_id": 36, "domain": null, "description": "EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within bioinformatics and computational biology, including types of data and data identifiers, data formats, operations and topics. EDAM is a simply-structured ontology - essentially a set of concepts with preferred terms and synonyms, definitions, and some additional information - organised into a simple and intuitive hierarchy for convenient use by information curators, software developers and end-users. EDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries.", "documentation": "https://edamontologydocs.readthedocs.io", "publication": "http://doi.org/10.1093/bioinformatics/btt113", "publications": null, "products": null, "taxon": null, "date_released": "2017-10-31T00:00:00", "date_created": "2017-10-31T01:49:28", "home_page": "http://edamontology.org", "version": "1.19", "has_ontology_language": "OWL", "nb_classes": 3294, "nb_individuals": 0, "nb_properties": 12, "max_depth": 8, "max_children": 1074, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EDAM2", "name": "EDAM2", "status": "Classified", "topics": [], "species": [], "submission": { "id": 2727, "download_url": "media/ontologies/EDAM2/1/edam2.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-07-11T13:53:03.690061", "date_created": "2019-07-11T13:53:03.690040", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 3377, "nb_individuals": 0, "nb_properties": 12, "max_depth": 9, "max_children": 1102, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EDAM-BIOIMAGING", "name": "EDAM Bioimaging Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 614, "download_url": "media/ontologies/EDAM-BIOIMAGING/2/edam-bioimaging.owl", "submission_id": 2, "domain": null, "description": "Bioimage informatics operations, types of data, data formats, and bioimaging topics\r\nEDAM-bioimaging is an extension to the EDAM ontology (edamontology.org) for bioimage analysis, bioimage informatics, and bioimaging, developed in collaboration with partners from NEUBIAS Cost Action CA15124 (neubias.org) and EuroBioImaging PP2.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-28T00:00:00", "date_created": "2017-04-28T05:59:52", "home_page": "http://webprotege.stanford.edu/#projects/2ce704bf-83ed-4d2e-985f-84c4841fac71/edit/Classes", "version": "alpha02", "has_ontology_language": "OWL", "nb_classes": 211, "nb_individuals": 0, "nb_properties": 12, "max_depth": 6, "max_children": 21, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EDAMT", "name": "EDAM Topics Subset", "status": "Classified", "topics": null, "species": null, "submission": { "id": 533, "download_url": "media/ontologies/EDAMT/1/edamt.owl", "submission_id": 1, "domain": null, "description": "An ontology of bioinformatics, biological and biomedical topics (EDAM Topics) ", "documentation": "edamontology.org", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-10-06T00:00:00", "date_created": "2014-10-06T12:39:31", "home_page": "edamontology.org", "version": "1.4", "has_ontology_language": "OWL", "nb_classes": 226, "nb_individuals": 0, "nb_properties": 12, "max_depth": 5, "max_children": 35, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EDEM-CONNECTONTO", "name": "eDEM-Connect: Ontology of Dementia-related Agitation and Relationship between Informal Caregivers and Persons with Dementia", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7851, "download_url": "media/ontologies/EDEM-CONNECTONTO/2/edem-connectonto.owl", "submission_id": 2, "domain": null, "description": "The EDEM-CONNECTONTO has been created to incorporate domain knowledge about the various types of agitation observed in people with dementia (PwD), as well as the dyadic relationship existing between PwD and their informal caregivers. Furthermore, it offers a structured framework for non-pharmacological interventions, enabling caregivers to effectively manage and mitigate the bidirectional effects of agitation in PwD.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-29T00:00:00", "date_created": "2025-12-29T00:00:00", "home_page": null, "version": "Version_2.0", "has_ontology_language": "OWL", "nb_classes": 252, "nb_individuals": 241, "nb_properties": 15, "max_depth": 5, "max_children": 24, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ENDOH", "name": "Environmental Determinants of Health", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7010, "download_url": "media/ontologies/ENDOH/2/endoh.owl", "submission_id": 2, "domain": null, "description": "Clean air, stable climate, adequate water, sanitation and hygiene, safe use of chemicals, protection from radiation, healthy and safe workplaces, sound agricultural practices, health-supportive cities and built environments, and a preserved nature are all prerequisites for good health.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-11-24T00:00:00", "date_created": "2024-11-25T02:39:48", "home_page": null, "version": "BETA", "has_ontology_language": "OWL", "nb_classes": 102, "nb_individuals": 1, "nb_properties": 1, "max_depth": 5, "max_children": 15, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "E-PPO", "name": "Enhanced Personal Profile Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4581, "download_url": "media/ontologies/E-PPO/1/e-ppo.owl", "submission_id": 1, "domain": null, "description": "The Enhanced Personal Profile Ontology (e-PPO) provides personal profile of personnel that are required for software requirement engineering task selection. Properties of the ontology includes static and dynamic features. Name, gender, date of birth, etc. are static in nature and may not change. Other static properties such as educational qualification and skills acquired can be updated while others including area of specialization and profession are dynamic and can be changed. Also, areas of specializations cannot be out of the scope of one’s profession, although one personnel can have multiple profession and skills, more than one profession can share things in common such as the same professional qualification may be required.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-24T00:00:00", "date_created": "2021-09-24T18:19:24", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 54, "nb_individuals": 0, "nb_properties": 3, "max_depth": 5, "max_children": 17, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EPSO", "name": "Epilepsy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4743, "download_url": "media/ontologies/EPSO/3/epso.owl", "submission_id": 3, "domain": "disease", "description": "A application driven Epilepsy Ontology sith official terms from the ILAE.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "epso.owl", "ontology_purl": "http://purl.obolibrary.org/obo/epso.owl" }, { "id": "EPSO_merged.owl", "ontology_purl": "http://purl.obolibrary.org/obo/EPSO_merged.owl" } ], "taxon": null, "date_released": "2021-12-06T15:31:46.201832", "date_created": "2021-12-06T15:31:46.201846", "home_page": "", "version": null, "has_ontology_language": "OWL", "nb_classes": 1916, "nb_individuals": 1, "nb_properties": 12, "max_depth": 16, "max_children": 41, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "e5a1d5db39fb629a1f7ae8d17bef96c9" } }, { "acronym": "ESO_C", "name": "Epilepsy Semiology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6648, "download_url": "media/ontologies/ESO_C/1/eso_c.owl", "submission_id": 1, "domain": null, "description": "Semiology of Epilepsy ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-06-04T00:00:00", "date_created": "2024-06-04T04:05:59", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 179, "nb_individuals": 0, "nb_properties": 0, "max_depth": 10, "max_children": 18, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ETHOPD", "name": "Ethiopian OPD", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4640, "download_url": "media/ontologies/ETHOPD/1/ethopd.skos", "submission_id": 1, "domain": null, "description": "This is an Ethiopian Out Patient Department register vocabulary ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-17T00:00:00", "date_created": "2021-09-17T07:40:03", "home_page": null, "version": "0.3", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 61, "nb_properties": 6, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EUPATH", "name": "VEuPathDB ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5839, "download_url": "media/ontologies/EUPATH/20/eupath.owl", "submission_id": 20, "domain": "organisms", "description": "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.5281/zenodo.6685957", "title": "Malaria study data integration and information retrieval based on OBO Foundry ontologies." } ], "products": [ { "id": "eupath.owl", "ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl" } ], "taxon": null, "date_released": "2023-06-05T12:59:47.034673", "date_created": "2023-06-05T12:59:47.034684", "home_page": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 5110, "nb_individuals": 92, "nb_properties": 83, "max_depth": 25, "max_children": 348, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "2236f2639f45c7d3dabd63823436e888" } }, { "acronym": "event", "name": "Event", "status": "Classified", "topics": null, "species": null, "submission": { "id": 590, "download_url": "media/ontologies/event/1/event.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl. This file contains terms from the http://purl.org/NET/c4dm/event.owl# namespace that are included in the vivo ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T10:05:03", "home_page": "http://vitro.mannlib.cornell.edu/ns/vitro/0.7#shortDef", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 8, "nb_individuals": 0, "nb_properties": 16, "max_depth": 0, "max_children": 7, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EVI", "name": "Evidence Graph Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8059, "download_url": "media/ontologies/EVI/11/evi.owl", "submission_id": 11, "domain": null, "description": "The Evidence Graph ontology extends core concepts from the W3C Provenance Ontology PROV-O and Bioschemas' Profiles to describe evidence for correctness of findings in biomedical publications. The semantic data model in EVI is expressed using OWL2 Web Ontology Language., The Evidence Graph ontology extends core concepts from the W3C Provenance Ontology PROV-O and Bioschemas' Profiles to describe evidence for correctness of findings in biomedical publications. The semantic data model in EVI is expressed using OWL2 Web Ontology Language (OWL2).", "documentation": "https://fairscape.github.io/EVI/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2020-07-27T00:00:00", "date_created": "2026-03-18T00:00:00", "home_page": "https://fairscape.github.io/EVI/", "version": "1.4", "has_ontology_language": "OWL", "nb_classes": 37, "nb_individuals": 3, "nb_properties": 46, "max_depth": 4, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GFF-M4M", "name": "GO FAIR M4M", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7593, "download_url": "media/ontologies/GFF-M4M/42/gff-m4m.skos", "submission_id": 42, "domain": null, "description": "Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is M4M Vocabulary. This controlled vocabulary is produced in Metadata 4 Machine (M4M) Workshop.\r\n\r\nsheet2rdf is used to build and serve M4M Vocabulary, while PURL is used to persist identifiers for the vocabulary:\r\n\r\nhttp://purl.org/m4m/", "documentation": "https://github.com/gofair-foundation/m4m-vocabulary", "publication": "['https://github.com/gofair-foundation/m4m-vocabulary']", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-09T16:08:22", "date_created": "2025-09-09T00:00:00", "home_page": "https://github.com/gofair-foundation/m4m-vocabulary", "version": "0.0.5", "has_ontology_language": "SKOS", "nb_classes": 10, "nb_individuals": 441, "nb_properties": 11, "max_depth": 1, "max_children": 5, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GFFO", "name": "Genetic Feature Format Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4987, "download_url": "media/ontologies/GFFO/1/gffo.owl", "submission_id": 1, "domain": null, "description": "An ontology to represent genome feature annotations in gff3 format.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-03-28T00:00:00", "date_created": "2022-03-28T15:58:06", "home_page": "https://github.com/mpievolbio-scicomp/GenomeFeatureFormatOntology", "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 0, "nb_properties": 33, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GLOMA_ONTOLOGY", "name": "lanxin huang", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5381, "download_url": "media/ontologies/GLOMA_ONTOLOGY/2/gloma_ontology.owl", "submission_id": 2, "domain": null, "description": "一个中文脑胶质瘤预后本体", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-21T00:00:00", "date_created": "2022-09-22T02:01:30", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 39, "nb_individuals": 182, "nb_properties": 19, "max_depth": 3, "max_children": 8, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GO-CAFA-SLIM", "name": "Proposed slim of GO for function prediction", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7316, "download_url": "media/ontologies/GO-CAFA-SLIM/1/go-cafa-slim.owl", "submission_id": 1, "domain": null, "description": "ALPHA VERSION\r\n\r\nStarting point of a slim of GO for function prediction evaluation (e.g. CAFA). Current version is identical to IBA subset.", "documentation": "https://github.com/cmungall/go-cafa-slim", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-04-22T00:00:00", "date_created": "2025-04-22T18:16:38", "home_page": "https://github.com/cmungall/go-cafa-slim", "version": null, "has_ontology_language": "OWL", "nb_classes": 11056, "nb_individuals": 0, "nb_properties": 1, "max_depth": 10, "max_children": 2594, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "REPOS", "name": "repository", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "CMF", "name": "CranioMaxilloFacial ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "NCOD", "name": "NCoD", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6206, "download_url": "media/ontologies/NCOD/1/ncod.skos", "submission_id": 1, "domain": null, "description": "National Disease classification of Ethiopia", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-05-23T00:00:00", "date_created": "2021-05-23T16:34:36", "home_page": null, "version": "0.1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 2079, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TEDDY", "name": "Terminology for the Description of Dynamics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 764, "download_url": "media/ontologies/TEDDY/11/teddy.owl", "submission_id": 11, "domain": null, "description": "The TErminology for the Description of DYnamics (TEDDY) project aims to provide an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.", "documentation": "http://identifiers.org/combine.specifications/teddy", "publication": "http://www.nature.com/msb/journal/v7/n1/full/msb201177.html", "publications": null, "products": null, "taxon": null, "date_released": "2014-04-25T15:51:25", "date_created": "2014-04-25T15:51:26", "home_page": "http://teddyontology.sourceforge.net/", "version": "rel-2014-04-24 (inferred)", "has_ontology_language": "OWL", "nb_classes": 167, "nb_individuals": 0, "nb_properties": 15, "max_depth": 7, "max_children": 21, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TEPHRAM4MEXAMPLE", "name": "Tephra M4M Example", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5009, "download_url": "media/ontologies/TEPHRAM4MEXAMPLE/1/tephram4mexample.skos", "submission_id": 1, "domain": null, "description": "Test of a Tephra controlled vocabulary for Station to be used for a M4M workshop.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-03-31T00:00:00", "date_created": "2022-03-31T21:30:40", "home_page": null, "version": "0.1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 9, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CONTSONTO", "name": "Continuity of care", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6909, "download_url": "media/ontologies/CONTSONTO/6/contsonto.owl", "submission_id": 6, "domain": null, "description": "The Ontology of Continuity of care (ContSOnto) is an emerging research area consisting of the extension of a healthcare ontology to inform the continuity of care domain. This field is positioned at the confluence of health informatics, nursing informatics, process modelling, and artificial intelligence. This research relating to ContSOnto is underpinned by health informatics standard ISO 13940 Systems of Concepts for Continuity of Care ContSOnto focuses on how information flows from different information systems across and between services for clinical applications and health care professionals to use. Figure 14.2 provides an illustration (see https://contsys.org/pages/Guest%20blog/FormalOntology)of how the different classes and relationships in the standard are represented. The subject of care refers to the individual service user and health care actors can be human or non-human, for example, a health care professional or an organization. We have added concepts related to social determinants of health (SDH) in version 1.6. ", "documentation": "https://contsys.org/pages/Guest%20blog/FormalOntology", "publication": "https://contsys.org/pages/Guest%20blog/FormalOntology", "publications": null, "products": null, "taxon": null, "date_released": "2024-03-24T00:00:00", "date_created": "2024-09-25T08:36:42", "home_page": "http://purl.org/net/for-coc", "version": "1.6", "has_ontology_language": "OWL", "nb_classes": 171, "nb_individuals": 3, "nb_properties": 143, "max_depth": 8, "max_children": 20, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COPDO", "name": "COPD Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 480, "download_url": "media/ontologies/COPDO/1/copdo.owl", "submission_id": 1, "domain": null, "description": "The COPD Ontology is a biomedical ontology used for modelling concepts associated to chronic obstructive pulmonary disease in routine clinical databases.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-06-26T00:00:00", "date_created": "2017-06-26T17:15:54", "home_page": "clininf.eu", "version": "1", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TEST_A", "name": "TEST_A", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4431, "download_url": "media/ontologies/TEST_A/1/test_a.owl", "submission_id": 1, "domain": null, "description": "This is an example ontology created by owlready2 python library", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-21T00:00:00", "date_created": "2021-04-21T20:42:16", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 102, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 28, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TEST_CBI", "name": "test_cbi", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4251, "download_url": "media/ontologies/TEST_CBI/1/test_cbi.owl", "submission_id": 1, "domain": null, "description": "Testing CBI ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-02-02T00:00:00", "date_created": "2021-02-02T18:25:06", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 0, "nb_properties": 1, "max_depth": 2, "max_children": 3, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "THREELPH", "name": "NeuroMorpho.Org three layers in subcortical regions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 638, "download_url": "media/ontologies/THREELPH/2/threelph.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of three layers that are most commonly referred to in subcortical regions.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:53:28", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 10, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "THREE-ST", "name": "3-Step Theory of suicide", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5953, "download_url": "media/ontologies/THREE-ST/4/three-st.owl", "submission_id": 4, "domain": null, "description": "This ontology contains classes, sub-classes, and relationships that map onto the 3-Step Theory of suicide (3ST). The classes represent the four factors that make up the central tenets of the theory: 1) psychological pain, 2) hopelessness, 3) connectedness, and 4) capacity for suicide. The instances of each subclass are terms that were found in VA clinical notes and indicate presence or absence of the associated 3ST factor. The terms are intended to be used in an NLP pipeline to extract 3ST information from clinical progress notes.\r\nPsychological pain, hopelessness, and capacity for suicide are major risk factors for suicide, whereas connectedness is a protective factor. In brief, the theory holds that suicide only occurs if pain and hopelessness outweigh connectedness and only then if the capacity for suicide is present.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-07-07T00:00:00", "date_created": "2023-07-13T16:19:30", "home_page": null, "version": "1.0.1", "has_ontology_language": "OWL", "nb_classes": 48, "nb_individuals": 8484, "nb_properties": 0, "max_depth": 4, "max_children": 9, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TIM", "name": "Terra Interoperability Model", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4683, "download_url": "media/ontologies/TIM/1/tim.owl", "submission_id": 1, "domain": null, "description": "The Terra Interoperability Model captures a common set of concepts and relationships for biomedical research intended to facilitate and encourage data sharing and reuse. Its purpose is to enable researchers to find highly connected biomedical data in a federated search space and support interoperability among datasets.", "documentation": "https://datamodel.terra.bio/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-11-04T00:00:00", "date_created": "2021-11-04T22:00:58", "home_page": "https://github.com/DataBiosphere/terra-interoperability-model", "version": "Created with TopBraid Composer", "has_ontology_language": "OWL", "nb_classes": 1278, "nb_individuals": 82, "nb_properties": 159, "max_depth": 10, "max_children": 80, "avg_children": 2, "classifiable": true, "nb_inconsistent": 2, "indexed": true, "md5sum": null } }, { "acronym": "TIME", "name": "OWL-Time", "status": "Classified", "topics": null, "species": null, "submission": { "id": 188, "download_url": "media/ontologies/TIME/2/time.owl", "submission_id": 2, "domain": null, "description": "OWL-Time is an OWL-2 DL ontology of temporal concepts, for describing the temporal properties of resources in the world or described in Web pages. The ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. Time positions and durations may be expressed using either the conventional (Gregorian) calendar and clock, or using another temporal reference system such as Unix-time, geologic time, or different calendars.", "documentation": "https://www.w3.org/TR/owl-time/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-09-19T01:12:12", "date_created": "2017-09-19T01:12:12", "home_page": "https://www.w3.org/TR/owl-time/", "version": "2017", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EXTRACT", "name": "EXTeRnAl Conditions Taxonomy (EXTRACT)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5833, "download_url": "media/ontologies/EXTRACT/2/extract.skos", "submission_id": 2, "domain": null, "description": "Controlled vocabularies such as taxonomies allow an accurate and controlled approach in describing datasets. One of such controlled vocabulary is Wind Energy Taxonomy of External Conditions. This taxonomy is the result of EERA JP WIND IRPWind Open Data initiative that took place in 2017 in which wind energy experts generated the first version of the taxonomy as an input for defining and structuring wind energy metadata.", "documentation": "https://github.com/DTUWindEnergy/EXTRACT-taxonomy", "publication": "https://github.com/DTUWindEnergy/EXTRACT-taxonomy", "publications": null, "products": null, "taxon": null, "date_released": "2023-05-24T01:05:38", "date_created": "2023-05-24T01:05:39", "home_page": "https://github.com/DTUWindEnergy/EXTRACT-taxonomy", "version": "v0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 20, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FaBiO", "name": "FaBiO (bibliographic)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 43, "download_url": "media/ontologies/FaBiO/1/fabio.owl", "submission_id": 1, "domain": null, "description": "This file is imported by the vivo-core-public-1.5.owl file. It contains terms relating to documents from the http://purl.org/spar/fabio/ namespace that are included in the VIVO ontology. FaBiO is a FRBR-aligned Bibliographic Ontology that is part of the Semantic Publishing and Referencing (SPAR) suite of ontologies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T10:12:47", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FALLS", "name": "falls prevention ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5443, "download_url": "media/ontologies/FALLS/1/falls.owl", "submission_id": 1, "domain": null, "description": "This ontology is about a falls prevention intervention record. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-10-20T00:00:00", "date_created": "2022-10-20T07:58:16", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 30, "nb_individuals": 17, "nb_properties": 38, "max_depth": 3, "max_children": 7, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FDT-O", "name": "FAIR Data Train Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5529, "download_url": "media/ontologies/FDT-O/9/fdt-o.owl", "submission_id": 9, "domain": null, "description": "The FAIR Data Train Ontology provides the definitions of concepts and relations used in the FAIR Data Train environment.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-01T02:04:59", "date_created": "2022-12-01T02:05:01", "home_page": null, "version": "- Refactored FHIR API and FHIR Train as sub-classes of REST API and REST Train, respectively.", "has_ontology_language": "OWL", "nb_classes": 47, "nb_individuals": 19, "nb_properties": 14, "max_depth": 6, "max_children": 6, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IOBC", "name": "Interlinking Ontology for Biological Concepts", "status": "Incoherent", "topics": null, "species": null, "submission": { "id": 4577, "download_url": "media/ontologies/IOBC/25/iobc.owl", "submission_id": 25, "domain": null, "description": "Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE.\r\n\r\nThe license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\".", "documentation": "https://github.com/kushidat/IOBC/blob/master/README.md", "publication": "http://purl.jp/bio/4/publications/iobc", "publications": null, "products": null, "taxon": null, "date_released": "2021-09-25T00:00:00", "date_created": "2021-09-25T19:54:14", "home_page": "https://github.com/kushidat/IOBC", "version": "version 1.6.0", "has_ontology_language": "OWL", "nb_classes": 126847, "nb_individuals": 66923, "nb_properties": 59, "max_depth": 16, "max_children": 19945, "avg_children": 2846, "classifiable": true, "nb_inconsistent": 3094, "indexed": true, "md5sum": null } }, { "acronym": "XL", "name": "Cross-linker reagents ontology", "status": "Unknown", "topics": null, "species": null, "submission": null }, { "acronym": "GAMUTS", "name": "Radiology Gamuts Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6692, "download_url": "media/ontologies/GAMUTS/25/gamuts.owl", "submission_id": 25, "domain": null, "description": "In radiology, a \"gamut\" is the set of conditions that can cause a specified imaging finding. The Radiology Gamuts Ontology (RGO) links more than 16,000 diseases and imaging findings. The causal relation (may_cause; inverse, may_be_caused_by) connects findings and possible causes.\r\n\r\nThis work is made available under provisions of the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license.", "documentation": "https://www.gamuts.net/about.php", "publication": "https://www.gamuts.net/about.php", "publications": null, "products": null, "taxon": null, "date_released": "2024-06-24T00:00:00", "date_created": "2024-06-24T11:52:44", "home_page": "https://www.gamuts.net/", "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 18001, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 12471, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GANGLIONH", "name": "NeuroMorpho.Org Ganglion cell type", "status": "Classified", "topics": null, "species": null, "submission": { "id": 231, "download_url": "media/ontologies/GANGLIONH/2/ganglionh.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of Ganglion cell types based on Retinal function.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:35:46", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 6, "nb_properties": 0, "max_depth": 2, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GB", "name": "GlycanBind", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5883, "download_url": "media/ontologies/GB/3/gb.owl", "submission_id": 3, "domain": null, "description": "GlycanBind is an ontology for representing glycan and pathogen binding interaction data in RDF.\r\nMany of the terms are based on the data originally contained in the SugarBind database.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-06-11T00:00:00", "date_created": "2023-06-13T12:04:05", "home_page": null, "version": "1.1.1", "has_ontology_language": "OWL", "nb_classes": 13, "nb_individuals": 0, "nb_properties": 11, "max_depth": 2, "max_children": 8, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GBM", "name": "Glioblastoma", "status": "Classified", "topics": null, "species": null, "submission": { "id": 48, "download_url": "media/ontologies/GBM/1/gbm.owl", "submission_id": 1, "domain": null, "description": "Ontology of Glioblastoma", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-27T00:00:00", "date_created": "2015-08-27T21:56:32", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 109, "nb_individuals": 0, "nb_properties": 38, "max_depth": 4, "max_children": 22, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GBOL", "name": "GBOL", "status": "Classified", "topics": null, "species": null, "submission": { "id": 881, "download_url": "media/ontologies/GBOL/1/gbol.owl", "submission_id": 1, "domain": null, "description": " Genome Biology Ontology Language (GBOL) ", "documentation": "http://gbol.life", "publication": "https://www.biorxiv.org/content/early/2017/09/05/184747", "publications": null, "products": null, "taxon": null, "date_released": "2017-09-05T00:00:00", "date_created": "2017-11-28T14:53:41", "home_page": "http://gbol.life", "version": "1", "has_ontology_language": "OWL", "nb_classes": 271, "nb_individuals": 805, "nb_properties": 142, "max_depth": 6, "max_children": 34, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GCBO", "name": "Global Code Book Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7397, "download_url": "media/ontologies/GCBO/6/gcbo.owl", "submission_id": 6, "domain": null, "description": "An initial version of the RADx Global Code Book Ontology. This ontology describes Tier 1 data elements that are used in the RADx Global Code Book.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-06-04T00:00:00", "date_created": "2025-06-04T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 1349, "nb_individuals": 0, "nb_properties": 1, "max_depth": 12, "max_children": 127, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GCDFO", "name": "DFO Salmon Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8071, "download_url": "media/ontologies/GCDFO/3/gcdfo.owl", "submission_id": 3, "domain": null, "description": "OWL + SKOS ontology for DFO salmon data: stocks/CUs/MUs, survey events, escapement measurements, and GSI constructs; aligns to DwC via rdfs:subClassOf; hybrid approach with SKOS for methods and OWL for events.", "documentation": "https://github.com/dfo-pacific-science/dfo-salmon-ontology", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-06T00:00:00", "date_created": "2026-03-30T00:00:00", "home_page": null, "version": "0.0.8", "has_ontology_language": "OWL", "nb_classes": 151, "nb_individuals": 174, "nb_properties": 42, "max_depth": 7, "max_children": 24, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GDMT", "name": "Generic Dataset Metadata Template Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6881, "download_url": "media/ontologies/GDMT/5/gdmt.skos", "submission_id": 5, "domain": null, "description": "An initial version of the Generic Dataset Metadata Template vocabulary", "documentation": "https://github.com/bmir-radx/gdmt", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-09-10T00:00:00", "date_created": "2024-09-10T20:39:42", "home_page": "https://github.com/bmir-radx/gdmt", "version": "1.1.0-alpha", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 1990, "nb_properties": 62, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GDOA", "name": "Graphic Descriptor Ontology Anatomy Extension", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8060, "download_url": "media/ontologies/GDOA/10/gdoa.owl", "submission_id": 10, "domain": null, "description": "For the best browsing experience, see our illustrated browser at https://gdo.endlessforms.info that provides visual depictions of many classes and individuals. The GitHub repository is at https://github.com/endlessforms-info/GDO-GDOA. \r\n<br><br>\r\nThe version of the GDO/A here is the GDOA and the GDO merged. The version number applies to the merged variant. For separate GDOA and GDO artifacts, please visit the GitHub repo above. \r\n<br /><br />\r\nThe Graphic Descriptor Ontology (GDO) is intended for use in describing graphics that represent the form of objects. The Graphic Descriptor Ontology Anatomy extension (GDOA) extends the GDO to the domain of anatomical graphics by providing classes for anatomical views and anatomically-relevant region mark roles, such as representing a type of body tissue or body fluid., The Graphic Descriptor Ontology (GDO) is intended for use in describing graphics that represent the form of objects. It uses the language of visual communication, illustration, and technical drawing. The GDO is rooted in the Basic Formal Ontology (BFO) and uses several classes from the Information Entity Ontology of the Common Core Ontologies as a mid-level ontology., The Graphic Descriptor Ontology (GDO) is intended for use in describing graphics that represent the form of objects. The Graphic Descriptor Ontology Anatomy extension (GDOA) extends the GDO to the domain of anatomical graphics by providing classes for anatomical views and anatomically-relevant region mark roles", "documentation": "https://gdo.endlessforms.info/about", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-17T00:00:00", "date_created": "2026-03-17T00:00:00", "home_page": "https://gdo.endlessforms.info", "version": "1.1.4", "has_ontology_language": "OWL", "nb_classes": 196, "nb_individuals": 86, "nb_properties": 29, "max_depth": 12, "max_children": 10, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GDPR", "name": "Data Protection", "status": "Classified", "topics": [ "Personal Data" ], "species": [ "Data" ], "submission": { "id": 5039, "download_url": "media/ontologies/GDPR/1/gdpr.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-04-18T19:27:19.637132", "date_created": "2022-04-18T19:27:19.637110", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 55, "nb_individuals": 7, "nb_properties": 11, "max_depth": 4, "max_children": 14, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GENAI", "name": "Generative AI Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6960, "download_url": "media/ontologies/GENAI/1/genai.owl", "submission_id": 1, "domain": null, "description": "The Generative AI Ontology - This is an OWL ontology that provides a comprehensive representation of concepts, relationships, and processes in generative AI. It covers various model types (e.g., LLMs, GANs, VAEs), architectural components (e.g., transformers, diffusion models), training techniques (e.g., RLHF, self-supervised learning), fine-tuning methods (e.g., LoRA, Prompt Tuning), tools, deployment strategies, and ethical considerations. This ontology serves as a resource for research and proof-of-concept development, allowing detailed exploration and understanding of generative AI systems.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-10-24T00:00:00", "date_created": "2024-10-24T09:53:29", "home_page": "https://ruslanmv.com/", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 55, "nb_individuals": 0, "nb_properties": 11, "max_depth": 3, "max_children": 19, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GENDER", "name": "Gender Identity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5545, "download_url": "media/ontologies/GENDER/1/gender.skos", "submission_id": 1, "domain": null, "description": "This vocabulary makes up the different gender identities - Female, Male and Other.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-07T00:00:00", "date_created": "2022-12-07T18:37:29", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 5, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GENEPIO", "name": "Genomic Epidemiology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7095, "download_url": "media/ontologies/GENEPIO/25/genepio.owl", "submission_id": 25, "domain": "health", "description": "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "genepio.owl", "homepage": "http://genepio.github.io/genepio/", "ontology_purl": "http://purl.obolibrary.org/obo/genepio.owl" } ], "taxon": null, "date_released": "2025-01-06T13:00:30.419951", "date_created": "2025-01-06T13:00:30.419954", "home_page": "http://genepio.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 8728, "nb_individuals": 958, "nb_properties": 62, "max_depth": 19, "max_children": 153, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "23f14411076cbe6830dc11ddb521cd3a" } }, { "acronym": "GENO", "name": "Genotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7946, "download_url": "media/ontologies/GENO/30/geno.owl", "submission_id": 30, "domain": "biological systems", "description": "An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "geno.owl", "title": "GENO", "ontology_purl": "http://purl.obolibrary.org/obo/geno.owl" } ], "taxon": null, "date_released": "2026-02-09T12:32:17.719172", "date_created": "2026-02-09T12:32:17.719177", "home_page": "https://github.com/monarch-initiative/GENO-ontology/", "version": null, "has_ontology_language": "OWL", "nb_classes": 590, "nb_individuals": 325, "nb_properties": 258, "max_depth": 19, "max_children": 48, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "402d2df244b9da09f9251f1f5e686550" } }, { "acronym": "GEO", "name": "Geographical Entity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7165, "download_url": "media/ontologies/GEO/6/geo.owl", "submission_id": 6, "domain": "environment", "description": "An ontology of geographical entities", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "geo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/geo.owl" } ], "taxon": null, "date_released": "2025-02-10T12:20:12.508288", "date_created": "2025-02-10T12:20:12.508293", "home_page": "https://github.com/ufbmi/geographical-entity-ontology/wiki", "version": null, "has_ontology_language": "OWL", "nb_classes": 91, "nb_individuals": 4, "nb_properties": 49, "max_depth": 9, "max_children": 6, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "8cd81e058db70d56c592c2386a001aad" } }, { "acronym": "geopolitical", "name": "Geopolitical", "status": "Classified", "topics": null, "species": null, "submission": { "id": 44, "download_url": "media/ontologies/geopolitical/1/geopolitical.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl\r\n\r\nThis is the geopolitical ontology from the Food and Agriculture Organization of the United Nations", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T01:17:12", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "version 1.1", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 0, "nb_properties": 95, "max_depth": 2, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GERO", "name": "Gerotranscendence Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7999, "download_url": "media/ontologies/GERO/2/gero.owl", "submission_id": 2, "domain": null, "description": "The Gerotranscendence Ontology contains terms for defining and classifying concepts related to gerotranscendence, including its dimensions, experiences, and outcomes. Its concepts and relations support the development of tools and resources to better understand gerotranscendence and enable integration and interoperability of data across studies.\r\n\r\nThe Gerotranscendence Ontology is developed as a subset of (http://purl.obolibrary.org/obo/phases.owl). , and outcomes. Its concepts and relations support the development of tools and resources to better understand gerotranscendence and enable integration and interoperability of data across studies.\n\nThe Gerotranscendence Ontology is developed as a subset of (http://purl.obolibrary.org/obo/phases.owl). Issues and term requests can be submitted at (https://github.com/Buffalo-Ontology-Group/phases/issues)", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-27T02:06:02", "date_created": "2026-02-26T00:00:00", "home_page": null, "version": "2026-02-25", "has_ontology_language": "OWL", "nb_classes": 53, "nb_individuals": 40, "nb_properties": 2, "max_depth": 10, "max_children": 4, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TST7", "name": "FIELDLAB3_2023", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6178, "download_url": "media/ontologies/TST7/3/tst7.skos", "submission_id": 3, "domain": null, "description": "Final skos", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-03T00:00:00", "date_created": "2023-11-03T14:09:36", "home_page": "https://cedar.metadatacenter.org/templates/edit/https://repo.metadatacenter.org/templates/1bcab355-0b9f-4449-9f12-99c3552df353?folderId=https:%2F%2Frepo.metadatacenter.org%2Ffolders%2Fe4bd3d33-b817-4357-aed7-812b84200c88", "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 7, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COVID19-IBO", "name": "Covid19 Impact on Banking Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4651, "download_url": "media/ontologies/COVID19-IBO/6/covid19-ibo.owl", "submission_id": 6, "domain": null, "description": "Covid19 Impact on Banking Ontology (Covid19-IBO) provides semantic information about the impact of the Covid-19 on the banking sector of India", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-07T00:00:00", "date_created": "2021-06-07T11:29:25", "home_page": null, "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 159, "nb_individuals": 0, "nb_properties": 34, "max_depth": 6, "max_children": 20, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COVID-19-ONT-PM", "name": "COVID-19OntologyInPatternMedicine", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5008, "download_url": "media/ontologies/COVID-19-ONT-PM/9/covid-19-ont-pm.owl", "submission_id": 9, "domain": null, "description": "This ontology focuses on the aspects of the scientific findings in the COVID-19 fields in order to help the efforts against the outbreak of the pandemic. \r\nIt is expected, through the ontology, to understand the medical conditions and make medical decisions in more integrated or systematic ways, by the engineerized or calculatable methods, rahter than the experience-based ways, usually used in the Traditional Information-Pieces-Accumulation Medicine(TIPAM).\r\nThe researches of the ontology involve the exploratory works of the Pattern Medicine(PM) and so called the Generalized Biomedical Dynamics(GBMD) , especially concentrating to the relations between the molecular and clinic levels.\r\n\r\nPlease pay attention to the background researches or the pilot project related to this ontolgy, and the introduction and publications, as well. \r\nThe relative artcle under going is at stie:\r\n\r\nhttps://blog.51.ca/u-345129/2020/11/13/the-preliminary-researches-on-the-data-dynamics-of-covid-19/", "documentation": "https://blog.51.ca/u-345129/2020/11/13/the-preliminary-researches-on-the-data-dynamics-of-covid-19/", "publication": "https://blog.51.ca/u-345129/2020/11/13/the-preliminary-researches-on-the-data-dynamics-of-covid-19/", "publications": null, "products": null, "taxon": null, "date_released": "2021-08-20T00:00:00", "date_created": "2022-04-05T03:13:03", "home_page": "https://blog.51.ca/u-345129/2020/11/13/the-preliminary-researches-on-the-data-dynamics-of-covid-19/", "version": "007", "has_ontology_language": "OWL", "nb_classes": 299, "nb_individuals": 6, "nb_properties": 11, "max_depth": 9, "max_children": 39, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CPTAC", "name": "CPTAC Proteomics Pipeline Infrastructure Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 366, "download_url": "media/ontologies/CPTAC/3/cptac.owl", "submission_id": 3, "domain": null, "description": "a basic ontology which describes the proteomics pipeline infrastructure for CPTAC project", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-05-20T07:00:00", "date_created": "2009-05-20T22:37:43", "home_page": null, "version": "alpha 1.1", "has_ontology_language": "OWL", "nb_classes": 19, "nb_individuals": 0, "nb_properties": 430, "max_depth": 0, "max_children": 19, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CRYOEM", "name": "Cryo Electron Microscopy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4349, "download_url": "media/ontologies/CRYOEM/4/cryoem.owl", "submission_id": 4, "domain": null, "description": "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-07-23T00:00:00", "date_created": "2021-03-12T14:55:47", "home_page": "http://scipion.i2pc.es/ontology/cryoem", "version": "2021-03-09", "has_ontology_language": "OWL", "nb_classes": 111, "nb_individuals": 0, "nb_properties": 0, "max_depth": 7, "max_children": 11, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CTU_BEREADY_GEM", "name": "CTU Bern BEReady Gemeinden", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5721, "download_url": "media/ontologies/CTU_BEREADY_GEM/3/ctu_beready_gem.skos", "submission_id": 3, "domain": null, "description": "Ontology used for project 1694, BEReady (be ready for future pandemics)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-03-10T00:00:00", "date_created": "2023-03-10T11:05:45", "home_page": "http://www.ctu.unibe.ch", "version": "gem_onto_1level_v0_01", "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 340, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DCTERMS", "name": "DCMI Metadata Terms: properties in /terms/ namespace", "status": "Classified", "topics": null, "species": null, "submission": { "id": 550, "download_url": "media/ontologies/DCTERMS/1/dcterms.skos", "submission_id": 1, "domain": null, "description": "DCMI properties in the /terms/ namespace", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-06-04T00:00:00", "date_created": "2017-07-13T23:52:35", "home_page": "http://dublincore.org/documents/dcmi-terms/", "version": null, "has_ontology_language": "SKOS", "nb_classes": 25, "nb_individuals": 100, "nb_properties": 37, "max_depth": 0, "max_children": 16, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DDANAT", "name": "Dictyostelium discoideum anatomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6024, "download_url": "media/ontologies/DDANAT/134/ddanat.owl", "submission_id": 134, "domain": "anatomy and development", "description": "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/18366659", "title": "An anatomy ontology to represent biological knowledge in Dictyostelium discoideum" } ], "products": [ { "id": "ddanat.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ddanat.owl" }, { "id": "ddanat.obo", "ontology_purl": "http://purl.obolibrary.org/obo/ddanat.obo" } ], "taxon": { "id": "NCBITaxon:44689", "label": "Dictyostelium discoideum" }, "date_released": "2023-08-28T12:19:40.596752", "date_created": "2023-08-28T12:19:40.596761", "home_page": "http://dictybase.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 135, "nb_individuals": 0, "nb_properties": 2, "max_depth": 4, "max_children": 20, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "15a1ae902a76a1d07b41decde76cfb7e" } }, { "acronym": "DOREMUS-KEYS", "name": "Doremus List of Keys", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1617, "download_url": "media/ontologies/DOREMUS-KEYS/3/doremus-keys.skos", "submission_id": 3, "domain": null, "description": "The sum of relations, melodic and harmonic, existing between the tones of a scale or musical system.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-06-30T00:00:00", "date_created": "2018-07-02T16:14:57", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 60, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DPCO", "name": "Diabetes Pharmacology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5570, "download_url": "media/ontologies/DPCO/2/dpco.owl", "submission_id": 2, "domain": null, "description": "The Diabetes Pharmacology Ontology contains the classes needed to describe antihyperglycemic therapies, pharmacotherapy factors, and diagnostic factors.", "documentation": "https://tetherless-world.github.io/diabetes-pharmacology-ontology/docs/DiabetesPharmacologyOntology/index-en.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-10-31T00:00:00", "date_created": "2022-12-18T15:38:21", "home_page": "https://tetherless-world.github.io/diabetes-pharmacology-ontology/", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 273, "nb_individuals": 0, "nb_properties": 6, "max_depth": 7, "max_children": 19, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DSEO", "name": "Data Science Education Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 691, "download_url": "media/ontologies/DSEO/2/dseo.owl", "submission_id": 2, "domain": null, "description": "Simple ISA hierarchical taxonomy denoting subfields of study in data science for use in educational applications. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-21T00:00:00", "date_created": "2017-07-17T20:21:47", "home_page": "http://bigdatau.org/about_erudite", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DTO", "name": "Drug Target Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 937, "download_url": "media/ontologies/DTO/4/dto.owl", "submission_id": 4, "domain": null, "description": "Drug Target Ontology (DTO) is being developed at the University of Miami in the research group of Stephan Schürer. DTO is supported by grant U54CA189205 (Illuminating the Druggable Genome Knowledge Management Center, Tudor Oprea, PI) awarded by the NCI through the NIH Common Fund. It is a component of the Illuminating the Druggable Genome (IDG) project (https://commonfund.nih.gov/idg). The DTO project develops a novel semantic framework to formalize knowledge about drug targets with a focus on the current IDG protein families. The DTO is developed as a reference for drug targets with the longer-term goal to create a community standard that will facilitate the integration of diverse drug discovery information from numerous heterogeneous resources. The first version of the DTO consists of asserted class hierarchies of the four IDG protein families, GPCRs, kinases, ion channels, and nuclear hormone receptors. Protein classes are linked to tissue and disease via different levels of confidence. DTO also contains drug target development level classifications developed in the IDG project (http://targetcentral.ws/), and functional and qualitative annotations and classifications for kinase proteins, GPCR ligands and ion channels. DTO is modeled in OWL2-DL to enable further classification by inference reasoning and SPARQL queries. DTO is implemented following a modularization approach. DTO is used as the organizational framework for drug targets in the IDG PHAROS User Interface Portal (https://pharos.nih.gov) and also the Tin-X Target Importance and Novelty Explorer (http://newdrugtargets.org).", "documentation": "http://drugtargetontology.org/", "publication": "http://drugtargetontology.org/", "publications": null, "products": null, "taxon": null, "date_released": "2017-12-08T02:01:34", "date_created": "2017-12-08T02:01:35", "home_page": "http://drugtargetontology.org/", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 10075, "nb_individuals": 3, "nb_properties": 42, "max_depth": 11, "max_children": 636, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EFO", "name": "Experimental Factor Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 87, "download_url": "media/ontologies/EFO/168/efo.owl", "submission_id": 168, "domain": null, "description": "The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in multiple resources at the EBI and Open Targets. The ontology has been developed to increase the richness of the annotations that are currently made in resources and to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology pulls together classes from reference ontologies such as disease, cell line, cell type and anatomy and adds axiomatisation as necessary to connect areas such as disease to phenotype. Contact EFO users list for information: efo-users@lists.sourceforge.net", "documentation": "http://www.ebi.ac.uk/efo", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-17T01:03:46", "date_created": "2017-10-17T01:03:46", "home_page": "http://www.ebi.ac.uk/efo", "version": "2.89", "has_ontology_language": "OWL", "nb_classes": 20460, "nb_individuals": 0, "nb_properties": 39, "max_depth": 14, "max_children": 1428, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EPISEM", "name": "Epilepsy Semiology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3092, "download_url": "media/ontologies/EPISEM/8/episem.owl", "submission_id": 8, "domain": null, "description": "An ontology designed to capture the semiology of epilepsy including ictal, post-ictal, inter-ictal, and aura signs. For the branches entitled \"disease\", \"etiologic factor\", \"epidemiologic factor\"--see ESSO ontology on this website for origin of terms.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-11-07T00:00:00", "date_created": "2019-11-07T23:18:10", "home_page": null, "version": "5.0", "has_ontology_language": "OWL", "nb_classes": 1594, "nb_individuals": 0, "nb_properties": 0, "max_depth": 9, "max_children": 99, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EPO", "name": "Early Pregnancy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 767, "download_url": "media/ontologies/EPO/1/epo.owl", "submission_id": 1, "domain": null, "description": "The early pregnancy ontology contains the concepts to describe ectopic pregnancy ultrasound images, organized into several subsumption hierarchies for types of ectopic pregnancies and the signs, anatomical structures and technical elements of imaging associated with ectopic pregnancy.\r\nVersion 1.1 was used for ultrasound image annotations (Dhombres et al. Developing a knowledge base to support the annotation of ultrasound images of ectopic pregnancy. J Biomed Semantics, 2017)\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-05-28T00:00:00", "date_created": "2016-06-03T17:38:39", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 1388, "nb_individuals": 0, "nb_properties": 48, "max_depth": 20, "max_children": 80, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GOLDTERMS", "name": "GOLD Ecosystem Classification", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7147, "download_url": "media/ontologies/GOLDTERMS/7/goldterms.owl", "submission_id": 7, "domain": null, "description": "A rendering of the JGI GOLD ecosystem classification (https://gold.jgi.doe.gov/ecosystem_classification)", "documentation": "https://gold.jgi.doe.gov/ecosystem_classification", "publication": "https://pubmed.ncbi.nlm.nih.gov/20653767/", "publications": null, "products": null, "taxon": null, "date_released": "2025-01-28T02:06:09", "date_created": "2025-01-28T02:06:12", "home_page": "https://github.com/cmungall/gold-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 1825, "nb_individuals": 0, "nb_properties": 7, "max_depth": 5, "max_children": 709, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "goslim_goa", "name": "GOA and whole proteome analysis", "status": "Classified", "topics": null, "species": null, "submission": { "id": 586, "download_url": "media/ontologies/goslim_goa/1/goslim_goa.obo", "submission_id": 1, "domain": null, "description": "Developed by N. Mulder, M. Pruess", "documentation": "http://www.geneontology.org/GO.slims.shtml", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-09-22T07:00:00", "date_created": "2009-09-27T17:34:48", "home_page": null, "version": "1.761 (CVS version) ", "has_ontology_language": "OBO", "nb_classes": 81, "nb_individuals": 0, "nb_properties": 5, "max_depth": 3, "max_children": 11, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "goslim_pir", "name": "Protein Information Resource slim", "status": "Classified", "topics": null, "species": null, "submission": { "id": 472, "download_url": "media/ontologies/goslim_pir/1/goslim_pir.obo", "submission_id": 1, "domain": null, "description": "Developed by Darren Natale of PIR", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-09-22T07:00:00", "date_created": "2009-09-27T17:52:34", "home_page": null, "version": "1.6 (CVS version)", "has_ontology_language": "OBO", "nb_classes": 537, "nb_individuals": 0, "nb_properties": 5, "max_depth": 5, "max_children": 109, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TIMEBANK", "name": "Timebank Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3841, "download_url": "media/ontologies/TIMEBANK/2/timebank.owl", "submission_id": 2, "domain": null, "description": "The Timebank Ontology is used to describe Timebank systems for Peer-to-Peer Service Exchange. A Timebank allows user to store virtual money, often called a Time Dollar, into a bank account. This virtual currency can be earned by helping fellow Timebank users and spent by requesting help from others. The main goal of the ontology is to facilitate the matching between helpers and requesters of help.", "documentation": "https://w3id.org/timebank", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-08-05T00:00:00", "date_created": "2020-08-05T09:44:23", "home_page": "https://w3id.org/timebank", "version": "0.3", "has_ontology_language": "OWL", "nb_classes": 133, "nb_individuals": 7, "nb_properties": 48, "max_depth": 5, "max_children": 12, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TMA", "name": "Tissue Microarray Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 27, "download_url": "media/ontologies/TMA/1/tma.owl", "submission_id": 1, "domain": null, "description": "Tissue microarrays (TMA) are enormously useful tools for translational research, but incompatibilities in database systems between various researchers and institutions prevent the efficient sharing of data that could help realize their full potential. The Resource Description Framework (RDF) provides a flexible method to represent knowledge in triples, which take the form Subject-Predicate-Object. All data resources are described using Uniform Resource Identifiers (URI), which are global in scope. We present an OWL (Web Ontology Language) schema that expands upon the TMA data exchange specification to address this issue and assist in data sharing and integration.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T18:57:44", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 7, "nb_individuals": 0, "nb_properties": 25, "max_depth": 2, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TM-MER", "name": "Traditional Medicine Meridian Value Sets", "status": "Classified", "topics": null, "species": null, "submission": { "id": 636, "download_url": "media/ontologies/TM-MER/1/tm-mer.owl", "submission_id": 1, "domain": null, "description": "The meridian value set used in the International Classification of Traditional Medicine.", "documentation": "https://sites.google.com/site/whoictm/home", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-02-01T08:00:00", "date_created": "2011-02-02T01:39:56", "home_page": "https://sites.google.com/site/whoictm/home", "version": "1", "has_ontology_language": "OWL", "nb_classes": 20, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 20, "avg_children": 20, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EHDA", "name": "Human Developmental Anatomy Ontology, timed version", "status": "Classified", "topics": null, "species": null, "submission": { "id": 233, "download_url": "media/ontologies/EHDA/6/ehda.obo", "submission_id": 6, "domain": null, "description": "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-02-15T08:00:00", "date_created": "2011-02-16T02:07:35", "home_page": "http://genex.hgu.mrc.ac.uk/", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 8340, "nb_individuals": 0, "nb_properties": 2, "max_depth": 1, "max_children": 23, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TOCWWE", "name": "Treatment of Childbearing-age Women with Epilepsy ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5298, "download_url": "media/ontologies/TOCWWE/1/tocwwe.owl", "submission_id": 1, "domain": null, "description": "Ontology of epilepsy treatment, particularly for childbearing-age women with epilepsy.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-08-18T00:00:00", "date_created": "2021-08-19T01:41:03", "home_page": null, "version": "20210819", "has_ontology_language": "OWL", "nb_classes": 264, "nb_individuals": 0, "nb_properties": 0, "max_depth": 8, "max_children": 11, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EHDAA", "name": "Human Developmental Anatomy Ontology, abstract version 1", "status": "Classified", "topics": null, "species": null, "submission": { "id": 427, "download_url": "media/ontologies/EHDAA/6/ehdaa.obo", "submission_id": 6, "domain": null, "description": "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just <i>heart</i> really means <i>heart (CS 9-20)</i>. Timing details will be added to the abstract version of the ontology in a future release.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-02-15T08:00:00", "date_created": "2011-02-16T02:06:55", "home_page": "http://genex.hgu.mrc.ac.uk/", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 2314, "nb_individuals": 0, "nb_properties": 1, "max_depth": 0, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TOK", "name": "Terminological and Ontological Knowledge Resources Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 572, "download_url": "media/ontologies/TOK/3/tok.owl", "submission_id": 3, "domain": null, "description": "An Ontology describing Resources having different formats. This Ontology can be used to annotate and describe Terminological, Ontological Knowledge resources.", "documentation": "http://cui.unige.ch/isi/onto/tok/OWL_Doc/", "publication": "http://cui.unige.ch/~ghoula/", "publications": null, "products": null, "taxon": null, "date_released": "2010-01-01T08:00:00", "date_created": "2010-05-20T01:48:26", "home_page": "http://cui.unige.ch/~ghoula/", "version": "0.2.1", "has_ontology_language": "OWL", "nb_classes": 193, "nb_individuals": 25, "nb_properties": 113, "max_depth": 5, "max_children": 17, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TP_REL_FAM", "name": "Relation familiales", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5920, "download_url": "media/ontologies/TP_REL_FAM/2/tp_rel_fam.owl", "submission_id": 2, "domain": null, "description": "TP4 concernant les relations familiales ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-07-02T00:00:00", "date_created": "2023-07-02T11:54:54", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 8, "nb_individuals": 17, "nb_properties": 11, "max_depth": 2, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COVIDCRFRAPID", "name": "WHO COVID-19 Rapid Version CRF semantic data model", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 3725, "download_url": "media/ontologies/COVIDCRFRAPID/12/covidcrfrapid.owl", "submission_id": 12, "domain": null, "description": "This is a semantic data model for the WHO's COVID-19 case record form RAPID version from April 8 2020. It aims at providing semantic references to the questions and answers of the form.\r\n\r\nChanges in the version 1.1.4:\r\n- Corrected: Urea_(BUN) to remove the \"()\", which may cause resolution and validation issues;\r\n\r\nChanges in the version 1.1.3:\r\n- Corrected: Chloroquine/hydroxychloroquine to remove the \"/\", which may cause resolution issues;\r\n\r\nChanges in version 1.1.2:\r\n- Corrected: Cough with haemoptysis because the IRI was mispelled;\r\n- Corrected: CPAP/NIV Mask to remove the \"/\", which may cause resolution issues;\r\n- Added: missing \"part of\" property for section 1g.\r\n- Added: \"has other measurement unit label\" property for the laboratory results that may use a different unit than specified in the CRF;\r\n- Added: missing \"has value\" for the Which coronavirus question;\r\n- Added: missing possibility to enter the name of a specific antibiotic in section 3c of the CRF;\r\n- Added: missing question on testing the presence of other pathogenic of public health interest from section 3a of the CRF.\r\n\r\nChanges in version 1.1.1:\r\n- Added: Facility Name to identify the care facility in which the case is reported from.\r\n\r\nChanges in version 1.1.0:\r\n- This version covers the modifications introduced by the WHO COVID-19 Rapid CRF from April 8, 2020. The model maintains backward compatibility with the WHO COVID-19 Rapid CRF from March 23, 2020.", "documentation": "https://vodan-ontology.github.io", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-06-24T00:00:00", "date_created": "2020-06-24T14:46:48", "home_page": "http://purl.org/vodan/whocovid19crfsemdatamodel/", "version": "1.1.4", "has_ontology_language": "OWL", "nb_classes": 398, "nb_individuals": 333, "nb_properties": 6, "max_depth": 7, "max_children": 91, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ELECTRICA", "name": "Ontology for ELEctronic tool for Clinicians, Trainers and Researchers In Child Abuse", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6869, "download_url": "media/ontologies/ELECTRICA/7/electrica.owl", "submission_id": 7, "domain": null, "description": "An ontology to help describe data for ELEctronic tool for Clinicians, Trainers and Researchers In Child Abuse", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-09-10T01:06:03", "date_created": "2024-09-10T01:06:05", "home_page": "https://github.com/fatibaba/electrica", "version": "2024-09-09", "has_ontology_language": "OWL", "nb_classes": 1741, "nb_individuals": 0, "nb_properties": 30, "max_depth": 13, "max_children": 26, "avg_children": 1, "classifiable": true, "nb_inconsistent": 1, "indexed": true, "md5sum": null } }, { "acronym": "EGO", "name": "Epigenome Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 18, "download_url": "media/ontologies/EGO/1/ego.owl", "submission_id": 1, "domain": null, "description": "The Epigenome Ontology (EGO) a biomedical ontology for integrative epigenome knowledge representation and data analysis.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-30T00:00:00", "date_created": "2016-07-03T23:00:59", "home_page": "https://github.com/EGO-ontology", "version": "Arbor version; 1.0.1", "has_ontology_language": "OWL", "nb_classes": 2952, "nb_individuals": 178, "nb_properties": 111, "max_depth": 16, "max_children": 78, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ENVO", "name": "Environment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7682, "download_url": "media/ontologies/ENVO/63/envo.owl", "submission_id": 63, "domain": "environment", "description": "An ontology of environmental systems, components, and processes.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1186/2041-1480-4-43", "title": "The environment ontology: contextualising biological and biomedical entities", "preferred": true }, { "id": "https://doi.org/10.1186/s13326-016-0097-6", "title": "The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation" } ], "products": [ { "id": "envo.owl", "title": "main ENVO OWL release", "ontology_purl": "http://purl.obolibrary.org/obo/envo.owl" }, { "id": "envo.json", "title": "ENVO in obographs JSON format", "ontology_purl": "http://purl.obolibrary.org/obo/envo.json" }, { "id": "envo.obo", "title": "ENVO in OBO Format. May be lossy", "ontology_purl": "http://purl.obolibrary.org/obo/envo.obo" }, { "id": "envo/subsets/envo-basic.obo", "title": "OBO-Basic edition of ENVO", "ontology_purl": "http://purl.obolibrary.org/obo/envo/subsets/envo-basic.obo" }, { "id": "envo/subsets/envoEmpo.owl", "title": "Earth Microbiome Project subset", "ontology_purl": "http://purl.obolibrary.org/obo/envo/subsets/envoEmpo.owl" }, { "id": "envo/subsets/EnvO-Lite-GSC.obo", "title": "GSC Lite subset of ENVO", "homepage": "http://environmentontology.org/downloads", "ontology_purl": "http://purl.obolibrary.org/obo/envo/subsets/EnvO-Lite-GSC.obo" } ], "taxon": null, "date_released": "2025-10-27T12:06:13.998029", "date_created": "2025-10-27T12:06:13.998032", "home_page": "http://environmentontology.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 6906, "nb_individuals": 44, "nb_properties": 170, "max_depth": 35, "max_children": 458, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "38b037655111cae00e5c574f0b4ae079" } }, { "acronym": "DDO", "name": "Diabetes Mellitus Diagnosis Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 317, "download_url": "media/ontologies/DDO/3/ddo.owl", "submission_id": 3, "domain": null, "description": "An ontology for diagnosis of diabetes containing the diabetes related complications, symptoms, drugs, lab tests, etc.", "documentation": null, "publication": "http://link.springer.com/article/10.1186/s40535-016-0021-2?wt_mc=Internal.Event.1.SEM.ArticleAuthorIncrementalIssue", "publications": null, "products": null, "taxon": null, "date_released": "2015-12-20T00:00:00", "date_created": "2015-12-23T11:49:12", "home_page": null, "version": "2015-11-20", "has_ontology_language": "OWL", "nb_classes": 6444, "nb_individuals": 18, "nb_properties": 48, "max_depth": 18, "max_children": 62, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "envo_153", "name": "envo_153", "status": "Classified", "topics": null, "species": null, "submission": { "id": 406, "download_url": "media/ontologies/envo_153/1/envo_153.obo", "submission_id": 1, "domain": null, "description": "envo_153", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-12-17T08:00:00", "date_created": "2012-01-20T19:33:14", "home_page": null, "version": "1.53", "has_ontology_language": "OBO", "nb_classes": 1234, "nb_individuals": 0, "nb_properties": 4, "max_depth": 9, "max_children": 76, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EPIP", "name": "Epigenetic Process", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3306, "download_url": "media/ontologies/EPIP/4/epip.owl", "submission_id": 4, "domain": null, "description": "Biological processes associated with changes in the regulation of gene activity without alteration of genetic structure. Development of this terminology was funded by the National Institute of Child Health and Human Development in support of the Placental Atlas Tool (PAT) with final verification by the PAT External Scientific Panel. This terminology was developed through a combination of resources including existing biomedical ontology resources, such as the Gene Ontology and the National Cancer Institute Thesaurus, web-based content, and epigenetic literature.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-05-01T00:00:00", "date_created": "2020-01-27T19:03:19", "home_page": null, "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 263, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 21, "avg_children": 12, "classifiable": true, "nb_inconsistent": 17, "indexed": true, "md5sum": null } }, { "acronym": "TRAK", "name": "Taxonomy for Rehabilitation of Knee Conditions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 139, "download_url": "media/ontologies/TRAK/5/trak.obo", "submission_id": 5, "domain": null, "description": "TRAK (Taxonomy for RehAbilitation of Knee conditions) is an ontology that formally models information relevant for the rehabilitation of knee conditions. TRAK provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-09-14T00:00:00", "date_created": "2015-09-14T10:39:19", "home_page": "http://www.cs.cf.ac.uk/trak", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 1619, "nb_individuals": 0, "nb_properties": 16, "max_depth": 12, "max_children": 43, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TRANS", "name": "Pathogen Transmission Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8032, "download_url": "media/ontologies/TRANS/6/trans.owl", "submission_id": 6, "domain": "health", "description": "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/19850722", "title": "GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/34755882", "title": "The Human Disease Ontology 2022 update" } ], "products": [ { "id": "trans.owl", "ontology_purl": "http://purl.obolibrary.org/obo/trans.owl" }, { "id": "trans.obo", "ontology_purl": "http://purl.obolibrary.org/obo/trans.obo" } ], "taxon": null, "date_released": "2026-03-16T13:30:58.435298", "date_created": "2026-03-16T13:30:58.435300", "home_page": "https://github.com/DiseaseOntology/PathogenTransmissionOntology", "version": null, "has_ontology_language": "OWL", "nb_classes": 35, "nb_individuals": 0, "nb_properties": 0, "max_depth": 7, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "58102b5ec556ad7dd5e387f40a6bc51b" } }, { "acronym": "TRIAGE", "name": "Nurse triage", "status": "Classified", "topics": null, "species": null, "submission": { "id": 387, "download_url": "media/ontologies/TRIAGE/2/triage.owl", "submission_id": 2, "domain": null, "description": "An ontology showing the process domain of a triage nurse.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-09-24T00:00:00", "date_created": "2015-09-24T01:46:41", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 32, "nb_individuals": 0, "nb_properties": 29, "max_depth": 4, "max_children": 8, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TRON", "name": "Tribolium Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 254, "download_url": "media/ontologies/TRON/2/tron.obo", "submission_id": 2, "domain": null, "description": "TrOn is an ontology about the anatomical structures of the red flour beetle Tribolium castaneum in the developmental stages larva, pupa and adult.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-05-20T07:00:00", "date_created": "2013-05-20T15:57:52", "home_page": "http://ibeetle-base.uni-goettingen.de/ontology/overview.jsf", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 965, "nb_individuals": 0, "nb_properties": 3, "max_depth": 10, "max_children": 22, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "Test Ontology for Non-bio 2", "name": "MyProject", "status": "Classified", "topics": [ "BiologicalTest" ], "species": [ "HumanTest" ], "submission": { "id": 6238, "download_url": "media/ontologies/Test Ontology for Non-bio 2/1/test ontology for non-bio 2.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-06T10:23:05.998320", "date_created": "2023-12-06T10:23:05.998311", "home_page": null, "version": "v1", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 0, "nb_properties": 1, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HW", "name": "wsm", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6973, "download_url": "media/ontologies/HW/2/hw.owl", "submission_id": 2, "domain": null, "description": "wsm", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-10-23T00:00:00", "date_created": "2024-11-01T20:01:07", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 7, "nb_individuals": 118, "nb_properties": 9, "max_depth": 1, "max_children": 7, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d3", "name": "ICF-d3. COMMUNICATION", "status": "Classified", "topics": null, "species": null, "submission": { "id": 77, "download_url": "media/ontologies/ICF-d3/1/icf-d3.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 3: COMMUNICATION\" (d3) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:34:41", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 73, "nb_individuals": 2458, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d5", "name": "ICF-d5. SELF-CARE", "status": "Classified", "topics": null, "species": null, "submission": { "id": 55, "download_url": "media/ontologies/ICF-d5/1/icf-d5.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 5: SELF-CARE\" (d5) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:36:49", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 66, "nb_individuals": 2451, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d6", "name": "ICF-d6. DOMESTIC LIFE", "status": "Classified", "topics": null, "species": null, "submission": { "id": 94, "download_url": "media/ontologies/ICF-d6/1/icf-d6.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 6: DOMESTIC LIFE\" (d6) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:39:28", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 80, "nb_individuals": 2465, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d7", "name": "ICF-d7. INTERPERSONAL INTERACTIONS AND RELATIONSHIPS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 146, "download_url": "media/ontologies/ICF-d7/1/icf-d7.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 7: INTERPERSONAL INTERACTIONS AND RELATIONSHIPS\" (d7) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:41:17", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 79, "nb_individuals": 2464, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IDEM", "name": "IDEM: wInD Energy Models Taxonomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4590, "download_url": "media/ontologies/IDEM/2/idem.skos", "submission_id": 2, "domain": null, "description": "Controlled vocabularies such as taxonomies allow an accurate and controlled approach in describing datasets. One of such controlled vocabulary is Wind Energy Taxonomy of Models. This taxonomy is the result of EERA JP WIND IRPWind Open Data initiative that took place in 2017 in which wind energy experts generated the first version of the taxonomy as an input for defining and structuring wind energy metadata.\r\n\r\nThe report of this work is available at Zenodo: https://www.zenodo.org/record/1199489#.XSD6haeQ3RY\r\n\r\nIn 2018, the taxonomy of topics was improved during the internal project of DTU Wind Energy titled 'FAIR Digitalization': https://www.zenodo.org/record/1493874#.XSD7TaeQ3RY\r\n\r\nIn 2021, the taxonomy was converted into FAIR machine-actionable controlled vocabulary using sheet2rdf. The controlled vocabulary is served to humans and machines using an instace of OntoStack hosted by DTU Wind Energy. sheet2rdf and OntoStack are developed by FAIR Data Collective.\r\n\r\nAdditionally, in 2021, the persistent URL purl.org/idem has been registered for the taxonomy. This allows us to:\r\n\r\nIf there is a needed to move the taxonomy to another domain (currently under data.windenergy.dtu.dk) URLs will be still resolvable and unchanged\r\nUse short URls as PIDs for the taxonomy terms and properties.", "documentation": "https://github.com/DTUWindEnergy/IDEM-taxonomy", "publication": "https://github.com/DTUWindEnergy/IDEM-taxonomy", "publications": null, "products": null, "taxon": null, "date_released": "2021-10-05T00:00:00", "date_created": "2021-10-05T13:54:52", "home_page": "https://github.com/DTUWindEnergy/IDEM-taxonomy", "version": "v0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 38, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IDG_GL", "name": "IDG gene list", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4308, "download_url": "media/ontologies/IDG_GL/5/idg_gl.owl", "submission_id": 5, "domain": null, "description": "List of genes studied under the IDG project", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-03-20T00:00:00", "date_created": "2021-02-23T14:05:11", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 419, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 417, "avg_children": 209, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IDO", "name": "Infectious Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1010, "download_url": "media/ontologies/IDO/12/ido.owl", "submission_id": 12, "domain": "health", "description": "", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ido.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ido.owl" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2017-12-13T01:53:30.558682", "date_created": "2017-12-13T01:53:30.558727", "home_page": "http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 519, "nb_individuals": 20, "nb_properties": 39, "max_depth": 10, "max_children": 173, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "eebcb7b81a5620908e1ccfbdf666f137" } }, { "acronym": "IDO-COVID-19", "name": "The COVID-19 Infectious Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3820, "download_url": "media/ontologies/IDO-COVID-19/2/ido-covid-19.owl", "submission_id": 2, "domain": null, "description": "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.\r\n", "documentation": "https://github.com/infectious-disease-ontology-extensions/ido-covid-19", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-06-05T00:00:00", "date_created": "2020-08-03T07:45:39", "home_page": "https://github.com/infectious-disease-ontology-extensions/ido-covid-19", "version": "8-3-2020", "has_ontology_language": "OWL", "nb_classes": 486, "nb_individuals": 23, "nb_properties": 43, "max_depth": 11, "max_children": 18, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HCPCS-mod", "name": "HCPCS modifiers", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 588, "download_url": "media/ontologies/HCPCS-mod/1/hcpcs-mod.owl", "submission_id": 1, "domain": null, "description": "Modifiers denote that a certain procedure/service has been altered by a particular circumstance, but not changed in its definition, therefore the same code is used and a modifier is added to denote what has been altered.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-09-18T07:00:00", "date_created": "2012-09-18T19:17:54", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 11, "nb_individuals": 7, "nb_properties": 18, "max_depth": 1, "max_children": 10, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TST-VODAN", "name": "VODANA Migrants News Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4483, "download_url": "media/ontologies/TST-VODAN/3/tst-vodan.skos", "submission_id": 3, "domain": null, "description": "migrants ontologies ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-05-02T00:00:00", "date_created": "2021-05-17T14:09:02", "home_page": null, "version": "2.0", "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 164, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TTO", "name": "Teleost taxonomy ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1073, "download_url": "media/ontologies/TTO/44/tto.owl", "submission_id": 44, "domain": "taxonomy", "description": "An ontology covering the taxonomy of teleosts (bony fish)", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "tto.obo", "ontology_purl": "http://purl.obolibrary.org/obo/tto.obo" }, { "id": "tto.owl", "ontology_purl": "http://purl.obolibrary.org/obo/tto.owl" } ], "taxon": { "id": "NCBITaxon:32443", "label": "Teleostei" }, "date_released": "2017-12-13T11:32:29.776038", "date_created": "2017-12-13T11:32:29.776055", "home_page": "https://www.nescent.org/phenoscape/Main_Page", "version": null, "has_ontology_language": "OWL", "nb_classes": 38705, "nb_individuals": 0, "nb_properties": 0, "max_depth": 19, "max_children": 356, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "f920e22b15f85e96de2e1ac882161bf0" } }, { "acronym": "VODANA-UG-OPD", "name": "VODANA-UGANDA-OPD", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4591, "download_url": "media/ontologies/VODANA-UG-OPD/1/vodana-ug-opd.owl", "submission_id": 1, "domain": null, "description": "This is an ontology on the data collected using an Out Patient Register within at the hospitals and facilities in Uganda.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-21T00:00:00", "date_created": "2021-06-21T15:31:49", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 23, "nb_properties": 26, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CEI-10", "name": "CEI-10_Garrahan (test)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1349, "download_url": "media/ontologies/CEI-10/8/cei-10.owl", "submission_id": 8, "domain": null, "description": "Es la Ontologia del Hospital Garrahan de Pediatria", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-03-06T00:00:00", "date_created": "2018-03-22T02:20:47", "home_page": null, "version": "0", "has_ontology_language": "OWL", "nb_classes": 14502, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 35, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WEAR", "name": "WEAR: Wind Energy mAteRials Taxonomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4635, "download_url": "media/ontologies/WEAR/1/wear.skos", "submission_id": 1, "domain": null, "description": "Controlled vocabularies such as taxonomies allow an accurate and controlled approach in describing datasets. One of such controlled vocabulary is Wind Energy Taxonomy of Activities. This taxonomy is the result of EERA JP WIND IRPWind Open Data initiative that took place in 2017 in which wind energy experts generated the first version of the taxonomy as an input for defining and structuring wind energy metadata.\r\n\r\nThe report of this work is available at Zenodo: https://www.zenodo.org/record/1199489#.XSD6haeQ3RY\r\n\r\nIn 2018, the taxonomy of topics was improved during the internal project of DTU Wind Energy titled 'FAIR Digitalization': https://www.zenodo.org/record/1493874#.XSD7TaeQ3RY\r\n\r\nIn 2021, the taxonomy was converted into FAIR machine-actionable controlled vocabulary using sheet2rdf. The controlled vocabulary is served to humans and machines using an instace of OntoStack hosted by DTU Wind Energy. sheet2rdf and OntoStack are developed by FAIR Data Collective.\r\n\r\nAdditionally, in 2021, the persistent URL purl.org/wear has been registered for the taxonomy. This allows us to:\r\n\r\nIf there is a needed to move the taxonomy to another domain (currently under data.windenergy.dtu.dk) URLs will be still resolvable and unchanged\r\nUse short URls as PIDs for the taxonomy terms and properties.", "documentation": "https://github.com/DTUWindEnergy/WEAR-taxonomy", "publication": "https://github.com/DTUWindEnergy/WEAR-taxonomy", "publications": null, "products": null, "taxon": null, "date_released": "2021-10-05T00:00:00", "date_created": "2021-10-05T11:14:41", "home_page": "https://github.com/DTUWindEnergy/WEAR-taxonomy", "version": "v0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 26, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WEAVE", "name": "WEAVE: Wind Energy ActiVitiEs", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5834, "download_url": "media/ontologies/WEAVE/2/weave.skos", "submission_id": 2, "domain": null, "description": "\r\nControlled vocabularies such as taxonomies allow an accurate and controlled approach in describing datasets. One of such controlled vocabulary is Wind Energy Taxonomy of Activities. This taxonomy is the result of EERA JP WIND IRPWind Open Data initiative that took place in 2017 in which wind energy experts generated the first version of the taxonomy as an input for defining and structuring wind energy metadata.\r\n\r\nThe report of this work is available at Zenodo: https://www.zenodo.org/record/1199489#.XSD6haeQ3RY\r\n\r\nIn 2018, the taxonomy of topics was improved during the internal project of DTU Wind Energy titled 'FAIR Digitalization': https://www.zenodo.org/record/1493874#.XSD7TaeQ3RY\r\n\r\nIn 2021, the taxonomy was converted into FAIR machine-actionable controlled vocabulary using sheet2rdf. The controlled vocabulary is served to humans and machines using an instace of OntoStack hosted by DTU Wind Energy. sheet2rdf and OntoStack are developed by FAIR Data Collective.\r\n\r\nAdditionally, in 2021, the persistent URL purl.org/weave has been registered for the taxonomy. This allows us to:\r\n\r\nIf there is a needed to move the taxonomy to another domain (currently under data.windenergy.dtu.dk) URLs will be still resolvable and unchanged\r\nUse short URls as PIDs for the taxonomy terms and properties such as:\r\npurl.org/weave/Measurements", "documentation": "https://github.com/DTUWindEnergy/WEAVE-taxonomy#weave-wind-energy-activities", "publication": "https://github.com/DTUWindEnergy/WEAVE-taxonomy#weave-wind-energy-activities", "publications": null, "products": null, "taxon": null, "date_released": "2023-05-24T01:29:52", "date_created": "2023-05-24T01:29:54", "home_page": "https://github.com/DTUWindEnergy/WEAVE-taxonomy#weave-wind-energy-activities", "version": "v0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 19, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WETAXTOPICS", "name": "NEAT: wiNd Energy tAxonomy of Topics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4648, "download_url": "media/ontologies/WETAXTOPICS/6/wetaxtopics.skos", "submission_id": 6, "domain": null, "description": "Controlled vocabularies such as taxonomies allow an accurate and controlled approach in describing datasets. One of such controlled vocabulary is Wind Energy Taxonomy of Topics. This taxonomy is the result of EERA JP WIND IRPWind Open Data initiative that took place in 2017 in which wind energy experts generated the first version of the taxonomy as an input for defining and structuring wind energy metadata.\r\n\r\nThe report of this work is available at Zenodo: https://www.zenodo.org/record/1199489#.XSD6haeQ3RY\r\n\r\nIn 2018, the taxonomy of topics was improved during the internal project of DTU Wind Energy titled 'FAIR Digitalization': https://www.zenodo.org/record/1493874#.XSD7TaeQ3RY\r\n\r\nIn 2020, the definition of taxonomy terms were added and the taxonomy was converted into FAIR machine-actionable controlled vocabulary using sheet2rdf. The controlled vocabulary is served to humans and machines using an instace of OntoStack hosted by DTU Wind Energy.", "documentation": "https://github.com/DTUWindEnergy/NEAT-taxonomy", "publication": "https://www.zenodo.org/record/1199489#.XSD6haeQ3RY ", "publications": null, "products": null, "taxon": null, "date_released": "2021-10-15T01:15:29", "date_created": "2021-10-15T01:15:30", "home_page": "http://purl.org/neat/", "version": "v0.1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 70, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WHOFRE", "name": "WHOART, French Translation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 314, "download_url": "media/ontologies/WHOFRE/9/whofre.umls", "submission_id": 9, "domain": null, "description": "WHOART, French Translation", "documentation": "http://www.who.int/", "publication": "http://www.who.int/", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:46", "date_created": "2017-02-06T21:26:46", "home_page": "http://www.who.int/", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 1827, "nb_individuals": 0, "nb_properties": 1, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WIKIPATHWAYS", "name": "WikiPathways", "status": "Classified", "topics": null, "species": null, "submission": { "id": 389, "download_url": "media/ontologies/WIKIPATHWAYS/225/wikipathways.owl", "submission_id": 225, "domain": null, "description": "The WP ontology for WikiPathways.", "documentation": "http://www.wikipathways.org/index.php/Help:Contents", "publication": "http://wikipathways.tumblr.com/", "publications": null, "products": null, "taxon": null, "date_released": "2017-10-18T00:00:00", "date_created": "2017-10-19T00:16:02", "home_page": "http://www.wikipathways.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 32, "nb_individuals": 1, "nb_properties": 21, "max_depth": 2, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WSIO", "name": "Web-Service Interaction Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 374, "download_url": "media/ontologies/WSIO/4/wsio.obo", "submission_id": 4, "domain": null, "description": "Web Service Interaction Ontology (WSIO) enables automated interaction with more complex Web services that are typical for example within life sciences. WSIO is however independent of the application domain and relevant for both SOAP and REST Web services, and for batch execution engines in general. If the interaction scenario with a Web service is nontrivial (and incorporates session handling), annotation with WSIO concepts will enable automatic generation of client programs, scripts, or interactive applications with a graphical user interface. WSIO also enables automation of different ways of data transfer and data un-/compression or en-/decoding. We strongly discourage providers from developing complex interaction and data-transfer/compression scenarios, however when needed, WSIO may enable smooth automated interaction with them. Future versions will support more interaction scenarios. WSIO aims to serve also as a means to standardise the complex interaction scenarios primarily within both SOAP and REST Web services, and secondarily to apply also to batch execution infrastructure in general.", "documentation": "http://wsio.org", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-06-20T01:03:00", "date_created": "2014-06-19T16:59:47", "home_page": "http://wsio.org", "version": "beta2", "has_ontology_language": "OBO", "nb_classes": 31, "nb_individuals": 0, "nb_properties": 11, "max_depth": 2, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIODIVTHES", "name": "Biodiversity Thesaurus", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5762, "download_url": "media/ontologies/BIODIVTHES/1/biodivthes.skos", "submission_id": 1, "domain": null, "description": "This bilingual thesaurus organizes the key concepts of biodiversity sciences, in their basic and applied ecological components. It uses polyhierarchy and includes 818 reciprocal associative relationships. The 1654 French and English descriptors (designating 827 concepts) are enriched with a large number of synonyms (1860) and hidden variants (7020) in both languages. Concepts are grouped into 82 collections, by semantic categories, thematic fields and EBV classes (Essential Biodiversity Variables). Definitions are given with their sources. This resource is aligned with the international thesauri AGROVOC, GEMET (GEneral Multilingual Environmental Thesaurus) and EnvThes (Environmental Thesaurus), as well as with the ontology ENVO (Environment Ontology).", "documentation": "https://hal.archives-ouvertes.fr/hal-02907484", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-04-07T00:00:00", "date_created": "2023-04-07T11:08:59", "home_page": "https://www.loterre.fr/skosmos/BLH/en/", "version": "2.1", "has_ontology_language": "SKOS", "nb_classes": 4, "nb_individuals": 915, "nb_properties": 2, "max_depth": 1, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "goslim_plant", "name": "Plant slim", "status": "Classified", "topics": null, "species": null, "submission": { "id": 512, "download_url": "media/ontologies/goslim_plant/1/goslim_plant.obo", "submission_id": 1, "domain": null, "description": "Developed by The Arabidopsis Information Resource (http://www.arabidopsis.org/).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-09-22T07:00:00", "date_created": "2009-09-27T17:40:25", "home_page": null, "version": "1.738 (CVS version)", "has_ontology_language": "OBO", "nb_classes": 122, "nb_individuals": 0, "nb_properties": 5, "max_depth": 4, "max_children": 23, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "goslim_pombe", "name": "Schizosaccharomyces pombe slim", "status": "Classified", "topics": null, "species": null, "submission": { "id": 117, "download_url": "media/ontologies/goslim_pombe/1/goslim_pombe.obo", "submission_id": 1, "domain": null, "description": "Developed by Val Wood. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-09-22T07:00:00", "date_created": "2009-09-27T17:55:29", "home_page": null, "version": "1.6 (CVS version)", "has_ontology_language": "OBO", "nb_classes": 72, "nb_individuals": 0, "nb_properties": 5, "max_depth": 3, "max_children": 32, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HANCESTRO", "name": "Human Ancestry Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7663, "download_url": "media/ontologies/HANCESTRO/21/hancestro.owl", "submission_id": 21, "domain": "organisms", "description": "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/29448949", "title": "A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog" } ], "products": [ { "id": "hancestro.owl", "title": "HANCESTRO", "description": "The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/hancestro.owl" }, { "id": "hancestro-base.owl", "title": "HANCESTRO Base", "description": "Base version of HANCESTRO", "ontology_purl": "http://purl.obolibrary.org/obo/hancestro-base.owl" } ], "taxon": null, "date_released": "2025-10-20T13:06:21.514453", "date_created": "2025-10-20T13:06:21.514458", "home_page": "https://ebispot.github.io/hancestro/", "version": null, "has_ontology_language": "OWL", "nb_classes": 1310, "nb_individuals": 19, "nb_properties": 20, "max_depth": 10, "max_children": 240, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "2267b172138df9e4548d659aba3da3d8" } }, { "acronym": "HAO", "name": "Hymenoptera Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5842, "download_url": "media/ontologies/HAO/28/hao.owl", "submission_id": 28, "domain": "anatomy and development", "description": "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/21209921", "title": "A gross anatomy ontology for hymenoptera" } ], "products": [ { "id": "hao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hao.owl" }, { "id": "hao.obo", "ontology_purl": "http://purl.obolibrary.org/obo/hao.obo" }, { "id": "hao/depictions.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hao/depictions.owl" } ], "taxon": { "id": "NCBITaxon:7399", "label": "Hymenoptera" }, "date_released": "2023-06-05T13:11:27.550293", "date_created": "2023-06-05T13:11:27.550311", "home_page": "http://hymao.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 2597, "nb_individuals": 2764, "nb_properties": 6, "max_depth": 11, "max_children": 334, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "302144f889b85ea944be838b661a1241" } }, { "acronym": "HAROREADO", "name": "Halocynthia roretzi Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 173, "download_url": "media/ontologies/HAROREADO/2/haroreado.obo", "submission_id": 2, "domain": null, "description": " The first ontology describing the anatomy and the development of Halocynthia roretzi. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-06T00:00:00", "date_created": "2016-08-04T19:19:34", "home_page": "http://www.aniseed.cnrs.fr/", "version": null, "has_ontology_language": "OBO", "nb_classes": 856, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 355, "avg_children": 85, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HASSET", "name": "Humanities And Social Science Electronic Thesaurus", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1947, "download_url": "media/ontologies/HASSET/1/hasset.skos", "submission_id": 1, "domain": null, "description": "The Humanities And Social Science Electronic Thesaurus (HASSET) is the leading British English thesaurus for the social sciences.\r\n\r\nHASSET has been compiled at the UK Data Archive for over thirty years. It was developed initially as an information retrieval tool to access data deposited in the UK Data Archive. Its scope has now expanded to cover the collections held by the UK Data Service.\r\n\r\nCopyright University of Essex. All rights reserved. \r\nYou may view the thesaurus online. \r\nPrior to downloading and/or using the full version of HASSET, SKOS-HASSET or any related product, a licence agreement must be completed between the user and the University of Essex.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-04-14T00:00:00", "date_created": "2017-04-27T11:55:28", "home_page": "https://hasset.ukdataservice.ac.uk/", "version": "2.00", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 7610, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HCM-D", "name": "Home Cage Monitoring definition", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7594, "download_url": "media/ontologies/HCM-D/2/hcm-d.owl", "submission_id": 2, "domain": null, "description": "From COST-TEATIME (https://www.cost-teatime.org/)\r\nLICENSE CC-BY-NC 4.0", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-09T00:00:00", "date_created": "2025-09-09T00:00:00", "home_page": null, "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 18, "nb_individuals": 0, "nb_properties": 16, "max_depth": 2, "max_children": 13, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HCPCS", "name": "Healthcare Common Procedure Coding System", "status": "Classified", "topics": null, "species": null, "submission": { "id": 331, "download_url": "media/ontologies/HCPCS/9/hcpcs.umls", "submission_id": 9, "domain": null, "description": "Healthcare Common Procedure Coding System", "documentation": "http://cms.hhs.gov", "publication": "http://cms.hhs.gov", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:59", "date_created": "2017-02-06T21:25:59", "home_page": "http://cms.hhs.gov", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 5946, "nb_individuals": 0, "nb_properties": 20, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COVID-19", "name": "COVID-19 Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7548, "download_url": "media/ontologies/COVID-19/4/covid-19.owl", "submission_id": 4, "domain": null, "description": "The COVID-19 ontology covers the role of molecular and cellular entities in virus-host-interactions, in the virus life cycle, as well as a wide spectrum of medical and epidemiological concepts linked to COVID-19.", "documentation": null, "publication": "['http://www.example.com']", "publications": null, "products": null, "taxon": null, "date_released": "2020-05-14T00:00:00", "date_created": "2021-02-25T16:53:42", "home_page": null, "version": "Version Release: 1.0.0", "has_ontology_language": "OWL", "nb_classes": 2270, "nb_individuals": 6, "nb_properties": 9, "max_depth": 16, "max_children": 246, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COVID19", "name": "COVID-19 Surveillance Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4237, "download_url": "media/ontologies/COVID19/3/covid19.owl", "submission_id": 3, "domain": null, "description": "The COVID-19 Surveillance Ontology is an application ontology used to support SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) surveillance in primary care. The ontology facilitates monitoring of COVID-19 cases and related respiratory conditions using data from multiple brands of computerised medical record systems.", "documentation": null, "publication": "https://publichealth.jmir.org/2020/4/e21434/", "publications": null, "products": null, "taxon": null, "date_released": "2020-08-05T00:00:00", "date_created": "2021-01-28T13:39:11", "home_page": "https://orchid.phc.ox.ac.uk/index.php/cov-19/", "version": "V1.0", "has_ontology_language": "OWL", "nb_classes": 32, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 11, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HDMPONTO", "name": "HierarchicalDMProcessOnto", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4140, "download_url": "media/ontologies/HDMPONTO/1/hdmponto.owl", "submission_id": 1, "domain": null, "description": "A Hierarchical Data Mining Process Ontology, by combined OntoKDD and DMWF.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-12-18T00:00:00", "date_created": "2020-12-18T20:52:24", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 377, "nb_individuals": 4, "nb_properties": 51, "max_depth": 7, "max_children": 27, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HDS", "name": "Humanitarian Data Space", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7813, "download_url": "media/ontologies/HDS/1/hds.owl", "submission_id": 1, "domain": null, "description": "The humanitarian data space vocabulary describes entities and relationships relevant for humanitarian applications, specifically focusing on events related to sexual violence, human trafficking and refugee protection. The aim of this vocabulary is to report on situations and incidents that are taking place on the ground into the humanitarian data space.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-11T00:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 49, "nb_individuals": 0, "nb_properties": 18, "max_depth": 1, "max_children": 35, "avg_children": 35, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HECON", "name": "HECON: Health Condition Evolution Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5051, "download_url": "media/ontologies/HECON/1/hecon.owl", "submission_id": 1, "domain": null, "description": "Health Condition Evolution Ontology (HECON), is a formal model representation of the evolution of medical events over time.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-04-22T00:00:00", "date_created": "2022-04-22T01:59:19", "home_page": "http://kmi.open.ac.uk/conrad/HECON", "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 16, "nb_individuals": 21, "nb_properties": 10, "max_depth": 3, "max_children": 7, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HED", "name": "Hierarchical Event Descriptors", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6735, "download_url": "media/ontologies/HED/1/hed.owl", "submission_id": 1, "domain": null, "description": "HED (Hierarchical Event Descriptors) is a standardized vocabulary for describing what happens during experiments and a framework for mapping these terms and other metadata onto the experimental timeline to enable analysis. HED is a subtag system organized by the top-level categories: Event, Agent, Action, Item, Property, and Relation. Users create HED annotations as comma-separated, parenthesized lists of terms. See https://www.hed-resource.org for documentation, tutorials and other resources.\r\n\r\nRecently we have created an ontology representation of the HED vocabulary (HED schema) to provide a better mechanism for linking the HED terms to terms from other ontologies and to provide better provenance information. The HED tags as well as auxiliary information such as types of units and types of values are represented as classes. The HED schema attributes are represented either as DataProperty or ObjectProperty depending on their range. Some additional attributes that are not inherited are represented as AnnotationProperty. HED is the standard used for event annotation in BIDS (Brain Imaging Data Structure) a standard for storing neuroimaging repository and is used by datasets on several repositories such as openNeuro and Nemar.", "documentation": "https://hed-specification.readthedocs.io/en/latest/08_HED_ontology.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-07-03T00:00:00", "date_created": "2024-07-03T22:00:00", "home_page": "www.hedtags.org", "version": "releases/2024-06-10", "has_ontology_language": "OWL", "nb_classes": 1358, "nb_individuals": 0, "nb_properties": 14, "max_depth": 10, "max_children": 40, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HIFM", "name": "HIFM Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7919, "download_url": "media/ontologies/HIFM/1/hifm.owl", "submission_id": 1, "domain": null, "description": "An ontology for describing brand-name drugs.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2014-04-01T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 0, "nb_properties": 1, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HMODEX", "name": "HealthModEx", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7310, "download_url": "media/ontologies/HMODEX/2/hmodex.owl", "submission_id": 2, "domain": null, "description": "Ontologies for describing health economic models", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-03-12T00:00:00", "date_created": "2025-04-17T06:02:38", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 14088, "nb_individuals": 0, "nb_properties": 0, "max_depth": 13, "max_children": 87, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HOOM_V3", "name": "HOOM_New_Model", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7811, "download_url": "media/ontologies/HOOM_V3/1/hoom_v3.owl", "submission_id": 1, "domain": null, "description": "Orphanet provides phenotypic annotations of the rare diseases in the Orphanet nomenclature using the Human Phenotype Ontology (HPO). HOOM is a module that qualifies the annotation between a clinical entity and phenotypic abnormalities according to a frequency and by integrating the notion of diagnostic criterion. \r\n\r\nThis new model of HOOM, used between ORDO and HPO is no more based on OBAN modelisation. It provides ORDO diseases concept annotated with HPO terms in a lightweight new dataset.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-09T15:12:56", "date_created": "2025-12-15T00:00:00", "home_page": null, "version": "3.0", "has_ontology_language": "OWL", "nb_classes": 4352, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 4343, "avg_children": 1450, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HOSP", "name": "Hospital Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7920, "download_url": "media/ontologies/HOSP/1/hosp.owl", "submission_id": 1, "domain": null, "description": "A RDF Schema that defines concepts and relationships used for Hospital data.", "documentation": "http://vocab.data.gov/hosp.html", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2015-09-30T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "v2015-09-30", "has_ontology_language": "OWL", "nb_classes": 6, "nb_individuals": 2, "nb_properties": 2, "max_depth": 2, "max_children": 5, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HPO", "name": "Hypertension-Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6233, "download_url": "media/ontologies/HPO/1/hpo.owl", "submission_id": 1, "domain": null, "description": "The Hypertension Ontology, developed using the Protege tool, serves as a comprehensive knowledge framework for representing and organizing information related to hypertensive disorders. This ontology is designed to capture various aspects of hypertension, including its types, causes, and associated risks, with the aim of providing valuable insights for healthcare professionals, researchers, and policymakers. Leveraging the power of Protege, the ontology employs the OWL (Web Ontology Language) format to define classes, properties, and relationships, ensuring semantic clarity and interoperability. The taxonomy within the ontology encompasses a wide range of hypertensive conditions, allowing for detailed classification and representation. The ontology facilitates queries and exploration of hypertensive data through the use of the DL Query module in Protege, offering a practical tool for evaluating its usefulness. To enhance accessibility, the ontology is made available for download, enabling seamless integration into existing healthcare information systems. Its development involved a rigorous review of scientific literature and consideration of established methodologies, ensuring its alignment with best practices in ontology engineering. This Hypertension Ontology aims to contribute to the advancement of hypertension research, clinical practice, and healthcare decision-making.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-02T00:00:00", "date_created": "2023-12-02T14:25:03", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 114, "nb_individuals": 170, "nb_properties": 5, "max_depth": 4, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DECIDE", "name": "DECIDE ONTOLOGY", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7286, "download_url": "media/ontologies/DECIDE/2/decide.owl", "submission_id": 2, "domain": null, "description": "DECIDE ontology provides a semantic framework for describing and integrating knowledge related to both aquaculture and terrestrial livestock species.\r\nThis ontology was developed as part of the DECIDE EU 2020 project to support data integration, classification, and knowledge modeling in the domain of aquaculture. It provides a structured, upper-level framework for representing species (such as salmon, cattle, poultry, and pigs), production systems, measurement events, and health-related information including clinical signs, diagnostics, and interventions. \r\n\r\nThe ontology is designed to be modular and extensible, and it can be adapted or reused for terrestrial livestock species such as cattle, poultry, and pigs.\r\n \r\nseeAlso: LivestockHealthOntology\r\nhttps://bioportal.bioontology.org/ontologies/LHO \r\n\r\nIts purpose is to facilitate harmonized data representation for improved disease surveillance, risk assessment, and decision support across livestock sectors.", "documentation": "https://github.com/decide-project-eu/ontology-decide", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-03T00:00:00", "date_created": "2025-04-04T13:42:44", "home_page": "https://github.com/decide-project-eu", "version": "Version 1.2", "has_ontology_language": "OWL", "nb_classes": 23, "nb_individuals": 25, "nb_properties": 14, "max_depth": 4, "max_children": 15, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DMDSONT", "name": "Diabetes Mellitus Diagnosis and Support Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5382, "download_url": "media/ontologies/DMDSONT/1/dmdsont.owl", "submission_id": 1, "domain": null, "description": "Diabetes Mellitus Diagnosis and Support Ontology (DMDSOnt) is created using OWL 2.0 according to the directions given in the IDF’s guidelines (2022). As required and directed in the IDF’s guidelines, DMDSOnt contains concepts and relations about the signs and symptoms observed in DM, active lifestyle expected from patients, genetic conditions of patients, physical activities to be followed, laboratory tests, other factors/criteria in the diagnosis of DM, and supportive treatment recommendations for the proper management of DM risk.\r\n\r\nIDF:\tAmerican Diabetes Association Professional Practice Committee. (2022). 2.Classification and diagnosis of diabetes: standards of medical care in diabetes—2022. Diabetes Care, 45, (Supplement_1), S17-S38, DOI: /10.2337/dc22-S002, http://diabetesjournals.org/care/article-pdf/45/Supplement_1/S17/637547/dc22s002.pdf. ", "documentation": "Contact us from duygu.celik@emu.edu.tr", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-27T00:00:00", "date_created": "2022-09-27T08:39:37", "home_page": null, "version": "ver 1.0", "has_ontology_language": "OWL", "nb_classes": 8, "nb_individuals": 71, "nb_properties": 7, "max_depth": 1, "max_children": 8, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DMTO", "name": "Diabetes Mellitus Treatment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 113, "download_url": "media/ontologies/DMTO/5/dmto.owl", "submission_id": 5, "domain": null, "description": "DMTO is an OWL 2 ontology for creating customized treatment plans for diabetic patients. The ontology is based on BFO and OGMS. In addition, it extends the DDO ontology by adding the treatment classes and axioms to the existing diagnosis part. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-05-10T00:00:00", "date_created": "2017-05-10T22:33:48", "home_page": null, "version": "2015-11-20", "has_ontology_language": "OWL", "nb_classes": 10700, "nb_individuals": 63, "nb_properties": 315, "max_depth": 19, "max_children": 91, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FGNHNS", "name": "FoodGroupNHNS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7257, "download_url": "media/ontologies/FGNHNS/68/fgnhns.owl", "submission_id": 68, "domain": null, "description": "Ontology of food groups of the National Health and Nutrition Examination Survey issued by the Ministry of Health, Labour and Welfare. Foods are divided into major, medium, and minor categories, and the English and Japanese names of foods belonging to the minor categories are noted. Food names listed in the Food Composition Table of the Ministry of Education, Culture, Sports, Science and Technology and the Japanese Standard Commodity Classification of the Ministry of Internal Affairs and Communications are also stored and associated with each food name.\r\n\r\nFoodcomp information has been temporarily removed.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-03-01T00:00:00", "date_created": "2025-03-21T07:16:25", "home_page": null, "version": "0.300", "has_ontology_language": "OWL", "nb_classes": 3896, "nb_individuals": 3904, "nb_properties": 0, "max_depth": 5, "max_children": 2115, "avg_children": 25, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FIT_BIT", "name": "Fitbit Vocabularies ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6620, "download_url": "media/ontologies/FIT_BIT/1/fit_bit.skos", "submission_id": 1, "domain": null, "description": "This contains vocabulary information for Fitbit data for a single source user from the online API", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-05-27T00:00:00", "date_created": "2024-05-27T20:02:09", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 39, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FIX", "name": "Physico-chemical methods and properties", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3534, "download_url": "media/ontologies/FIX/119/fix.owl", "submission_id": 119, "domain": null, "description": "An ontology of physico-chemical methods and properties.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "fix.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fix.owl" }, { "id": "fix.obo", "ontology_purl": "http://purl.obolibrary.org/obo/fix.obo" } ], "taxon": null, "date_released": "2020-04-13T18:02:48.973319", "date_created": "2020-04-13T18:02:48.973373", "home_page": "", "version": null, "has_ontology_language": "OWL", "nb_classes": 1163, "nb_individuals": 0, "nb_properties": 5, "max_depth": 12, "max_children": 45, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "e237a5f03e3a5ffd881f72fc12490199" } }, { "acronym": "FLDLB3", "name": "FIELDLAB3_2023_2", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6192, "download_url": "media/ontologies/FLDLB3/4/fldlb3.skos", "submission_id": 4, "domain": null, "description": "This is the final ontology of fieldlab 3 check 3", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-03T00:00:00", "date_created": "2023-11-14T11:22:51", "home_page": "https://github.com/Rens-byte/Fieldlab3-2/tree/main", "version": "3", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 11, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FMA", "name": "Foundational Model of Anatomy Ontology (subset)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3540, "download_url": "media/ontologies/FMA/139/fma.owl", "submission_id": 139, "domain": "anatomy", "description": "This is currently a slimmed down version of FMA", "documentation": null, "publication": null, "publications": [ { "id": "http://www.ncbi.nlm.nih.gov/pubmed/18688289" }, { "id": "http://www.ncbi.nlm.nih.gov/pubmed/18360535" }, { "id": "http://www.ncbi.nlm.nih.gov/pubmed/16779026" } ], "products": [ { "id": "fma.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fma.owl" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2020-04-20T12:24:04.774597", "date_created": "2020-04-20T12:24:04.774617", "home_page": "http://si.washington.edu/projects/fma", "version": null, "has_ontology_language": "OWL", "nb_classes": 78977, "nb_individuals": 0, "nb_properties": 7, "max_depth": 20, "max_children": 218, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "0ffa47fce111b6b02a357a1aa59e6539" } }, { "acronym": "FOUR-M_VOCABS", "name": "AGE-FRIENDLY 4M VOCABULARY", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6609, "download_url": "media/ontologies/FOUR-M_VOCABS/1/four-m_vocabs.skos", "submission_id": 1, "domain": null, "description": "Vocabulary for the 4M nursing framework", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-05-17T00:00:00", "date_created": "2024-05-17T15:57:36", "home_page": null, "version": "1", "has_ontology_language": "SKOS", "nb_classes": 396, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 134, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "G4-DSIP", "name": "Group 4-Data Science in Practice", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6324, "download_url": "media/ontologies/G4-DSIP/6/g4-dsip.skos", "submission_id": 6, "domain": null, "description": "Group 4 Data Science in Practice", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-01-09T00:00:00", "date_created": "2024-01-09T17:42:06", "home_page": null, "version": "1.0.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 27, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GALEN", "name": "Galen Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 419, "download_url": "media/ontologies/GALEN/1/galen.owl", "submission_id": 1, "domain": null, "description": "A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2007-01-09T08:00:00", "date_created": "2007-01-16T21:51:57", "home_page": "http://www.co-ode.org/galen/", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 23141, "nb_individuals": 0, "nb_properties": 950, "max_depth": 24, "max_children": 1492, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DRON", "name": "The Drug Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8008, "download_url": "media/ontologies/DRON/35/dron.owl", "submission_id": 35, "domain": "health", "description": "An ontology to support comparative effectiveness researchers studying claims data.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1186/s13326-017-0121-5", "title": "Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request" } ], "products": [ { "id": "dron.owl", "ontology_purl": "http://purl.obolibrary.org/obo/dron.owl" } ], "taxon": null, "date_released": "2026-03-09T12:05:52.442445", "date_created": "2026-03-09T12:05:52.442452", "home_page": "https://github.com/ufbmi/dron", "version": null, "has_ontology_language": "OWL", "nb_classes": 778649, "nb_individuals": 27, "nb_properties": 123, "max_depth": 20, "max_children": 661570, "avg_children": 20, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "b4a63b3d276ec795bfb4bac96d5572f7" } }, { "acronym": "FAST-TITLE", "name": "FAST (Faceted Application of Subject Terminology) Title Facet", "status": "Classified", "topics": null, "species": null, "submission": { "id": 262, "download_url": "media/ontologies/FAST-TITLE/1/fast-title.skos", "submission_id": 1, "domain": null, "description": "FAST (Faceted Application of Subject Terminology) is an enumerative, faceted subject heading schema derived from the Library of Congress Subject Headings (LCSH). The purpose of adapting the LCSH with a simplified syntax to create FAST is to retain the very rich vocabulary of LCSH while making the schema easier to understand, control, apply, and use.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-14T00:00:00", "date_created": "2017-09-06T00:04:12", "home_page": "http://www.oclc.org/research/themes/data-science/fast/download.html", "version": null, "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 65800, "nb_properties": 0, "max_depth": 0, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FNS-H", "name": "FNS-Harmony", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 6163, "download_url": "media/ontologies/FNS-H/2/fns-h.owl", "submission_id": 2, "domain": null, "description": "Application ontology for the FNS-Cloud project ontology PURL: https://purl.org/fns-h", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-02T19:00:45", "date_created": "2023-11-02T19:01:08", "home_page": "https://github.com/panovp/FNS-Harmony", "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 31464, "nb_individuals": 6997, "nb_properties": 20, "max_depth": 33, "max_children": 1277, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GWAS_EFO_SKOS", "name": "GWAS view", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 119, "download_url": "media/ontologies/GWAS_EFO_SKOS/1/gwas_efo_skos.owl", "submission_id": 1, "domain": null, "description": "This is an experimental view that uses the Simple Knowledge Organisation System (SKOS) to represent a view over EFO terms. These EFO terms are a subset of terms that are being used to annotate data for the Genome Wide Association Studies (GWAS) curators. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-02-03T08:00:00", "date_created": "2012-02-03T15:55:28", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 19787, "nb_individuals": 365, "nb_properties": 76, "max_depth": 14, "max_children": 1813, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GSSO", "name": "Gender, Sex, and Sexual Orientation (GSSO) ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5342, "download_url": "media/ontologies/GSSO/73/gsso.owl", "submission_id": 73, "domain": "organisms", "description": "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "gsso.owl", "ontology_purl": "http://purl.obolibrary.org/obo/gsso.owl" }, { "id": "gsso.obo", "ontology_purl": "http://purl.obolibrary.org/obo/gsso.obo" }, { "id": "gsso.json", "ontology_purl": "http://purl.obolibrary.org/obo/gsso.json" } ], "taxon": null, "date_released": "2022-09-12T13:34:51.687042", "date_created": "2022-09-12T13:34:51.687068", "home_page": "https://gsso.research.cchmc.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 13192, "nb_individuals": 3004, "nb_properties": 0, "max_depth": 41, "max_children": 152, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "443b35f49fc002ba205f49031a04a1c8" } }, { "acronym": "GYRISULCIH", "name": "NeuroMorpho.Org Cortical Gyri & Sulci", "status": "Classified", "topics": null, "species": null, "submission": { "id": 557, "download_url": "media/ontologies/GYRISULCIH/3/gyrisulcih.owl", "submission_id": 3, "domain": null, "description": "A hierarchy of Neocortex gyri and sulci in Primates.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-03-31T01:04:29", "date_created": "2017-03-31T01:04:29", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 22, "nb_individuals": 27, "nb_properties": 0, "max_depth": 1, "max_children": 21, "avg_children": 11, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INFECTION_TRANS", "name": "Infection Transmission Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5250, "download_url": "media/ontologies/INFECTION_TRANS/2/infection_trans.owl", "submission_id": 2, "domain": null, "description": "The Infection Transmission Ontology is developed in order to make transmission data reusable and interoperable. \r\nThe ontology captures every step of analysing data from the transmission process, especially for quantification of trans-\r\nmission parameters. It is applicable to animal and human (hospital) data from both experimental and observational stud-\r\nies.\r\n\r\nThe lack of a common terminology in the infection transmission experiments leads to repetition of costly experiments. By developing a domain ontology we can reuse and combine the transmission data, which leads to the improvement of an estimation of transmission parameters and prediction of outcomes of yet unobserved situations.", "documentation": "https://utrechtuniversity.github.io/summer-fair/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-07-13T00:00:00", "date_created": "2022-07-20T10:15:24", "home_page": "https://raw.githubusercontent.com/UtrechtUniversity/summer-fair/master/src/create_ontology/map_ontology/infection_trans.owl#", "version": "1.0.2", "has_ontology_language": "OWL", "nb_classes": 22, "nb_individuals": 11, "nb_properties": 21, "max_depth": 2, "max_children": 17, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INJURYTYPES", "name": "Injury Types", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5548, "download_url": "media/ontologies/INJURYTYPES/1/injurytypes.skos", "submission_id": 1, "domain": null, "description": "This class is associated with the different injury types.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-07T00:00:00", "date_created": "2022-12-07T20:09:23", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 9, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INM-NPI", "name": "Interventionnelle Non Médicamenteuse (INM)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 285, "download_url": "media/ontologies/INM-NPI/3/inm-npi.owl", "submission_id": 3, "domain": null, "description": "Interventionnelle Non Médicamenteuse, Non-Pharmacological Interventions", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-02-16T00:00:00", "date_created": "2016-07-16T15:11:58", "home_page": "http://www.cepsplatform.eu", "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 160, "nb_individuals": 0, "nb_properties": 2, "max_depth": 4, "max_children": 30, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INO", "name": "Interaction Network Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4978, "download_url": "media/ontologies/INO/32/ino.owl", "submission_id": 32, "domain": null, "description": "An ontology of interactions and interaction networks", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ino.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ino.owl" } ], "taxon": null, "date_released": "2022-03-28T12:21:05.529499", "date_created": "2022-03-28T12:21:05.529510", "home_page": "https://github.com/INO-ontology/ino", "version": null, "has_ontology_language": "OWL", "nb_classes": 328, "nb_individuals": 0, "nb_properties": 59, "max_depth": 12, "max_children": 43, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7d35b715a7e2412851c6cd63dd6082c7" } }, { "acronym": "INSECTH", "name": "insectH", "status": "Classified", "topics": null, "species": null, "submission": { "id": 872, "download_url": "media/ontologies/INSECTH/4/insecth.owl", "submission_id": 4, "domain": null, "description": "NeuroMorpho.Org insect brain regions ontology is compiled to create data annotation standard for depositing insect data. Currently at v6.2, NeuroMorpho.Org hosts over 17k neuronal reconstructions mostly from the fly. The insect ontology follows the standard nomenclature of the insect brain (Ito et al., 2013) and the virtualfly.org. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T02:10:09", "date_created": "2017-11-28T02:10:09", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 119, "nb_individuals": 130, "nb_properties": 0, "max_depth": 8, "max_children": 39, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GALLONT", "name": "Plant Gall Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6553, "download_url": "media/ontologies/GALLONT/5/gallont.owl", "submission_id": 5, "domain": "phenotype", "description": "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "gallont.owl", "ontology_purl": "http://purl.obolibrary.org/obo/gallont.owl" }, { "id": "gallont.json", "ontology_purl": "http://purl.obolibrary.org/obo/gallont.json" }, { "id": "gallont.obo", "ontology_purl": "http://purl.obolibrary.org/obo/gallont.obo" } ], "taxon": null, "date_released": "2024-04-22T12:24:21.860585", "date_created": "2024-04-22T12:24:21.860588", "home_page": "https://adeans.github.io/gallont/", "version": null, "has_ontology_language": "OWL", "nb_classes": 395, "nb_individuals": 13, "nb_properties": 132, "max_depth": 24, "max_children": 17, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "300ef4d6611aa3ae68242b16200cfa67" } }, { "acronym": "goslim_yeast", "name": "Yeast slim", "status": "Classified", "topics": null, "species": null, "submission": { "id": 399, "download_url": "media/ontologies/goslim_yeast/1/goslim_yeast.obo", "submission_id": 1, "domain": null, "description": "Developed by Saccharomyces Genome Database", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-09-22T07:00:00", "date_created": "2009-09-27T18:02:38", "home_page": null, "version": "1.729 (CVS version)", "has_ontology_language": "OBO", "nb_classes": 118, "nb_individuals": 0, "nb_properties": 5, "max_depth": 2, "max_children": 41, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GRO", "name": "Gene Regulation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 356, "download_url": "media/ontologies/GRO/5/gro.owl", "submission_id": 5, "domain": null, "description": "The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes.", "documentation": "http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-10-10T01:04:37", "date_created": "2016-01-06T21:29:49", "home_page": "http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html", "version": "0.5", "has_ontology_language": "OWL", "nb_classes": 507, "nb_individuals": 4, "nb_properties": 33, "max_depth": 11, "max_children": 21, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DSIP_FL_7", "name": "DSIP_FL_7", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6167, "download_url": "media/ontologies/DSIP_FL_7/1/dsip_fl_7.owl", "submission_id": 1, "domain": null, "description": "The Human Trafficking Vocabulary is an essential resource for researchers and analysts working with raw interview data gathered from refugees affected by human trafficking. It offers a standardized framework for categorizing and understanding various aspects of human trafficking incidents. The vocabulary includes terms for describing the nationality and location of human traffickers, the number of times traffickers are mentioned by independent sources, the type of observation obtained (first-hand or second-hand), and more. This vocabulary was created as part of Data Science in Practice Fieldlab-7, with guidance from Kai Smiths. It is continuously updated to reflect new insights and developments in the field of human trafficking research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-02T00:00:00", "date_created": "2023-11-02T21:37:42", "home_page": null, "version": "v1", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 24, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DOCCC", "name": "Diagnosis Ontology of Clinical Care Classification", "status": "Classified", "topics": null, "species": null, "submission": { "id": 594, "download_url": "media/ontologies/DOCCC/3/doccc.owl", "submission_id": 3, "domain": null, "description": "Diagnosis Ontology of Clinical Care Classification (CCC) ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-10-04T00:00:00", "date_created": "2013-10-04T02:42:45", "home_page": null, "version": "20131004", "has_ontology_language": "OWL", "nb_classes": 204, "nb_individuals": 0, "nb_properties": 1, "max_depth": 4, "max_children": 17, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DOID", "name": "Human Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8081, "download_url": "media/ontologies/DOID/705/doid.owl", "submission_id": 705, "domain": "health", "description": "An ontology for describing the classification of human diseases organized by etiology.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/25348409", "title": "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/34755882", "title": "The Human Disease Ontology 2022 update" } ], "products": [ { "id": "doid.owl", "title": "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies.", "ontology_purl": "http://purl.obolibrary.org/obo/doid.owl" }, { "id": "doid.obo", "title": "Disease Ontology, OBO format. This file omits the equivalent axioms.", "ontology_purl": "http://purl.obolibrary.org/obo/doid.obo" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2026-04-06T12:43:21.804467", "date_created": "2026-04-06T12:43:21.804472", "home_page": "https://disease-ontology.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 19403, "nb_individuals": 0, "nb_properties": 47, "max_depth": 34, "max_children": 2529, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "518839256e2ee08ee4639fc6eb3f0c96" } }, { "acronym": "DOIDSH", "name": "Diseases Ontology - Shrinked version", "status": "Classified", "topics": [], "species": [], "submission": { "id": 1857, "download_url": "media/ontologies/DOIDSH/3/doidsh.owl", "submission_id": 3, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-09-25T08:28:52.527555", "date_created": "2018-09-25T08:28:52.527521", "home_page": null, "version": "0.3", "has_ontology_language": "OWL", "nb_classes": 1326, "nb_individuals": 0, "nb_properties": 6, "max_depth": 10, "max_children": 109, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DPO", "name": "Drosophila Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8082, "download_url": "media/ontologies/DPO/43/dpo.owl", "submission_id": 43, "domain": "phenotype", "description": "An ontology of commonly encountered and/or high level Drosophila phenotypes.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24138933", "title": "The Drosophila phenotype ontology." } ], "products": [ { "id": "dpo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/dpo.owl" }, { "id": "dpo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/dpo.obo" }, { "id": "dpo.json", "ontology_purl": "http://purl.obolibrary.org/obo/dpo.json" } ], "taxon": { "id": "NCBITaxon:7227", "label": "Drosophila" }, "date_released": "2026-04-06T12:47:22.638664", "date_created": "2026-04-06T12:47:22.638670", "home_page": "http://purl.obolibrary.org/obo/fbcv", "version": null, "has_ontology_language": "OWL", "nb_classes": 1553, "nb_individuals": 44, "nb_properties": 121, "max_depth": 16, "max_children": 95, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "f93e49f913afb9c1d18fc157df9f3160" } }, { "acronym": "DRANPTO", "name": "Dementia-Related Agitation Non-Pharmacological Treatment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3664, "download_url": "media/ontologies/DRANPTO/1/dranpto.owl", "submission_id": 1, "domain": null, "description": "DRANPTO is developed for representing the domain knowledge specific to non-pharmacological intervention for agitation in dementia, particularly for the long-term care setting.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-06-06T00:00:00", "date_created": "2020-06-06T23:41:06", "home_page": null, "version": "Version 1.0", "has_ontology_language": "OWL", "nb_classes": 569, "nb_individuals": 0, "nb_properties": 48, "max_depth": 10, "max_children": 30, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DREAMDNPTO", "name": "Dementia-Related Emotional And Mood Disturbance Non-Pharmacological Treatment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5146, "download_url": "media/ontologies/DREAMDNPTO/1/dreamdnpto.owl", "submission_id": 1, "domain": null, "description": "DREAMDNPTO represents the domain knowledge specific to the non-pharmacological treatment of emotional and mood disturbances (e.g., depression and anxiety in dementia) in people with dementia living in the long-term care setting.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-06-12T00:00:00", "date_created": "2022-06-13T03:21:40", "home_page": null, "version": "v1.0", "has_ontology_language": "OWL", "nb_classes": 1258, "nb_individuals": 0, "nb_properties": 70, "max_depth": 9, "max_children": 50, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HAMIDEHSGH", "name": "Inherited Retinal Dystrophy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2746, "download_url": "media/ontologies/HAMIDEHSGH/1/hamidehsgh.owl", "submission_id": 1, "domain": null, "description": "Inherited retinal dystrophy (IRD) as one of the rare ocular diseases encompasses different types of hereditary retinal degenerations appearing by involvement of the different layers of the posterior ocular segment. In respect of the importance of the classification systems regarding the recorded history of biologic and natural sciences, there is no classification regarding the IRD diagnoses. Therefore, we aimed to present a novel classification in this regard.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-07-10T00:00:00", "date_created": "2019-07-11T01:50:19", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 407, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 76, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HEIO", "name": "Regional Healthcare System Interoperability and Information Exchange Measurement Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 17, "download_url": "media/ontologies/HEIO/17/heio.owl", "submission_id": 17, "domain": null, "description": "The purpose of this ontology is to develop a model for regional healthcare system interoperability and information exchange quantification (measured by the electronic health information exchange (eHIE) indicator). The eHIE is hypothesized as a leading measure of regional healthcare system integration.\r\nA publication associated with this ontology is currently under review. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-09T00:00:00", "date_created": "2015-04-17T14:27:05", "home_page": null, "version": "Version 1.15", "has_ontology_language": "OWL", "nb_classes": 125, "nb_individuals": 1605, "nb_properties": 47, "max_depth": 3, "max_children": 36, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HENEGEO", "name": "Head and Neck Cancer - Clinical and Gene Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6141, "download_url": "media/ontologies/HENEGEO/1/henegeo.owl", "submission_id": 1, "domain": null, "description": "HeNeGeO (Head and Neck Cancer - Clinical and Gene Ontology) presents a data model that encompasses both clinical and genomic aspects of Head and Neck Cancer (HNC) across every stage of the disease, covering prognosis, treatment and follow-up. This ontology builds upon the foundation laid by HENECON (Head and Neck Cancer Ontology) and has been significantly expanded with a focus on information pertaining to cancer recurrence, alongside a comprehensive list of genes that offer valuable insights throughout the entire head and neck cancer progression. To enhance clarity, novel medical terms have been thoughtfully annotated with their respective semantic meanings. This comprehensive update includes the incorporation of 29,770 genes, featuring essential details such as NCBI GeneID (EntrezID), gene symbol, gene name, gene alias, and the HGNC ID. The development of this ontology underwent rigorous review and validation by experts in both clinical and genomic domains.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-23T00:00:00", "date_created": "2023-10-23T13:56:34", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 29996, "nb_individuals": 130, "nb_properties": 0, "max_depth": 4, "max_children": 29770, "avg_children": 468, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HFO", "name": "Heart Failure Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 396, "download_url": "media/ontologies/HFO/1/hfo.owl", "submission_id": 1, "domain": null, "description": "Heart failure ontology is an attempt to define heart-failure-relevant information including the causes and risk factors, signs and symptoms, diagnostic tests and results, and treatment. ", "documentation": null, "publication": "http://www.sciencedirect.com/science/article/pii/S0933365716300689", "publications": null, "products": null, "taxon": null, "date_released": "2015-12-08T00:00:00", "date_created": "2015-12-08T00:20:25", "home_page": null, "version": "version 1.0", "has_ontology_language": "OWL", "nb_classes": 1652, "nb_individuals": 0, "nb_properties": 0, "max_depth": 8, "max_children": 467, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HGNC", "name": "HUGO Gene Nomenclature", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8002, "download_url": "media/ontologies/HGNC/8/hgnc.owl", "submission_id": 8, "domain": null, "description": "Human Genome Organisation (HUGO) Gene Nomenclature Committee at the European Bioinformatics Institute approves a gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database.", "documentation": "http://www.genenames.org/", "publication": "['http://www.genenames.org/']", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-28T02:06:56", "date_created": "2026-02-27T00:00:00", "home_page": "http://www.genenames.org/", "version": "dev", "has_ontology_language": "OWL", "nb_classes": 47034, "nb_individuals": 0, "nb_properties": 0, "max_depth": 7, "max_children": 44924, "avg_children": 59, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HGNC-NR", "name": "HGNC New Releases Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6070, "download_url": "media/ontologies/HGNC-NR/8/hgnc-nr.owl", "submission_id": 8, "domain": null, "description": "HUGO Gene Nomenclature Committee Ontology with recurring uploads", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-09-18T00:00:00", "date_created": "2023-09-19T00:05:43", "home_page": null, "version": "2023-09-18", "has_ontology_language": "OWL", "nb_classes": 48867, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 19270, "avg_children": 6981, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HHEAR", "name": "Human Health Exposure Analysis Resource", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8020, "download_url": "media/ontologies/HHEAR/20/hhear.owl", "submission_id": 20, "domain": null, "description": "NOTE 3/5/2026: We are currently working with BioPortal to address issues with ingestion that are causing error classes to appear within the ontology. While this is investigated, you should download and view Version 1.12.1 in your own ontology browser. If you are interested in using the HHEAR ontology for a source of standard terminology, please view the HHEAR Value Sets available on BioPortal.\r\n---\r\nThe Human Health Exposure Analysis Resource (HHEAR) measures exposures that cover the breadth of the “exposome,” which encompasses all environmental exposures including chemical, physical, and biological stressors, as well as lifestyle and social environments, from conception through adulthood. The HHEAR Ontology was developed as an application ontology to represent data collected within the HHEAR program and support data pooling efforts across studies. , The Human Health Exposure Analysis Resource (HHEAR).", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-09T00:00:00", "date_created": "2026-03-09T00:00:00", "home_page": "https://hhearprogram.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 3691, "nb_individuals": 3399, "nb_properties": 64, "max_depth": 11, "max_children": 200, "avg_children": 3, "classifiable": true, "nb_inconsistent": 3, "indexed": true, "md5sum": null } }, { "acronym": "HIO", "name": "Hearing Impairment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3067, "download_url": "media/ontologies/HIO/3/hio.owl", "submission_id": 3, "domain": null, "description": "The Hearing Impairment Ontology (HIO) is a common controlled hearing impairment (HI) vocabulary, which is expected to enhance collaborative research. This ontology is currently the most comprehensive and standardized human- and machine-readable resource that unambiguously defines HI concepts and terminology for researchers, patients and clinicians in order to help process, reuse and re-apply existing HI knowledge in biomedical research and health-care systems. In the context of big data analytics, this ontology may facilitate a retrospective data harmonization and contribute to mapping HI datasets to functional knowledge to enable the subsequent HI research translation into clinical applications and policy guidelines. The HIO will allow researchers, clinicians and patients to readily access standardized HI-related knowledge in a single location and promote HI data integration, interoperability and sharing, including epidemiological, socio-environmental, biomedical, genetic and phenotypic datasets.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-11-01T01:10:08", "date_created": "2019-11-01T01:10:10", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 496, "nb_individuals": 0, "nb_properties": 46, "max_depth": 8, "max_children": 26, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HIPLAYERH", "name": "NeuroMorpho.Org Hippocampus layers", "status": "Classified", "topics": null, "species": null, "submission": { "id": 709, "download_url": "media/ontologies/HIPLAYERH/2/hiplayerh.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of layers in the Hippocampus.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:38:20", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 15, "nb_individuals": 16, "nb_properties": 0, "max_depth": 2, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HRA", "name": "Human Reference Atlas", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7821, "download_url": "media/ontologies/HRA/11/hra.owl", "submission_id": 11, "domain": null, "description": "The Human Reference Atlas (HRA) is a comprehensive, high-resolution, three-dimensional atlas of all the cells in the healthy human body. The Human Reference Atlas provides standard terminologies and data structures for describing specimens, biological structures, and spatial positions linked to existing ontologies., The graph representation of the Human Reference Atlas (HRA) dataset.", "documentation": "https://lod.humanatlas.io/collection/hra/v2.3", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-11T00:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "v2.3", "has_ontology_language": "OWL", "nb_classes": 11953, "nb_individuals": 175435, "nb_properties": 13, "max_depth": 24, "max_children": 1690, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "JFO", "name": "Japanese Food Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7605, "download_url": "media/ontologies/JFO/5/jfo.owl", "submission_id": 5, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-19T00:00:00", "date_created": "2025-09-19T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 6492, "nb_individuals": 3904, "nb_properties": 0, "max_depth": 5, "max_children": 2541, "avg_children": 42, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HP_O", "name": "Hypersensitivity pneumonitis ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1673, "download_url": "media/ontologies/HP_O/1/hp_o.owl", "submission_id": 1, "domain": null, "description": "Hypersensitivity Pneumonitis Ontology involves the domain of knowledge of 1. diseases caused by organic dusts exposure including hypersensitivity pneumonitis as well as 2. organic dusts.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-07-17T00:00:00", "date_created": "2018-07-17T08:06:43", "home_page": "https://hypontology.herokuapp.com/", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 199, "nb_individuals": 0, "nb_properties": 7, "max_depth": 8, "max_children": 38, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD11-BODYSYSTEM", "name": "Body System Terms from ICD11", "status": "Classified", "topics": null, "species": null, "submission": { "id": 422, "download_url": "media/ontologies/ICD11-BODYSYSTEM/1/icd11-bodysystem.owl", "submission_id": 1, "domain": null, "description": "This is a set of body-system terms used in the ICD 11 revision", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-04-15T07:00:00", "date_created": "2010-04-15T21:54:02", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 30, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 15, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INTVEETYPE", "name": "Interviewee Type", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5549, "download_url": "media/ontologies/INTVEETYPE/1/intveetype.skos", "submission_id": 1, "domain": null, "description": "This class refers to the different types of Interviewees.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-07T00:00:00", "date_created": "2022-12-07T19:53:27", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 6, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LTER-CV", "name": "LTER Controlled Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7441, "download_url": "media/ontologies/LTER-CV/1/lter-cv.skos", "submission_id": 1, "domain": null, "description": "Duplicate of https://vocab.lternet.edu/vocab/vocab", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-06-25T00:00:00", "date_created": "2025-06-25T00:00:00", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 703, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MCO4MCRE", "name": "Multiplex Classification Ontology for the MultiCaRe Experiment", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6892, "download_url": "media/ontologies/MCO4MCRE/1/mco4mcre.owl", "submission_id": 1, "domain": null, "description": "Ontology used for one of the experiments from the Multiplex Classification Framework (paper under review). This ontology is based on the set of classes from the MultiCaRe dataset. The MultiCaRe dataset is a multimodal case report dataset containing medical images that were programmatically labeled based on the content of their captions (Nievas Offidani & Delrieux, 2024). Images may have more than one label, making this a multi-label classification task. For this experiment, we selected a subset of 31 classes, including “endoscopy”, “colonoscopy”, and “mri”. The original ontology is flat, and it does not contain any logical constraints among the classes. Data Article: Nievas Offidani, M. A., & Delrieux, C. A. (2024). Dataset of clinical cases, images, image labels and captions from open access case reports from PubMed Central (1990–2023). Data in Brief, 52, 110008. https://doi.org/10.1016/j.dib.2023.110008", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-09-07T00:00:00", "date_created": "2024-09-07T16:57:40", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 36, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 13, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FOOD_ONTOLOGY", "name": "Food Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 455, "download_url": "media/ontologies/FOOD_ONTOLOGY/1/food_ontology.owl", "submission_id": 1, "domain": null, "description": "We built food ontology primarily to support comparative effectiveness researchers studying food components or ingredients data. Food Ontology Knowledgebase (FOKB) is developed in English and Turkish that contains details of food ingredients such as their codes (e-codex or codex numbers) and also side effects of them such as allergy. Initially, the first stage of the research project was funded in 2013 by TUBITAK (The Scientific and Technological Research Council of Turkey- http://www.tubitak.gov.tr/en) – 1512 Progressive Entrepreneurship Support Program (Project No: 2120357, “Semantic-based Personal Safe Food Consumption System for Allergic Individuals via Smart Devices”) by the Semantica Trd. Ltd. Co (http://www.semantica.com.tr/en). The initial proposal of the first stage project is presented in Hindawi Publishing Corporation http://www.hindawi.com- The Scientific World Journal with the title “FoodWiki: Ontology-driven Mobile Safe Food Consumption System”. After that, another project as an extension of the first stage project was funded again by TUBITAK toward the end of 2014. It is titled “Artificial Intelligence-based Mobile System for Conscious Food Consumption through Ontology” and recorded with the project number 3140417 in cooperation with Semantica Internet and Software Services Trd. Ltd. Co. and Acıbadem Hospitals Group in consultation with Asst. Prof. Dr. Duygu Çelik. Copyrights of the Food Ontology Knowledgebase (FOKB) and FoodWiki system are reserved by Semantica Trd. Ltd. Co and Acıbadem Hospitals Group (http://www.acibademinternational.com/).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-24T00:00:00", "date_created": "2015-04-24T08:48:26", "home_page": null, "version": "v1.0", "has_ontology_language": "OWL", "nb_classes": 62, "nb_individuals": 1740, "nb_properties": 46, "max_depth": 4, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DS", "name": "Data Science", "status": "Unknown", "topics": [], "species": [], "submission": null }, { "acronym": "MCR_TX", "name": "MultiCaRe Taxonomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7069, "download_url": "media/ontologies/MCR_TX/2/mcr_tx.owl", "submission_id": 2, "domain": null, "description": "The MultiCaRe Taxonomy contains the class structure used for medical image classification in the MultiCaRe dataset (v2).", "documentation": "https://github.com/mauro-nievoff/MCR2-WIP/blob/main/taxonomy_files/MultiCaRe%20Taxonomy%20Documentation.pdf", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-11-18T00:00:00", "date_created": "2024-12-13T19:06:45", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 163, "nb_individuals": 0, "nb_properties": 0, "max_depth": 8, "max_children": 22, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MEDICALINFO", "name": "mymedicalinformation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7097, "download_url": "media/ontologies/MEDICALINFO/2/medicalinfo.owl", "submission_id": 2, "domain": null, "description": "this ontology is for my thesis research demo", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-01-04T00:00:00", "date_created": "2025-01-04T18:44:04", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 6, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MELO", "name": "Melanoma Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4597, "download_url": "media/ontologies/MELO/2/melo.owl", "submission_id": 2, "domain": null, "description": "Ontology of melanoma disease, composed of terms of disease, drug, symptoms, molecular abnormality，anatomical structure, diagnosis, treatment and relationships between them.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-05-28T00:00:00", "date_created": "2021-05-28T08:12:33", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 528, "nb_individuals": 18, "nb_properties": 34, "max_depth": 10, "max_children": 16, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MEPO", "name": "Mapping of Epilepsy Ontologies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4292, "download_url": "media/ontologies/MEPO/6/mepo.owl", "submission_id": 6, "domain": null, "description": "The Mapping of Epilepsy Ontologies (MEPO) provides owl:sameAs relationships of similar concepts for the ontologies EpSO, ESSO, EPILONT, EPISEM, and FENICS. Two concepts are considered similar if they share the same concept name or the same synonym. Additional synonyms for each of the concepts are generated using the Snowball stemming algorithm. The software implementation is available on github within the Maven project snoke in the module snoke.ontology: https://github.com/bernd-mueller/snoke/tree/master/snoke.ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-01-15T00:00:00", "date_created": "2021-02-19T09:04:05", "home_page": "https://www.zbmed.de/", "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 5687, "nb_individuals": 747, "nb_properties": 0, "max_depth": 1, "max_children": 5686, "avg_children": 5686, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "gr", "name": "gr_ontology", "status": "Classified", "topics": [], "species": [], "submission": { "id": 5276, "download_url": "media/ontologies/gr/1/gr.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-08-12T09:40:35.502091", "date_created": "2022-08-12T09:40:35.502078", "home_page": null, "version": "juhiygh", "has_ontology_language": "OWL", "nb_classes": 105, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 12, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "H1_NMOABA_1_0", "name": "NeuroMorpho.Org Allen Brain Atlas ontology v.1.0", "status": "Classified", "topics": null, "species": null, "submission": { "id": 510, "download_url": "media/ontologies/H1_NMOABA_1_0/1/h1_nmoaba_1_0.owl", "submission_id": 1, "domain": null, "description": "Light version of the Allen Brain Atlas ontology that is customized for the NeuroMorpho.Org brain regions. The ontology includes NeuroMorpho.Org rodent data instantiated for direct matching classes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-04-24T07:00:00", "date_created": "2011-04-24T23:42:51", "home_page": "www.neuromorpho.org", "version": "1", "has_ontology_language": "OWL", "nb_classes": 654, "nb_individuals": 45, "nb_properties": 0, "max_depth": 9, "max_children": 17, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "H1_NMOABA_2_0", "name": "NeuroMorpho.Org Allen Brain Atlas ontology v.2.0", "status": "Classified", "topics": null, "species": null, "submission": { "id": 272, "download_url": "media/ontologies/H1_NMOABA_2_0/1/h1_nmoaba_2_0.owl", "submission_id": 1, "domain": null, "description": "Light version of the Allen Brain Atlas ontology that is customized for the NeuroMorpho.Org brain regions. This ontology instantiates 90% of rodent brain regions from NeuroMorpho.Org v5.2.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-08-31T07:00:00", "date_created": "2011-08-31T15:21:48", "home_page": "www.neuromorpho.org", "version": "2", "has_ontology_language": "OWL", "nb_classes": 661, "nb_individuals": 61, "nb_properties": 0, "max_depth": 9, "max_children": 17, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "H2_HIPClassicRegions", "name": "NeuroMorpho.Org hippocampal regions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 377, "download_url": "media/ontologies/H2_HIPClassicRegions/2/h2_hipclassicregions.owl", "submission_id": 2, "domain": null, "description": "A classical regional partition hierarchy of cornu ammonis of rodent hippocampus.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-09-16T07:00:00", "date_created": "2011-09-16T16:24:33", "home_page": "www.neuromorpho.org", "version": "2", "has_ontology_language": "OWL", "nb_classes": 8, "nb_individuals": 7, "nb_properties": 0, "max_depth": 3, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "H3_HIPSeptotemporalAxis", "name": "NeuroMorpho.Org longitudinal hippocampal regions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 506, "download_url": "media/ontologies/H3_HIPSeptotemporalAxis/2/h3_hipseptotemporalaxis.owl", "submission_id": 2, "domain": null, "description": "longitudinal partitioning of rodent hippocampus", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-09-16T07:00:00", "date_created": "2011-09-16T16:27:00", "home_page": "www.neuromorpho.org", "version": "2", "has_ontology_language": "OWL", "nb_classes": 6, "nb_individuals": 2, "nb_properties": 0, "max_depth": 3, "max_children": 2, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HAAURAADO", "name": "Halocynthia aurantium Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 358, "download_url": "media/ontologies/HAAURAADO/2/haauraado.obo", "submission_id": 2, "domain": null, "description": "The first ontology describing the anatomy and the development of Halocynthia aurantium. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-06T00:00:00", "date_created": "2016-08-04T19:01:10", "home_page": "http://www.aniseed.cnrs.fr/", "version": null, "has_ontology_language": "OBO", "nb_classes": 856, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 355, "avg_children": 85, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HAKMSVU", "name": "Hakm", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2523, "download_url": "media/ontologies/HAKMSVU/2/hakmsvu.owl", "submission_id": 2, "domain": null, "description": "OntologyForSvu", "documentation": "http://SemanticWeb.org/Hakm", "publication": "http://SemanticWeb.org/Hakm", "publications": null, "products": null, "taxon": null, "date_released": "2018-11-15T00:00:00", "date_created": "2018-11-15T11:58:20", "home_page": "http://SemanticWeb.org/Hakm", "version": "Latest", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 59, "nb_properties": 4, "max_depth": 3, "max_children": 4, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HELIFIT", "name": "HeLiFit-Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5857, "download_url": "media/ontologies/HELIFIT/1/helifit.owl", "submission_id": 1, "domain": null, "description": "This an ontology for healthcare.", "documentation": "chrome-extension://efaidnbmnnnibpcajpcglclefindmkaj/http://wrap.warwick.ac.uk/162747/1/WRAP-toward-symbolic-AI-approach-WHO-ACSM-physical-activity-sedentary-behavior-guidelines-Pecchia-2022.pdf", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-13T00:00:00", "date_created": "2022-12-13T11:48:34", "home_page": null, "version": "", "has_ontology_language": "OWL", "nb_classes": 487, "nb_individuals": 152, "nb_properties": 30, "max_depth": 9, "max_children": 111, "avg_children": 11, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTODM-CORE", "name": "Ontology of Core Data Mining Entities", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 942, "download_url": "media/ontologies/ONTODM-CORE/8/ontodm-core.owl", "submission_id": 8, "domain": null, "description": "OntoDM is a generic ontology for the domain of data mining. The ontology includes the information processing processes that occur in the domain of data mining, participants in the processes and their specifications. OntoDM is highly transferable and extendable due to its adherence to accepted standards, and compliance with existing ontology resources. The generality in scope allows wide number of applications of the ontology, such as semantic annotation of data mining scenarios, ontology based support for QSARs, etc.", "documentation": "www.ontodm.com", "publication": "http://link.springer.com/article/10.1007/s10618-014-0363-0#", "publications": null, "products": null, "taxon": null, "date_released": "2017-12-09T06:25:36", "date_created": "2017-12-09T06:25:36", "home_page": "www.ontodm.com", "version": "1.0R", "has_ontology_language": "OWL", "nb_classes": 838, "nb_individuals": 196, "nb_properties": 78, "max_depth": 18, "max_children": 36, "avg_children": 2, "classifiable": true, "nb_inconsistent": 2, "indexed": true, "md5sum": null } }, { "acronym": "HORD", "name": "Holistic Ontology of Rare Diseases", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 365, "download_url": "media/ontologies/HORD/1/hord.owl", "submission_id": 1, "domain": null, "description": "This ontology describes the bio-psico-social state of a person of rare diseses in a holistic way. It considers several contents such as disease, psychological, social, environmental state of the person.", "documentation": "https://drive.google.com/file/d/0B2unmdSxW85dTXdVUl81TmlRRGc/view", "publication": "https://sites.google.com/site/laiasubirats/publications", "publications": null, "products": null, "taxon": null, "date_released": "2017-08-02T00:00:00", "date_created": "2017-08-02T10:32:49", "home_page": "https://sites.google.com/site/laiasubirats", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 29656, "nb_individuals": 5199, "nb_properties": 346, "max_depth": 11, "max_children": 3795, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MEO", "name": "Metagenome and Microbes Environmental Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 169, "download_url": "media/ontologies/MEO/9/meo.owl", "submission_id": 9, "domain": null, "description": "An Ontology for organismal habitats (especially focused on microbes)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-09-08T00:00:00", "date_created": "2017-09-10T04:42:12", "home_page": "http://microbedb.jp", "version": "0.9", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "BIOBIPON", "name": "Biological part of Bacterial interlocked Process ONtology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 270, "download_url": "media/ontologies/BIOBIPON/2/biobipon.owl", "submission_id": 2, "domain": null, "description": "bioBiPON (a sub-ontology of BiPON) aims at organizing the systemic description of\r\nbiological information", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-05T00:00:00", "date_created": "2017-04-05T08:49:26", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 1556, "nb_individuals": 767, "nb_properties": 29, "max_depth": 15, "max_children": 25, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BiositemapIM", "name": "Biositemap Information Model", "status": "Classified", "topics": null, "species": null, "submission": { "id": 234, "download_url": "media/ontologies/BiositemapIM/2/biositemapim.owl", "submission_id": 2, "domain": null, "description": "This view represents a subset of the BRO containing the classes that define the biositemap information model (IM).", "documentation": "http://www.biositemaps.org/formatDescription.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-17T07:00:00", "date_created": "2010-06-28T05:02:32", "home_page": "http://www.biositemaps.org/", "version": "3.1", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 1, "nb_properties": 45, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIPOM", "name": "Biological interlocked Process Ontology for metabolism", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3573, "download_url": "media/ontologies/BIPOM/3/bipom.owl", "submission_id": 3, "domain": null, "description": "BiPOm is an ontology based on systemic representation of metabolic processes. BiPOm is an ontological model carrying the main biological processes and molecular roles/functions at a high level of genericity where the usual annotated resources are treated as instances.\r\nBiPOm, 1) contains biological knowledge as instances and 2) uses automatic reasoning through Semantic Web Rule Language (SWRL) in order to automatically infer, formalize and refine properties of molecules.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-04-15T00:00:00", "date_created": "2020-04-21T16:43:25", "home_page": null, "version": "Core", "has_ontology_language": "OWL", "nb_classes": 142, "nb_individuals": 5, "nb_properties": 28, "max_depth": 7, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIPOM-CC-INF", "name": "BiPOm inferences for Calvin cycle", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3580, "download_url": "media/ontologies/BIPOM-CC-INF/3/bipom-cc-inf.owl", "submission_id": 3, "domain": null, "description": "BiPOm instantiated with metabolic reactions and post-translational modifications for the Calvin cycle followed by SWRL rules based reasoning.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-04-18T00:00:00", "date_created": "2020-04-21T16:46:48", "home_page": null, "version": "alpha", "has_ontology_language": "OWL", "nb_classes": 142, "nb_individuals": 289, "nb_properties": 28, "max_depth": 7, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIPOM-CC-INST", "name": "BiPOm Calvin cycle instantiation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3581, "download_url": "media/ontologies/BIPOM-CC-INST/3/bipom-cc-inst.owl", "submission_id": 3, "domain": null, "description": "BiPOm instantiated with metabolic reactions and post-translational modifications for the Calvin cycle.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-04-18T00:00:00", "date_created": "2020-04-21T16:48:01", "home_page": null, "version": "alpha", "has_ontology_language": "OWL", "nb_classes": 142, "nb_individuals": 289, "nb_properties": 29, "max_depth": 7, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIPOM-ECMET-INF", "name": "BiPOm E-Coli metabolism instantiation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3576, "download_url": "media/ontologies/BIPOM-ECMET-INF/2/bipom-ecmet-inf.owl", "submission_id": 2, "domain": null, "description": "BiPOm instantiated with metabolic reactions and post-translational modifications for the metabolism of Escherichia coli.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-04-18T00:00:00", "date_created": "2020-04-21T16:50:18", "home_page": null, "version": "alpha", "has_ontology_language": "OWL", "nb_classes": 142, "nb_individuals": 10116, "nb_properties": 28, "max_depth": 7, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIPOM-ECMET-INFF", "name": "BiPOm inferences for E-Coli metabolism", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3578, "download_url": "media/ontologies/BIPOM-ECMET-INFF/2/bipom-ecmet-inff.owl", "submission_id": 2, "domain": null, "description": "BiPOm instantiated with metabolic reactions and post-translational modifications for the metabolism of Escherichia coli followed by SWRL rules based reasoning.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-04-18T00:00:00", "date_created": "2020-04-21T17:10:17", "home_page": null, "version": "alpha", "has_ontology_language": "OWL", "nb_classes": 142, "nb_individuals": 10116, "nb_properties": 28, "max_depth": 7, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIPON", "name": "Bacterial interlocked Process ONtology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 798, "download_url": "media/ontologies/BIPON/3/bipon.owl", "submission_id": 3, "domain": null, "description": "BiPON is an ontology permitting a multi-scale systemic representation of bacterial cellular\r\nprocesses and the coupling to their mathematical models. BiPON is further composed of two sub-\r\nontologies, bioBiPON and modelBiPON. bioBiPON aims at organizing the systemic description of\r\nbiological information while modelBiPON aims at describing the mathematical models (including\r\nparameters) associated to each biological process.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-09T00:00:00", "date_created": "2017-11-09T07:04:45", "home_page": null, "version": "2017-11-08-bis", "has_ontology_language": "OWL", "nb_classes": 1746, "nb_individuals": 767, "nb_properties": 30, "max_depth": 15, "max_children": 25, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HOM-UCSF_UCareDispostion", "name": "Health Ontology Mapper - UCSF_UCareDischargeDisposition", "status": "Classified", "topics": null, "species": null, "submission": { "id": 516, "download_url": "media/ontologies/HOM-UCSF_UCareDispostion/1/hom-ucsf_ucaredispostion.owl", "submission_id": 1, "domain": null, "description": "All Disposition/Discharge Codes and Values listed in the UCSF- UCare patient source data", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-11-21T08:00:00", "date_created": "2010-11-22T02:33:52", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 150, "nb_properties": 2, "max_depth": 0, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HOOM", "name": "HPO - ORDO Ontological Module", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7820, "download_url": "media/ontologies/HOOM/13/hoom.owl", "submission_id": 13, "domain": null, "description": "Orphanet provides phenotypic annotations of the rare diseases in the Orphanet nomenclature using the Human Phenotype Ontology (HPO). HOOM is a module that qualifies the annotation between a clinical entity and phenotypic abnormalities according to a frequency and by integrating the notion of diagnostic criterion. In ORDO a clinical entity is either a group of rare disorders, a rare disorder or a subtype of disorder. The phenomes branch of ORDO has been refactored as a logical import of HPO, and the HPO-ORDO phenotype disease-annotations have been provided in a series of triples in OBAN format in which associations, frequency and provenance are modeled.\r\n\r\nHOOM is provided as an OWL (Ontologies Web Languages) file, using OBAN, the Orphanet Rare Disease Ontology (ORDO), and HPO ontological models.\r\n\r\nHOOM provides extra possibilities for researchers, pharmaceutical companies and others wishing to co-analyse rare and common disease phenotype associations, or re-use the integrated ontologies in genomic variants repositories or match-making tools. ", "documentation": "https://www.orphadata.com/hoom/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2018-03-08T12:00:00", "date_created": "2025-12-10T00:00:00", "home_page": "https://www.orphadata.com", "version": "2.5", "has_ontology_language": "OWL", "nb_classes": 134910, "nb_individuals": 1, "nb_properties": 12, "max_depth": 3, "max_children": 116046, "avg_children": 13491, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MICRONT", "name": "microntology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7951, "download_url": "media/ontologies/MICRONT/1/micront.owl", "submission_id": 1, "domain": null, "description": "microntology encompasses (in v1.0) a controlled vocabulary of 148 crosslinked terms that fall into five broad habitat categories (terrestrial, aquatic, aerial, host-associated and anthropogenic environments) and additional categories that describe broad physicochemical properties, morphology, human host properties, animal host captivity status, and miscellaneous informative features such as (chemical) contamination or ancient (paleontological) sample provenance. MICRONT is designed as a pragmatic lightweight complement to existing detailed ontologies like ENVO, UBERON or GOLD; MICRONT terms are crosslinked to these where appropriate. Its purpose is a fast, automatable annotation of (meta)genomic microbial samples with browsable informative tags.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-05T00:00:00", "date_created": "2026-02-05T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 160, "nb_individuals": 0, "nb_properties": 1, "max_depth": 5, "max_children": 16, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MINI-FAST-1", "name": "mini fast test", "status": "Classified", "topics": null, "species": null, "submission": { "id": 765, "download_url": "media/ontologies/MINI-FAST-1/1/mini-fast-1.skos", "submission_id": 1, "domain": null, "description": "Test of SKOS vocab to see if skos/core#Concept is required", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-02T00:00:00", "date_created": "2017-10-03T03:37:27", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 2, "nb_properties": 0, "max_depth": 0, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIOLINK", "name": "Biolink Model", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8111, "download_url": "media/ontologies/BIOLINK/76/biolink.owl", "submission_id": 76, "domain": null, "description": "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations", "documentation": "https://github.com/biolink/biolink-model", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-04-14T01:00:30", "date_created": "2026-04-13T00:00:00", "home_page": "https://biolink.github.io/biolink-model/", "version": "4.3.9", "has_ontology_language": "OWL", "nb_classes": 667, "nb_individuals": 25, "nb_properties": 486, "max_depth": 8, "max_children": 135, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HRAVS", "name": "HuBMAP Research Attributes Value Set", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8113, "download_url": "media/ontologies/HRAVS/185/hravs.skos", "submission_id": 185, "domain": null, "description": "A collection of curated and standardized values used by the HuBMAP (Human BioMolecular Atlas Program) and SenNet (Cellular Senescence Network) metadata records to ensure uniformity in the description of samples and single-cell data produced by the consortium.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-04-13T00:00:00", "date_created": "2026-04-13T00:00:00", "home_page": null, "version": "2.16.3", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 706, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HIVO004", "name": "HIVOntologymain.owl", "status": "Classified", "topics": null, "species": null, "submission": { "id": 28, "download_url": "media/ontologies/HIVO004/16/hivo004.owl", "submission_id": 16, "domain": null, "description": "A Project Of Biomedical Ontology for Systems Biomedicine\r\n\r\nThe Project includes so far a main ontology (HIVOnt0**.owl) which is imported by two sub ontologies AIDSClinic0**.owl and HumanGeneCodon0**.owl.\r\n\r\nThe goals of the Project of HIV Ontology(PHIVO) for Knowledge Integrations include \r\n \r\n1. Providing AIDS clinics and HIV virology and the future biomedicines, including the Systems Biomedicine(SBM), the Precision Biomedicine(PBM) and the Knowledge-Integrated Biomedicine(KIMB), with the knowledge resources expressed in the way of ontology, which is able to be operated on engineering ground. \r\n2. Carrying out the methodology researches for the goals above. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-31T00:00:00", "date_created": "2016-08-31T19:17:56", "home_page": "http://blog.51.ca/u-345129/", "version": "016", "has_ontology_language": "OWL", "nb_classes": 1295, "nb_individuals": 94, "nb_properties": 204, "max_depth": 10, "max_children": 36, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HNS", "name": "HNS_Ontolgoy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3609, "download_url": "media/ontologies/HNS/1/hns.owl", "submission_id": 1, "domain": null, "description": "The purpose of this research is to develop an ontology with subsequent testing and evaluation, for identifying utility and value. The domain that has been chosen is human nervous system (HNS) disorders. It is hypothesized here that an ontology-based patient records management system is more effective in meeting and addressing complex information needs of health-care personnel. Therefore, this study has been based on the premise that developing an ontology and using it as a component of the search interface in hospital records management systems will lead to more efficient and effective management of health-care. It is proposed here to develop an ontology of the domain of HNS disorders using a standard vocabulary such as MeSH or SNOMED CT. The principal classes of an ontology include facet analysis for arranging concepts based on their common characteristics to build mutually exclusive classes. We combine faceted theory with description logic, which helps us to better query and retrieve data by implementing an ontological model. Protégé 5.2.0 was used as ontology editor. The use of ontologies for domain modelling will be of acute help to doctors for searching patient records. In this paper we show how the faceted approach helps us to build a flexible model and retrieve better information. We use the medical domain as a case study to show examples and implementation.", "documentation": "https://github.com/subhashishhh/HNS-Ontology", "publication": "https://www.ergon-verlag.de/isko_ko/downloads/ko_46_2019_3_c.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2020-05-05T00:00:00", "date_created": "2020-05-05T19:45:08", "home_page": "https://github.com/subhashishhh/HNS-Ontology/blob/master/HNS_ontology.owl", "version": "4.0", "has_ontology_language": "OWL", "nb_classes": 546, "nb_individuals": 142, "nb_properties": 15, "max_depth": 7, "max_children": 28, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HOIP", "name": "Homeostasis imbalance process ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6528, "download_url": "media/ontologies/HOIP/65/hoip.owl", "submission_id": 65, "domain": null, "description": "Homeostasis imbalance process ontology (HoIP) is an ontology that systematizes a wide variety of terms involving homeostasis imbalance courses and processes.\r\nHoIP focuses on the course of COVID-19 infectious processes and cellular senescence. \r\n\r\n", "documentation": null, "publication": "https://doi.org/10.1101/2023.03.09.531883", "publications": null, "products": null, "taxon": null, "date_released": "2024-04-03T00:00:00", "date_created": "2024-04-03T10:00:11", "home_page": "https://github.com/yuki-yamagata/hoip", "version": "2024/04/03", "has_ontology_language": "OWL", "nb_classes": 14018, "nb_individuals": 0, "nb_properties": 286, "max_depth": 19, "max_children": 828, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HP", "name": "Human Phenotype Ontology (HPO)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7981, "download_url": "media/ontologies/HP/624/hp.owl", "submission_id": 624, "domain": "phenotype", "description": "The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/18950739", "title": "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/26119816", "title": "The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24217912", "title": "The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/30476213", "title": "Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources." } ], "products": [ { "id": "hp.json", "title": "Official HPO release in obographs JSON format", "format": "json", "description": "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format.", "derived_from": "hp/hp-simple-non-classified.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp.json" }, { "id": "hp.obo", "title": "Official HPO release in OBO format", "format": "obo", "description": "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format.", "derived_from": "hp/hp-simple-non-classified.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp.obo" }, { "id": "hp.owl", "title": "Official HPO release in OWL", "format": "owl", "description": "Manually classified version of the ontology without the use of a reasoner, with imported terms, in OWL format (RDF/XML).", "ontology_purl": "http://purl.obolibrary.org/obo/hp.owl" }, { "id": "hp/hp-base.json", "title": "HPO base release in obographs JSON format", "format": "obo", "description": "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in obographs JSON file format.", "derived_from": "hp/hp-base.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-base.json" }, { "id": "hp/hp-base.obo", "title": "HPO base release in OBO format", "format": "obo", "description": "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OBO file format.", "derived_from": "hp/hp-base.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-base.obo" }, { "id": "hp/hp-base.owl", "title": "HPO base release in OWL format", "format": "owl", "description": "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OWL (RDF/XML) file format.", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-base.owl" }, { "id": "hp/hp-full.json", "title": "HPO full release in obographs JSON format", "format": "json", "description": "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in obographs JSON file format.", "derived_from": "hp/hp-full.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-full.json" }, { "id": "hp/hp-full.obo", "title": "HPO full release in OBO format", "format": "obo", "description": "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format.", "derived_from": "hp/hp-full.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-full.obo" }, { "id": "hp/hp-full.owl", "title": "HPO full release in OWL format", "format": "owl", "description": "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format.", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-full.owl" }, { "id": "hp/hp-international.json", "title": "HPO International Edition in obographs JSON format", "format": "json", "description": "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in obographs JSON file format.", "derived_from": "hp/hp-international.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-international.json" }, { "id": "hp/hp-international.obo", "title": "HPO International Edition in OBO format", "format": "obo", "description": "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OBO file format.", "derived_from": "hp/hp-international.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-international.obo" }, { "id": "hp/hp-international.owl", "title": "HPO International Edition in OWL format", "format": "owl", "description": "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format.", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-international.owl" }, { "id": "hp/hp-simple-non-classified.json", "title": "HPO simple, manually classified, without imports in obographs JSON format", "format": "json", "description": "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON file format.", "derived_from": "hp/hp-simple-non-classified.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.json" }, { "id": "hp/hp-simple-non-classified.obo", "title": "HPO simple, manually classified, without imports in OBO format", "format": "obo", "description": "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format.", "derived_from": "hp/hp-simple-non-classified.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.obo" }, { "id": "hp/hp-simple-non-classified.owl", "title": "HPO simple, manually classified, without imports in OWL format", "format": "owl", "description": "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format.", "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.owl" }, { "id": "hp/phenotype.hpoa", "title": "HPO Annotations (Phenotype to Disease)", "format": "tsv", "description": "https://hpo.jax.org/app/data/annotations", "ontology_purl": "http://purl.obolibrary.org/obo/hp/phenotype.hpoa" }, { "id": "hp/phenotype_to_genes.txt", "title": "HPO phenotype to gene annotations", "format": "tsv", "description": "https://hpo.jax.org/app/data/annotations", "ontology_purl": "http://purl.obolibrary.org/obo/hp/phenotype_to_genes.txt" }, { "id": "hp/genes_to_phenotype.txt", "title": "HPO gene to phenotype annotations", "format": "tsv", "description": "https://hpo.jax.org/app/data/annotations", "ontology_purl": "http://purl.obolibrary.org/obo/hp/genes_to_phenotype.txt" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2026-02-23T13:43:48.002564", "date_created": "2026-02-23T13:43:48.002571", "home_page": "http://www.human-phenotype-ontology.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 32085, "nb_individuals": 0, "nb_properties": 235, "max_depth": 16, "max_children": 570, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "9255128d951fcd43b969ab29270b3631" } }, { "acronym": "BIN", "name": "Body in Numbers project terminology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 2526, "download_url": "media/ontologies/BIN/2/bin.owl", "submission_id": 2, "domain": null, "description": "This ontology was created as a part of Vítězslav Vacek's masters thesis and is describing the terminology used within the Body in Numbers (BiN) project that is currently underway (as of 2019-05-01) at the University of West Bohemia, Czech Republic and focuses on the terminology used during the data collection process.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-05-02T00:00:00", "date_created": "2019-05-01T16:31:46", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 138, "nb_individuals": 0, "nb_properties": 0, "max_depth": 11, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HO", "name": "Histological Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 184, "download_url": "media/ontologies/HO/78/ho.owl", "submission_id": 78, "domain": null, "description": "A Histological Ontology of the Human Cardiovascular System v. 1.1", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-06T00:00:00", "date_created": "2017-10-06T17:45:42", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 213, "nb_individuals": 3, "nb_properties": 39, "max_depth": 5, "max_children": 46, "avg_children": 3, "classifiable": true, "nb_inconsistent": 4, "indexed": true, "md5sum": null } }, { "acronym": "HRDO", "name": "Disease core ontology applied to Rare Diseases", "status": "Classified", "topics": null, "species": null, "submission": { "id": 375, "download_url": "media/ontologies/HRDO/2/hrdo.owl", "submission_id": 2, "domain": null, "description": "This resource was designed during a PhD in medical informatics (funded by INSERM, 2010-2012). Its components are (i) a core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and (ii) an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org).\r\n</ br>\r\nResearch experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr). \r\n\r\nCurrent production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database. This ontology is now available on Bioportal.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-09-11T00:00:00", "date_created": "2014-02-07T22:23:20", "home_page": null, "version": "V2", "has_ontology_language": "OWL", "nb_classes": 13539, "nb_individuals": 0, "nb_properties": 20, "max_depth": 12, "max_children": 3514, "avg_children": 13, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HSAPDV", "name": "Human Developmental Stages", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7140, "download_url": "media/ontologies/HSAPDV/14/hsapdv.owl", "submission_id": 14, "domain": "anatomy and development", "description": "Life cycle stages for Human", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "hsapdv.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hsapdv.owl" }, { "id": "hsapdv.obo", "ontology_purl": "http://purl.obolibrary.org/obo/hsapdv.obo" } ], "taxon": null, "date_released": "2025-01-27T12:29:40.123093", "date_created": "2025-01-27T12:29:40.123098", "home_page": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv", "version": null, "has_ontology_language": "OWL", "nb_classes": 260, "nb_individuals": 0, "nb_properties": 3, "max_depth": 2, "max_children": 238, "avg_children": 130, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "68cb64cf8ffa5276284713f806fc48e6" } }, { "acronym": "HSO", "name": "Health Surveillance Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4772, "download_url": "media/ontologies/HSO/11/hso.owl", "submission_id": 11, "domain": "health", "description": "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "hso.owl", "homepage": "https://w3id.org/hso", "ontology_purl": "http://purl.obolibrary.org/obo/hso.owl" } ], "taxon": null, "date_released": "2021-12-20T13:18:30.149714", "date_created": "2021-12-20T13:18:30.149730", "home_page": "https://w3id.org/hso", "version": null, "has_ontology_language": "OWL", "nb_classes": 448, "nb_individuals": 192, "nb_properties": 149, "max_depth": 13, "max_children": 39, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "935e7235775b290e8d5cf6500237326e" } }, { "acronym": "PANDA", "name": "Probabilistic Knowledge Assembly Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 578, "download_url": "media/ontologies/PANDA/2/panda.owl", "submission_id": 2, "domain": null, "description": "Probabilistic Knowledge Assembly (PANDA) Ontology has been developed in the context of the DARPA's Big Mechanism research program. It provides a semantic interface for capturing information on molecular interactions extracted from scientific texts.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-01-01T00:00:00", "date_created": "2017-01-16T11:30:58", "home_page": null, "version": "0.9", "has_ontology_language": "OWL", "nb_classes": 99, "nb_individuals": 0, "nb_properties": 68, "max_depth": 4, "max_children": 16, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "METAMESH", "name": "Meta Mesh Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7709, "download_url": "media/ontologies/METAMESH/2/metamesh.owl", "submission_id": 2, "domain": null, "description": "The Meta Mesh Ontology (MMO) is a universal framework designed to integrate diverse knowledge bases across all domains of inquiry. It provides a coherent, philosophically grounded foundation that enables the unification of medical, psychological, social, technological, ecological, and cultural knowledge systems. While developed and applied initially in the context of psychiatry and interoperability (e.g., smart cities, robotics, clinical research), the MMO is structured to encompass and interlink every form of knowledge into a single, coherent, and interoperable framework., \r\n The Meta Mesh Ontology (MMO) is a universal framework designed to integrate diverse knowledge bases \r\n across all domains of inquiry. It provides a coherent, philosophically grounded foundation \r\n that enables the unification of medical, \r\n and cultural knowledge systems. While developed and applied initially in the context \r\n of psychiatry and interoperability (e.g., \r\n the MMO is structured to encompass and interlink every form of knowledge \r\n into a single, and interoperable framework.\r\n ", "documentation": "https://github.com/MetaMeshOntology/meta-mesh-ontology/blob/main/README.md", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2024-09-03T00:00:00", "date_created": "2025-11-01T00:00:00", "home_page": "https://github.com/MetaMeshOntology/meta-mesh-ontology", "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 79, "nb_individuals": 77, "nb_properties": 20, "max_depth": 2, "max_children": 43, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MATRCOMPOUND", "name": "Material Compound", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 15, "download_url": "media/ontologies/MATRCOMPOUND/1/matrcompound.owl", "submission_id": 1, "domain": null, "description": "Material Compound details from SWEET ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T20:50:34", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3535, "nb_individuals": 1226, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "METPO", "name": "METPO", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8078, "download_url": "media/ontologies/METPO/19/metpo.owl", "submission_id": 19, "domain": null, "description": "An ontology of ecophysiological traits of microbes, including tolerated and preferred growth conditions, Microbial ecophysiological trait and phenotype ontology", "documentation": "https://github.com/berkeleybop/metpo", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2024-01-01T00:00:00", "date_created": "2026-03-24T00:00:00", "home_page": "https://github.com/berkeleybop/metpo", "version": "2026-03-24", "has_ontology_language": "OWL", "nb_classes": 281, "nb_individuals": 0, "nb_properties": 102, "max_depth": 6, "max_children": 30, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MATRROCK", "name": "Material Rock", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 134, "download_url": "media/ontologies/MATRROCK/1/matrrock.owl", "submission_id": 1, "domain": null, "description": "RocK material", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T21:17:40", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3535, "nb_individuals": 1226, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MF", "name": "Mental Functioning Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7947, "download_url": "media/ontologies/MF/31/mf.owl", "submission_id": 31, "domain": "health", "description": "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mf.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mf.owl" } ], "taxon": null, "date_released": "2026-02-09T12:44:19.172402", "date_created": "2026-02-09T12:44:19.172404", "home_page": "https://github.com/jannahastings/mental-functioning-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 401, "nb_individuals": 19, "nb_properties": 16, "max_depth": 13, "max_children": 27, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "83ebb20d3aa2caccc72f77c2cfafa9a3" } }, { "acronym": "MGBD", "name": "MGB Drug List", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5229, "download_url": "media/ontologies/MGBD/7/mgbd.owl", "submission_id": 7, "domain": null, "description": "MGB Drug List", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-06-24T00:00:00", "date_created": "2022-07-05T20:33:35", "home_page": null, "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 10, "nb_individuals": 5, "nb_properties": 0, "max_depth": 2, "max_children": 5, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MATRELEMENT", "name": "Material Element", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 518, "download_url": "media/ontologies/MATRELEMENT/1/matrelement.owl", "submission_id": 1, "domain": null, "description": "Material Element part of SWEET ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T20:46:05", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3535, "nb_individuals": 1226, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HOM", "name": "Homology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1005, "download_url": "media/ontologies/HOM/7/hom.owl", "submission_id": 7, "domain": null, "description": "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "hom.owl", "ontology_purl": "http://purl.obolibrary.org/obo/hom.owl" } ], "taxon": null, "date_released": "2017-12-13T01:41:29.177732", "date_created": "2017-12-13T01:41:29.177764", "home_page": "http://bioinfo.unil.ch", "version": null, "has_ontology_language": "OWL", "nb_classes": 66, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 13, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d3f7a3aabf82ce1f5cfc2112875eeba9" } }, { "acronym": "MATR", "name": "Material", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 454, "download_url": "media/ontologies/MATR/1/matr.owl", "submission_id": 1, "domain": null, "description": "List of material Objects from SWEET ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T20:38:55", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3535, "nb_individuals": 1226, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HOME", "name": "Health Ontology for Minority Equity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5124, "download_url": "media/ontologies/HOME/1/home.owl", "submission_id": 1, "domain": null, "description": "An ontology to record the physical, emotional and psychological effects resulting from differences in treatment that citizens receive based on their identity when entering healthcare institutions. We present the first version of such a Health Ontology for Minority Equity (HOME)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-05-31T00:00:00", "date_created": "2022-05-31T18:12:36", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 82, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 29, "avg_children": 21, "classifiable": true, "nb_inconsistent": 29, "indexed": true, "md5sum": null } }, { "acronym": "HOM-ICD9", "name": "ICD9 for Health Ontology Mapper", "status": "Classified", "topics": null, "species": null, "submission": { "id": 768, "download_url": "media/ontologies/HOM-ICD9/4/hom-icd9.owl", "submission_id": 4, "domain": null, "description": "This is the ICD9 ontology with a different hierarchical view, but based on the same nomenclature and code structure. \r\nUseful for researchers that look for a disease by ICD9 code.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-04-26T07:00:00", "date_created": "2011-04-26T22:58:45", "home_page": null, "version": "2", "has_ontology_language": "OWL", "nb_classes": 22202, "nb_individuals": 0, "nb_properties": 10, "max_depth": 6, "max_children": 947, "avg_children": 109, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ML_MCR_TX", "name": "MultiCaRe Taxonomy (ML Labels)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7063, "download_url": "media/ontologies/ML_MCR_TX/1/ml_mcr_tx.owl", "submission_id": 1, "domain": null, "description": "This is a reduced version of the MultiCaRe Taxonomy (MCR_TX), the class structure used for medical image classification in the MultiCaRe dataset. This reduced version includes only the labels used in Machine Learning (ML) model training.", "documentation": "https://github.com/mauro-nievoff/MCR2-WIP/blob/main/taxonomy_files/MultiCaRe%20Taxonomy%20Documentation.pdf", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-12-13T00:00:00", "date_created": "2024-12-13T19:16:37", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 81, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 21, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD9CM-PROC", "name": "ICD9CM Procedures", "status": "Classified", "topics": null, "species": null, "submission": { "id": 699, "download_url": "media/ontologies/ICD9CM-PROC/1/icd9cm-proc.owl", "submission_id": 1, "domain": null, "description": "This view contains only the PROCEDURES sub-tree of the ICD9CM ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-09-16T07:00:00", "date_created": "2012-09-18T07:34:15", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 4664, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 18, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD10CM", "name": "International Classification of Diseases, Version 10 - Clinical Modification", "status": "Classified", "topics": null, "species": null, "submission": { "id": 332, "download_url": "media/ontologies/ICD10CM/11/icd10cm.umls", "submission_id": 11, "domain": null, "description": "International Classification of Diseases, 10th Edition, Clinical Modification, 2011_01", "documentation": "http://www.cms.hhs.gov/", "publication": "http://www.cms.hhs.gov/", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:46", "date_created": "2017-02-06T21:25:46", "home_page": "http://www.cms.hhs.gov/", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 94276, "nb_individuals": 0, "nb_properties": 22, "max_depth": 6, "max_children": 34, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD10PCS", "name": "International Classification of Diseases, Version 10 - Procedure Coding System", "status": "Classified", "topics": null, "species": null, "submission": { "id": 341, "download_url": "media/ontologies/ICD10PCS/10/icd10pcs.umls", "submission_id": 10, "domain": null, "description": "ICD-10-PCS, 2009", "documentation": "http://www.cms.hhs.gov", "publication": "http://www.cms.hhs.gov", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:01", "date_created": "2017-02-06T21:26:01", "home_page": "http://www.cms.hhs.gov", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 183988, "nb_individuals": 0, "nb_properties": 19, "max_depth": 6, "max_children": 33, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d4", "name": "ICF-d4. MOBILITY", "status": "Classified", "topics": null, "species": null, "submission": { "id": 658, "download_url": "media/ontologies/ICF-d4/1/icf-d4.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 4: MOBILITY\" (d4) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:35:33", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 126, "nb_individuals": 2511, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MIRAPIE", "name": "MInimal Requirements for Automated Provenance Information Enrichment in biomedical research", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7970, "download_url": "media/ontologies/MIRAPIE/2/mirapie.owl", "submission_id": 2, "domain": null, "description": "A description of the ontology and the undelying model, as well as exemplary usage scenarios, can be found in the related publication and supplement, respectively. <link> (will be updated once published)", "documentation": "https://w3id.org/mirapie", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-06T02:11:25", "date_created": "2026-02-05T00:00:00", "home_page": null, "version": "1.0.1", "has_ontology_language": "OWL", "nb_classes": 39, "nb_individuals": 7, "nb_properties": 30, "max_depth": 5, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICDO", "name": "International Classification of Diseases Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6564, "download_url": "media/ontologies/ICDO/13/icdo.owl", "submission_id": 13, "domain": null, "description": "A biomedical ontology for logical representation of the terms and relations related to the International Classification of Diseases (ICD)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-04-19T18:07:48", "date_created": "2024-04-19T18:07:50", "home_page": "https://github.com/icdo/ICDO", "version": "1.0.83", "has_ontology_language": "OWL", "nb_classes": 1388, "nb_individuals": 4, "nb_properties": 233, "max_depth": 12, "max_children": 54, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD-O-3-M", "name": "ICD-O-3-M International Classification of Diseases for Oncology Morphology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2607, "download_url": "media/ontologies/ICD-O-3-M/3/icd-o-3-m.owl", "submission_id": 3, "domain": null, "description": "ICD-O-3-M International Classification of Diseases for Oncology, Morphology version: ICD-O-3.1 (2011)\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-05-09T00:00:00", "date_created": "2019-06-04T11:01:20", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 1080, "nb_individuals": 0, "nb_properties": 1, "max_depth": 1, "max_children": 1080, "avg_children": 1080, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD-O-3-T", "name": "ICD-O-3-T International Classification of Diseases for Oncology Topography", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2614, "download_url": "media/ontologies/ICD-O-3-T/2/icd-o-3-t.owl", "submission_id": 2, "domain": null, "description": "International Classification of Diseases for Oncology - Topography", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-05-13T00:00:00", "date_created": "2019-06-04T11:03:42", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 401, "nb_individuals": 0, "nb_properties": 1, "max_depth": 2, "max_children": 70, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-activity", "name": "iceci-activity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 466, "download_url": "media/ontologies/iceci-activity/2/iceci-activity.owl", "submission_id": 2, "domain": null, "description": "ICECI ACTIVITY WHEN INJURED(C.5)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T19:37:45", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 32, "nb_individuals": 29, "nb_properties": 7, "max_depth": 3, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CEPH", "name": "Cephalopod Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 973, "download_url": "media/ontologies/CEPH/2/ceph.owl", "submission_id": 2, "domain": "anatomy", "description": "An anatomical and developmental ontology for cephalopods", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ceph.owl", "title": "main version", "ontology_purl": "http://purl.obolibrary.org/obo/ceph.owl" }, { "id": "ceph.obo", "title": "oboformat edition", "ontology_purl": "http://purl.obolibrary.org/obo/ceph.obo" } ], "taxon": { "id": "NCBITaxon:6605", "label": "Cephalopod" }, "date_released": "2017-12-12T21:18:07.617103", "date_created": "2017-12-12T21:18:07.617127", "home_page": "https://github.com/obophenotype/cephalopod-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 1569, "nb_individuals": 24, "nb_properties": 34, "max_depth": 19, "max_children": 73, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "182b017ab445aafbc1d732b8690fb566" } }, { "acronym": "MATRROCKIGNEOUS", "name": "Material Rock Igneouus", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 606, "download_url": "media/ontologies/MATRROCKIGNEOUS/2/matrrockigneous.owl", "submission_id": 2, "domain": null, "description": "matrRockIgneous", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T21:27:36", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3535, "nb_individuals": 1226, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MINERAL", "name": "Material Mineral", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 547, "download_url": "media/ontologies/MINERAL/1/mineral.owl", "submission_id": 1, "domain": null, "description": "Material Mineral ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T20:58:51", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3553, "nb_individuals": 1226, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-countermeasures", "name": "iceci-countermeasures", "status": "Classified", "topics": null, "species": null, "submission": { "id": 395, "download_url": "media/ontologies/iceci-countermeasures/2/iceci-countermeasures.owl", "submission_id": 2, "domain": null, "description": "ICECI PERSONAL COUNTERMEASURES(S.3) and ENVIRONMENTAL COUNTERMEASURES(S.4)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T19:46:00", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 29, "nb_individuals": 26, "nb_properties": 7, "max_depth": 2, "max_children": 16, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BMO", "name": "Biomarker Ontology", "status": "Classified", "topics": [], "species": [], "submission": { "id": 863, "download_url": "media/ontologies/BMO/1/bmo.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T10:55:29.839491", "date_created": "2017-11-28T10:55:29.839480", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 170, "nb_individuals": 0, "nb_properties": 7, "max_depth": 7, "max_children": 37, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BMT", "name": "Biomedical Topics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 196, "download_url": "media/ontologies/BMT/1/bmt.owl", "submission_id": 1, "domain": null, "description": "An ontology of biological and biomedical topics, created from merging the EDAM Topics sub-ontology with auxiliary topics that are out of scope of EDAM.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-10-06T00:00:00", "date_created": "2014-10-06T13:21:14", "home_page": null, "version": "1.4", "has_ontology_language": "OWL", "nb_classes": 253, "nb_individuals": 0, "nb_properties": 12, "max_depth": 5, "max_children": 35, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BMTO", "name": "Biomedical Topics Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 731, "download_url": "media/ontologies/BMTO/5/bmto.owl", "submission_id": 5, "domain": null, "description": "An ontology of biological and biomedical topics, created from merging the EDAM Topics sub-ontology with auxiliary topics that are out of scope of EDAM.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-10-06T00:00:00", "date_created": "2014-10-06T13:16:06", "home_page": null, "version": "1.4", "has_ontology_language": "OWL", "nb_classes": 253, "nb_individuals": 0, "nb_properties": 12, "max_depth": 5, "max_children": 35, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BNO", "name": "Bionutrition Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 633, "download_url": "media/ontologies/BNO/2/bno.owl", "submission_id": 2, "domain": null, "description": "The Bionutrition Ontology relates concepts and terminologies used for human nutrition in a clinical and biomedical setting.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-08-08T07:00:00", "date_created": "2013-08-15T19:10:25", "home_page": null, "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 100, "nb_individuals": 0, "nb_properties": 4, "max_depth": 7, "max_children": 13, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BP", "name": "BioPAX Ontology of Biological Pathways", "status": "Classified", "topics": null, "species": null, "submission": { "id": 274, "download_url": "media/ontologies/BP/1/bp.owl", "submission_id": 1, "domain": null, "description": "The BioPAX ontology (www.biopax.org) is a standard language for formally representing biological pathways. BioPAX Level 3 supports the representation of metabolic pathways, signal transduction pathways, protein-protein interaction networks, gene regulatory networks and genetic interactions.", "documentation": "www.biopax.org/release/biopax-level3-documentation.pdf", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-07-02T07:00:00", "date_created": "2010-07-29T13:28:09", "home_page": "www.biopax.org", "version": "Level3 v1.0", "has_ontology_language": "OWL", "nb_classes": 69, "nb_individuals": 0, "nb_properties": 96, "max_depth": 4, "max_children": 15, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BRO-Activity", "name": "Biomedical Resource Ontology - Activity View", "status": "Classified", "topics": null, "species": null, "submission": { "id": 703, "download_url": "media/ontologies/BRO-Activity/2/bro-activity.owl", "submission_id": 2, "domain": null, "description": "This view represents a subset of the BRO containing all the Activity classes that are relevant in the biomedical domain.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-17T07:00:00", "date_created": "2010-06-28T03:17:41", "home_page": "http://www.biositemaps.org/", "version": "3.1", "has_ontology_language": "OWL", "nb_classes": 21, "nb_individuals": 3, "nb_properties": 45, "max_depth": 2, "max_children": 13, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BRO-Resource", "name": "BRO Resource View", "status": "Classified", "topics": null, "species": null, "submission": { "id": 501, "download_url": "media/ontologies/BRO-Resource/3/bro-resource.owl", "submission_id": 3, "domain": null, "description": "This view represents a subset of the BRO containing all the Resource types that are relevant for the biomedical domain. This view also includes the Deprecated Resource types. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-17T07:00:00", "date_created": "2010-06-28T02:53:36", "home_page": "http://www.biositemaps.org/", "version": "3.1", "has_ontology_language": "OWL", "nb_classes": 363, "nb_individuals": 6, "nb_properties": 45, "max_depth": 7, "max_children": 29, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HSPO", "name": "Health and Social Person-centric Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5870, "download_url": "media/ontologies/HSPO/3/hspo.owl", "submission_id": 3, "domain": null, "description": "The HSPO is an ontology that aims to represent and link together information about an individual from multiple domains. This work is motivated by the need to better understand the drivers of health outcomes that may arise from other domains including, but not limited to, the social determinants of health (e.g. ethnicity, transportation, education). This ontology can also describe a group of individuals that share similar characteristics (i.e. a cohort). Through this ontology we attempt to define a number of social contexts or social domains which can be useful to organise information coming from different terminologies such as ICD and SNOMED. \r\n\r\nGit Repository, Documentation and License details: https://github.com/IBM/hspo-ontology\r\nApache License 2.0", "documentation": "https://github.com/IBM/hspo-ontology", "publication": "https://github.com/IBM/hspo-ontology", "publications": null, "products": null, "taxon": null, "date_released": "2023-05-25T00:00:00", "date_created": "2023-06-09T15:38:35", "home_page": "https://github.com/IBM/hspo-ontology", "version": "0.1.0", "has_ontology_language": "OWL", "nb_classes": 40641, "nb_individuals": 200, "nb_properties": 96, "max_depth": 17, "max_children": 5924, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HTN", "name": "Hypertension Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2627, "download_url": "media/ontologies/HTN/1/htn.owl", "submission_id": 1, "domain": null, "description": "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "htn.owl", "title": "HTN", "ontology_purl": "http://purl.obolibrary.org/obo/htn.owl" } ], "taxon": null, "date_released": "2019-06-10T14:40:58.259265", "date_created": "2019-06-10T14:40:58.259291", "home_page": "https://github.com/aellenhicks/htn_owl", "version": null, "has_ontology_language": "OWL", "nb_classes": 603, "nb_individuals": 0, "nb_properties": 263, "max_depth": 14, "max_children": 36, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "53c4120c49cc8a2ae78d37313e3a898e" } }, { "acronym": "HTO", "name": "Horridge Test Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4984, "download_url": "media/ontologies/HTO/1/hto.owl", "submission_id": 1, "domain": null, "description": "This is just a test ontology. Called the Horridge Test Ontology (HTO)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-03-24T00:00:00", "date_created": "2022-03-24T17:59:18", "home_page": null, "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 3, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HUGO", "name": "Human Genome Organization Gene Symbols", "status": "Classified", "topics": null, "species": null, "submission": { "id": 257, "download_url": "media/ontologies/HUGO/3/hugo.owl", "submission_id": 3, "domain": null, "description": "Human Genome Organisation (HUGO) Gene Nomenclature Committee at the European Bioinformatics Institute approves a gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database.", "documentation": "http://www.genenames.org/", "publication": "http://www.genenames.org/", "publications": null, "products": null, "taxon": null, "date_released": "2010-01-07T08:00:00", "date_created": "2010-12-21T16:27:14", "home_page": "http://www.genenames.org/", "version": "July2010", "has_ontology_language": "OWL", "nb_classes": 32918, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 19361, "avg_children": 866, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HUPSON", "name": "Human Physiology Simulation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 309, "download_url": "media/ontologies/HUPSON/1/hupson.owl", "submission_id": 1, "domain": null, "description": "Large biomedical simulation initiatives, such as the Virtual Physiological Human (VPH), are substantially dependent on controlled vocabularies to facilitate the exchange of information, of data and of models. Hindering these initiatives is a lack of a comprehensive ontology that covers the essential concepts of the simulation domain. \r\nWe propose a first version of a newly constructed ontology, HuPSON, as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles.", "documentation": "http://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads.html", "publication": "http://www.jbiomedsem.com/content/4/1/35", "publications": null, "products": null, "taxon": null, "date_released": "2014-04-08T00:00:00", "date_created": "2014-04-08T04:46:38", "home_page": "http://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads.html", "version": "1.1.1", "has_ontology_language": "OWL", "nb_classes": 2920, "nb_individuals": 15, "nb_properties": 91, "max_depth": 13, "max_children": 187, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "I2SV", "name": "Integration and Implementation Sciences Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4430, "download_url": "media/ontologies/I2SV/5/i2sv.skos", "submission_id": 5, "domain": null, "description": "Terms used to describe research concepts, methods and processes for addressing complex societal and environmental problems, especially investigations involving integration across different disciplinary and stakeholder perspectives, as well as implementation of findings into policy and practice change. The terms were originally developed for the Integration and Implementation Insights blog (http://i2Insights.org).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-14T00:00:00", "date_created": "2021-04-22T06:37:21", "home_page": "https://i2insights.org/index/integration-and-implementation-sciences-vocabulary/", "version": "1.0.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 187, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "I-ADOPT", "name": "I-ADOPT Framework Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7381, "download_url": "media/ontologies/I-ADOPT/6/i-adopt.owl", "submission_id": 6, "domain": null, "description": "The I-ADOPT Framework is an ontology designed to facilitate interoperability between existing variable description models (including ontologies, taxonomy, and structured controlled vocabularies). One of the challenges in representing semantic descriptions of variables is getting people to agree about what they mean when describing the components that define the variables. The I-ADOPT ontology addresses this by providing core components and their relations that can be applied to define machine-interpretable variable descriptions that re-use FAIR vocabulary terms. This first version of the ontology has been developed by a core group of terminology experts and users from the Research Data Alliance (RDA) InteroperAble Descriptions of Observable Property Terminology (I-ADOPT) Working Group.", "documentation": "https://zenodo.org/record/6520132#.YrcMzXbP1D9", "publication": "['http://ceur-ws.org/Vol-2969/paper10-s4biodiv.pdf']", "publications": null, "products": null, "taxon": null, "date_released": "2025-05-29T01:06:36", "date_created": "2025-05-29T01:06:37", "home_page": null, "version": "1.1.0", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 0, "nb_properties": 18, "max_depth": 3, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IAML-MOP", "name": "IAML Medium of Performance Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 831, "download_url": "media/ontologies/IAML-MOP/1/iaml-mop.skos", "submission_id": 1, "domain": null, "description": "Instruments and/or voices, devices and other performers which make up a musical work.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-07T00:00:00", "date_created": "2017-11-17T21:15:11", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 420, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IAO", "name": "Information Artifact Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8102, "download_url": "media/ontologies/IAO/12/iao.owl", "submission_id": 12, "domain": "information", "description": "An ontology of information entities.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "iao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/iao.owl" }, { "id": "iao/ontology-metadata.owl", "page": "https://github.com/information-artifact-ontology/IAO/wiki/OntologyMetadata", "title": "IAO ontology metadata", "ontology_purl": "http://purl.obolibrary.org/obo/iao/ontology-metadata.owl" }, { "id": "iao/dev/iao.owl", "title": "IAO dev", "ontology_purl": "http://purl.obolibrary.org/obo/iao/dev/iao.owl" }, { "id": "iao/d-acts.owl", "title": "ontology of document acts", "contact": { "email": "mbrochhausen@gmail.com", "label": "Mathias Brochhausen" }, "description": "An ontology based on a theory of document acts describing what people can do with documents", "ontology_purl": "http://purl.obolibrary.org/obo/iao/d-acts.owl" } ], "taxon": null, "date_released": "2026-04-13T12:15:06.129001", "date_created": "2026-04-13T12:15:06.129004", "home_page": "https://github.com/information-artifact-ontology/IAO/", "version": null, "has_ontology_language": "OWL", "nb_classes": 267, "nb_individuals": 21, "nb_properties": 54, "max_depth": 11, "max_children": 40, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "051f4850578f87c311c22a0a3d886696" } }, { "acronym": "IBD", "name": "Indian Biodiversity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4593, "download_url": "media/ontologies/IBD/1/ibd.owl", "submission_id": 1, "domain": null, "description": "Indian Biodiversity Ontology contains the semantic information about the domain of Indian Biodiversity ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-04T00:00:00", "date_created": "2021-06-04T09:17:50", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 362, "nb_individuals": 3, "nb_properties": 13, "max_depth": 7, "max_children": 108, "avg_children": 89, "classifiable": true, "nb_inconsistent": 108, "indexed": true, "md5sum": null } }, { "acronym": "IBIO", "name": "IndianBiodiversity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4580, "download_url": "media/ontologies/IBIO/1/ibio.owl", "submission_id": 1, "domain": null, "description": "Conceptualization of knowledge of Indian Biodiversity domain.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-19T00:00:00", "date_created": "2021-06-19T19:08:47", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 362, "nb_individuals": 3, "nb_properties": 13, "max_depth": 7, "max_children": 108, "avg_children": 89, "classifiable": true, "nb_inconsistent": 108, "indexed": true, "md5sum": null } }, { "acronym": "ABA-AMB", "name": "Allen Brain Atlas (ABA) Adult Mouse Brain Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 631, "download_url": "media/ontologies/ABA-AMB/1/aba-amb.owl", "submission_id": 1, "domain": null, "description": "Allen Brain Atlas P56 Mouse Ontology", "documentation": "http://mouse.brain-map.org/atlas/index.html", "publication": "http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470054085.html", "publications": null, "products": null, "taxon": null, "date_released": "2009-06-12T07:00:00", "date_created": "2009-08-09T00:18:35", "home_page": "http://www.brain-map.org", "version": "1", "has_ontology_language": "OWL", "nb_classes": 913, "nb_individuals": 0, "nb_properties": 2, "max_depth": 9, "max_children": 28, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICHOM-PROMS-PCB", "name": "ICHOM Set Pregnancy and Childbirth", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5814, "download_url": "media/ontologies/ICHOM-PROMS-PCB/3/ichom-proms-pcb.skos", "submission_id": 3, "domain": null, "description": "The ICHOM Set of Patient-Centered Outcome Measures for Pregnancy And Childbirth is the result of hard work by a group of leading physicians, measurement experts and patients. It is a recommendation of the outcomes that matter most to persons experiencing Pregnancy And Childbirth. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-05-08T00:00:00", "date_created": "2023-05-10T13:18:01", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 106, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICO", "name": "Informed Consent Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7994, "download_url": "media/ontologies/ICO/18/ico.owl", "submission_id": 18, "domain": "investigations", "description": "An ontology of clinical informed consents", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ico.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ico.owl" } ], "taxon": null, "date_released": "2026-03-02T12:19:22.824616", "date_created": "2026-03-02T12:19:22.824620", "home_page": "https://github.com/ICO-ontology/ICO", "version": null, "has_ontology_language": "OWL", "nb_classes": 1197, "nb_individuals": 22, "nb_properties": 77, "max_depth": 15, "max_children": 82, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "afd93d43a47b39f060a2ff01960c0a8e" } }, { "acronym": "ACESO", "name": "Adverse Childhood Experiences Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2310, "download_url": "media/ontologies/ACESO/3/aceso.owl", "submission_id": 3, "domain": null, "description": "An ontology to help describe data about Adverse Childhood Experiences.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-12-21T00:00:00", "date_created": "2019-02-25T17:40:17", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 296, "nb_individuals": 0, "nb_properties": 93, "max_depth": 11, "max_children": 29, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ACGT-MO", "name": "Cancer Research and Management ACGT Master Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 571, "download_url": "media/ontologies/ACGT-MO/2/acgt-mo.owl", "submission_id": 2, "domain": null, "description": "The intention of the ACGT Master Ontology (MO) is to represent the domain of cancer research and management in a computationally tractable manner.", "documentation": "http://www.ifomis.org/acgt", "publication": "http://www.ifomis.org/acgt", "publications": null, "products": null, "taxon": null, "date_released": "2010-01-03T08:00:00", "date_created": "2010-03-17T10:04:50", "home_page": "http://www.ifomis.org/acgt", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 1770, "nb_individuals": 61, "nb_properties": 260, "max_depth": 18, "max_children": 66, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-NOCM", "name": "ICF without content model", "status": "Classified", "topics": null, "species": null, "submission": { "id": 629, "download_url": "media/ontologies/ICF-NOCM/1/icf-nocm.owl", "submission_id": 1, "domain": null, "description": "This is a version of ICF OWL ontology that has the WHO-FIC \"content model\" entities stripped out. Definitions and labels were moved from content model individuals to entity annotations.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-01-29T00:00:00", "date_created": "2014-01-30T00:09:43", "home_page": null, "version": "1.0.2", "has_ontology_language": "OWL", "nb_classes": 1557, "nb_individuals": 0, "nb_properties": 6, "max_depth": 6, "max_children": 20, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MSSMHHEAR", "name": "Test HHEAR", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8018, "download_url": "media/ontologies/MSSMHHEAR/2/mssmhhear.obo", "submission_id": 2, "domain": null, "description": "The Human Health Exposure Analysis Resource (HHEAR)., The Human Health Exposure Analysis Resource (HHEAR) measures exposures that cover the breadth of the “exposome,” which encompasses all environmental exposures including chemical, physical, and biological stressors, as well as lifestyle and social environments, from conception through adulthood. The HHEAR Ontology was developed as an application ontology to represent data collected within the HHEAR program and support data pooling efforts across studies.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-09T00:00:00", "date_created": "2026-03-09T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OBO", "nb_classes": 3690, "nb_individuals": 3399, "nb_properties": 64, "max_depth": 11, "max_children": 200, "avg_children": 3, "classifiable": true, "nb_inconsistent": 3, "indexed": true, "md5sum": null } }, { "acronym": "MWO", "name": "NFDI MatWerk Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7533, "download_url": "media/ontologies/MWO/1/mwo.owl", "submission_id": 1, "domain": null, "description": "NFDI-MatWerk aims to establish a digital infrastructure for Materials Science and Engineering (MSE), fostering improved data sharing and collaboration. This repository provides comprehensive documentation for NFDI MatWerk Ontology (MWO) v3.0.0, a foundational framework designed to structure research data and enhance interoperability within the MSE community. To ensure compliance with top-level ontology standards, MWO v3.0.0 is aligned with the Basic Formal Ontology (BFO) and incorporates the modular approach of the NFDIcore mid-level ontology, enriching metadata through standardized classes and properties. The mwo addresses key aspects of MSE research data, including the NFDI-MatWerk community structure, covering task areas, infrastructure use cases, projects, researchers, and organizations. It also describes essential NFDI resources, such as software, workflows, ontologies, publications, datasets, metadata schemas, instruments, facilities, and educational materials. Additionally, mwo represents NFDI-MatWerk services, academic events, courses, and international collaborations. As the foundation for the MSE Knowledge Graph, mwo facilitates efficient data integration and retrieval, promoting collaboration and knowledge representation across MSE domains. This digital transformation enhances data discoverability, reusability, and accelerates scientific exchange, innovation, and discoveries by optimizing research data management and accessibility., The MatWerk ontology represents research data and related activities of the MSE community. The mwo v3 reuses BFO2020 and NFDi core ontologies and focuses on:\nA) Consortium structure: NFDI MatWerk consortium, its structures (task areas, and participant projects), researches, and organizations\nB) NFDI resources: software, data portals, scientific publications, published datasets, and ontologies\nC) NFDI MatWerk services, events, educational cources, and international collabrations\nD) MSE related instruments, materials, processes, and properties.\nFurther infomration can be found at GitHub: https://github.com/ISE-FIZKarlsruhe/mwo", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-03-28T00:00:00", "date_created": "2025-08-10T00:00:00", "home_page": null, "version": "3.0.0", "has_ontology_language": "OWL", "nb_classes": 335, "nb_individuals": 77, "nb_properties": 121, "max_depth": 9, "max_children": 20, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NAMO", "name": "New Approach Methodology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7561, "download_url": "media/ontologies/NAMO/1/namo.owl", "submission_id": 1, "domain": null, "description": "The New Approach Methodology Ontology and Schema (NAMO) is a comprehensive data framework designed to standardize and integrate information about alternative methods to animal testing in biomedical research. Built on LinkML, NAMO provides a common vocabulary and data structure for describing diverse model systems, from cellular cultures and organ-on-chip devices to computational models and digital twins.", "documentation": "https://monarch-initiative.github.io/namo", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-08-20T00:00:00", "date_created": "2025-08-20T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 234, "nb_individuals": 0, "nb_properties": 67, "max_depth": 7, "max_children": 149, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NCIt-Activity", "name": "Activity-View", "status": "Classified", "topics": null, "species": null, "submission": { "id": 654, "download_url": "media/ontologies/NCIt-Activity/1/ncit-activity.owl", "submission_id": 1, "domain": null, "description": "Activity subtree of NCIt.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-11-18T08:00:00", "date_created": "2009-11-19T07:53:31", "home_page": null, "version": "09.0", "has_ontology_language": "OWL", "nb_classes": 3816, "nb_individuals": 0, "nb_properties": 0, "max_depth": 11, "max_children": 231, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NCIT_NEOPLASM", "name": "Neoplasm", "status": "Classified", "topics": null, "species": null, "submission": { "id": 264, "download_url": "media/ontologies/NCIT_NEOPLASM/1/ncit_neoplasm.owl", "submission_id": 1, "domain": null, "description": "The NCIt Neoplasm provides a core reference set of NCIt neoplasm classification concepts that is designed to facilitate consistent coding, analysis, and data sharing across a broad range of NCI and related resources.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-22T00:00:00", "date_created": "2016-06-22T06:54:47", "home_page": null, "version": "16.05e", "has_ontology_language": "OWL", "nb_classes": 11867, "nb_individuals": 0, "nb_properties": 173, "max_depth": 15, "max_children": 3512, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-descriptor_for_intent", "name": "iceci-descriptor_for_intent", "status": "Classified", "topics": null, "species": null, "submission": { "id": 273, "download_url": "media/ontologies/iceci-descriptor_for_intent/3/iceci-descriptor_for_intent.owl", "submission_id": 3, "domain": null, "description": "ICECI Descriptors for Intent V.1 - V.7", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-10T07:00:00", "date_created": "2010-05-10T22:17:13", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 217, "nb_individuals": 214, "nb_properties": 7, "max_depth": 4, "max_children": 9, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-details_for_activity", "name": "iceci-details_for_activity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 33, "download_url": "media/ontologies/iceci-details_for_activity/3/iceci-details_for_activity.owl", "submission_id": 3, "domain": null, "description": "ICICI Details for activity O1-O2 and S1-S2", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-10T07:00:00", "date_created": "2010-05-10T22:19:04", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 333, "nb_individuals": 330, "nb_properties": 7, "max_depth": 3, "max_children": 34, "avg_children": 11, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-details_for_mechanism", "name": "iceci-details_for_mechanism", "status": "Classified", "topics": null, "species": null, "submission": { "id": 118, "download_url": "media/ontologies/iceci-details_for_mechanism/2/iceci-details_for_mechanism.owl", "submission_id": 2, "domain": null, "description": "ICECI Details for Mechanism T1 - T4", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T20:57:20", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 159, "nb_individuals": 156, "nb_properties": 7, "max_depth": 4, "max_children": 17, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-details_for_place_of_occurrence", "name": "iceci-details_for_place_of_occurrence", "status": "Classified", "topics": null, "species": null, "submission": { "id": 397, "download_url": "media/ontologies/iceci-details_for_place_of_occurrence/2/iceci-details_for_place_of_occurrence.owl", "submission_id": 2, "domain": null, "description": "ICECI Details for place of occurrence P1-P7", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T20:58:40", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 61, "nb_individuals": 58, "nb_properties": 7, "max_depth": 2, "max_children": 24, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-instrument_object_substance", "name": "iceci-instrument_object_substance", "status": "Classified", "topics": null, "species": null, "submission": { "id": 347, "download_url": "media/ontologies/iceci-instrument_object_substance/2/iceci-instrument_object_substance.owl", "submission_id": 2, "domain": null, "description": "ICECI Object/substance producing injury C3", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T20:59:44", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 1085, "nb_individuals": 1082, "nb_properties": 7, "max_depth": 4, "max_children": 26, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICW", "name": "International Classification of Wellness", "status": "Classified", "topics": null, "species": null, "submission": { "id": 676, "download_url": "media/ontologies/ICW/4/icw.owl", "submission_id": 4, "domain": null, "description": "The International Classification of Wellness (ICW) is Wellness taxonomy. ICW provides a scheme for classifying Wellness events (activities) in which persons (users) can participate. ICW furthers the goals of preventative medicine and population health by supporting goal setting, quantifying user engagement in wellness activities, and correlating user engagement in wellness activities with health outcomes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-14T00:00:00", "date_created": "2017-02-14T13:30:02", "home_page": null, "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 121, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ID-AMR", "name": "Infectious Diseases and Antimicrobial Resistance", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4636, "download_url": "media/ontologies/ID-AMR/35/id-amr.skos", "submission_id": 35, "domain": null, "description": "Collections of terms for the ZonMW ID&AMR programme. These terms are based on vocabularies provided for describing project and data content metadata. This submission was created using sheet2rdf GitHub workflow.", "documentation": "https://github.com/fair-data-collective/zonmw-id-amr-vocabulary", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-30T00:00:00", "date_created": "2021-09-30T20:35:58", "home_page": "https://github.com/fair-data-collective/zonmw-id-amr-vocabulary", "version": "1.2.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 272, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MOLSIM", "name": "Molecular Simulation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8098, "download_url": "media/ontologies/MOLSIM/3/molsim.owl", "submission_id": 3, "domain": null, "description": "MOLSIM is an interoperable domain ontology designed to semantically represent platform-agnostic biomolecular simulations as interconnected FAIR datasets. This ontology aims to standardize the representation of molecular simulation data, processes, and methodologies across different platforms and tools., MOLSIM is an interoperable domain ontology designed to semantically represent platform-agnostic atomistic biomolecular simulations as FAIR (Findable, Accessible, Interoperable, and Reusable) datasets. This ontology aims to standardize the representation of atomistic biomolecular simulation data", "documentation": "https://cpclab.github.io/molsim-ontology", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-04-03T01:10:16", "date_created": "2026-04-02T00:00:00", "home_page": "https://github.com/CPCLab/molsim-ontology", "version": "2026-04-02", "has_ontology_language": "OWL", "nb_classes": 2256, "nb_individuals": 85, "nb_properties": 36, "max_depth": 13, "max_children": 74, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BDO", "name": "Bone Dysplasia Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 181, "download_url": "media/ontologies/BDO/9/bdo.owl", "submission_id": 9, "domain": null, "description": "The Bone Dysplasia ontology provides a comprehensive and formal representation of the different domain concepts involved in documenting the full complexity of the skeletal dysplasia domain. It captures and combines the genetic features that discriminate the bone dysplasias with the multitude of phenotypic characteristics manifested by patients and required to be taken into account in order to support the diagnosis process.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-02-08T08:00:00", "date_created": "2012-02-09T23:36:20", "home_page": null, "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 3668, "nb_individuals": 0, "nb_properties": 19, "max_depth": 9, "max_children": 2161, "avg_children": 29, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-intent", "name": "iceci-intent", "status": "Classified", "topics": null, "species": null, "submission": { "id": 445, "download_url": "media/ontologies/iceci-intent/2/iceci-intent.owl", "submission_id": 2, "domain": null, "description": "ICECI Intent C1", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-04-16T07:00:00", "date_created": "2010-05-07T21:08:55", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 15, "nb_individuals": 12, "nb_properties": 7, "max_depth": 3, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "iceci-place_of_occurrence", "name": "iceci-place_of_occurrence", "status": "Classified", "topics": null, "species": null, "submission": { "id": 634, "download_url": "media/ontologies/iceci-place_of_occurrence/2/iceci-place_of_occurrence.owl", "submission_id": 2, "domain": null, "description": "ICECI Place of occurrence C4", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T21:16:24", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 92, "nb_individuals": 89, "nb_properties": 7, "max_depth": 3, "max_children": 14, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BP-METADATA", "name": "BioPortal Metadata Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 56, "download_url": "media/ontologies/BP-METADATA/6/bp-metadata.owl", "submission_id": 6, "domain": null, "description": "This ontology represents the structure that BioPortal uses to represent all of its metadata (ontology details, mappings, notes, reviews, views)", "documentation": null, "publication": "http://ceur-ws.org/Vol-524/swese2009_5.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2013-08-20T07:00:00", "date_created": "2013-08-22T00:53:47", "home_page": "http://www.bioontology.org/wiki/index.php/BioPortal_Metadata", "version": "0.9.5", "has_ontology_language": "OWL", "nb_classes": 92, "nb_individuals": 61, "nb_properties": 164, "max_depth": 5, "max_children": 21, "avg_children": 5, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "FOOD_ONT", "name": "FOOD_ONTOLOGY_OWL", "status": "Classified", "topics": null, "species": null, "submission": { "id": 504, "download_url": "media/ontologies/FOOD_ONT/2/food_ont.owl", "submission_id": 2, "domain": null, "description": "We built food ontology primarily to support comparative effectiveness researchers studying food components or ingredients data. Food Ontology Knowledgebase (FOKB) is developed in English and Turkish that contains details of food ingredients such as their codes (e-codex or codex numbers) and also side effects of them such as allergy. Initially, the first stage of the research project was funded in 2013 by TUBITAK (The Scientific and Technological Research Council of Turkey- http://www.tubitak.gov.tr/en) – 1512 Progressive Entrepreneurship Support Program (Project No: 2120357, “Semantic-based Personal Safe Food Consumption System for Allergic Individuals via Smart Devices”) by the Semantica Trd. Ltd. Co (http://www.semantica.com.tr/en). The initial proposal of the first stage project is presented in Hindawi Publishing Corporation http://www.hindawi.com- The Scientific World Journal with the title “FoodWiki: Ontology-driven Mobile Safe Food Consumption System”. After that, another project as an extension of the first stage project was funded again by TUBITAK toward the end of 2014. It is titled “Artificial Intelligence-based Mobile System for Conscious Food Consumption through Ontology” and recorded with the project number 3140417 in cooperation with Semantica Internet and Software Services Trd. Ltd. Co. and Acıbadem Hospitals Group[1] in consultation with Asst. Prof. Dr. Duygu Çelik. Copyrights of the Food Ontology Knowledgebase (FOKB) and FoodWiki system are reserved by Semantica Trd. Ltd. Co and Acıbadem Hospitals Group (http://www.acibademinternational.com/)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-01T00:00:00", "date_created": "2015-04-27T18:56:49", "home_page": null, "version": "v1.0", "has_ontology_language": "OWL", "nb_classes": 62, "nb_individuals": 1740, "nb_properties": 46, "max_depth": 4, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d840-d859", "name": "ICF-d840-d859. Work and employment", "status": "Classified", "topics": null, "species": null, "submission": { "id": 624, "download_url": "media/ontologies/ICF-d840-d859/1/icf-d840-d859.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 8: MAJOR LIFE AREAS -> Work and employment\" (d840-d859) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:51:47", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 44, "nb_individuals": 2429, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MOC", "name": "Material Organic Compound", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 465, "download_url": "media/ontologies/MOC/1/moc.owl", "submission_id": 1, "domain": null, "description": "Organic Compound", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T21:10:34", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3559, "nb_individuals": 1362, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d860-d879", "name": "ICF-d860-d879. Economic life", "status": "Classified", "topics": null, "species": null, "submission": { "id": 215, "download_url": "media/ontologies/ICF-d860-d879/1/icf-d860-d879.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 8: MAJOR LIFE AREAS -> Economic life\" (d860-d879) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:53:02", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 37, "nb_individuals": 2422, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MNR", "name": "Material Natural Resource ", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 554, "download_url": "media/ontologies/MNR/1/mnr.owl", "submission_id": 1, "domain": null, "description": "Natural Resource", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T21:04:41", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3554, "nb_individuals": 1226, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BAO", "name": "BioAssay Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 772, "download_url": "media/ontologies/BAO/32/bao.owl", "submission_id": 32, "domain": null, "description": "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 1000 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc.). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation.", "documentation": "http://www.bioassayontology.org/", "publication": "http://www.bioassayontology.org/", "publications": null, "products": null, "taxon": null, "date_released": "2017-10-05T01:00:16", "date_created": "2017-10-05T01:00:16", "home_page": "http://www.bioassayontology.org/", "version": "2.3.3", "has_ontology_language": "OWL", "nb_classes": 7125, "nb_individuals": 1, "nb_properties": 223, "max_depth": 13, "max_children": 178, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BAO-GPCR", "name": "G Protein-Coupled Receptor BioAssays Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 182, "download_url": "media/ontologies/BAO-GPCR/23/bao-gpcr.owl", "submission_id": 23, "domain": null, "description": "The G protein-coupled receptors (GPCRs) ontology (http://www.bioassayontology.org/bao_gpcr) describes pharmacology, biochemistry and physiology of these important and therapeutically promising class of academic and pharmaceutical research targets. Incorporation and comparison of various small molecule screening data sets, such as those deposited in PubChem, ChEMBL, KEGG, PDSP, and/or IUPHAR databases, requires a formalized electronic organization system. In order to bridge the gap between the overflow of HTS data and the bottleneck of integrated analysis tools, herein, we provide the first comprehensive GPCR ontology. The development and utility of GPCR ontology was based on previously developed BioAssay Ontology (BAO). The GPCR ontology contains information about biochemical, pharmacological, and functional properties of individual GPCRs as well as GPCR-selective ligands inclusive of their HTS screening results and other records. This provides the first all-inclusive GPCR ontology with all available data to model the relationship between the GPCR binding sites and their physiologic and pharmacologic role in physiology via small molecule chemical structures. We developed this system using emerging semantic technologies, by leveraging existing and descriptive domain level ontologies.", "documentation": "https://github.com/BioAssayOntology", "publication": "http://www.schurerlab.org/home/publications", "publications": null, "products": null, "taxon": null, "date_released": "2013-10-28T23:31:51", "date_created": "2013-10-28T23:31:54", "home_page": "http://www.bioassayontology.org/", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 904, "nb_individuals": 345, "nb_properties": 36, "max_depth": 4, "max_children": 321, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BCI-O", "name": "Brain-Computer Interaction (BCI) Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 1557, "download_url": "media/ontologies/BCI-O/6/bci-o.owl", "submission_id": 6, "domain": null, "description": "The BCI ontology specifies a foundational metadata model set for real-world multimodal Brain-Computer Interaction (BCI) data capture activities. Its structure depicts a conceptual framework that BCI applications can extend and use in their implementations, to define core concepts that capture a relevant and interoperable metadata vocabulary.\r\n\r\nThis ontology is aligned to the Semantic Sensor Network Ontology (SSN): a domain-independent and end-to-end model for sensor/actuator applications. Hence, its structure has been normalized to assist its use in conjunction with other ontologies or linked data resources to specify any particular definitions (such as units of measurement, time and time series, and location and mobility), that specialized applications in the BCI domain might need.\r\n\r\nIts spec provides general alignment data modeling guidelines for core concepts, to help BCI applications in their design.", "documentation": "https://w3id.org/BCI-ontology#", "publication": "https://github.com/perma-id/w3id.org/tree/master/BCI-ontology", "publications": null, "products": null, "taxon": null, "date_released": "2018-06-07T01:00:18", "date_created": "2018-06-07T01:00:36", "home_page": "http://lov.okfn.org/dataset/lov/vocabs/bci", "version": "0.9.6", "has_ontology_language": "OWL", "nb_classes": 179, "nb_individuals": 2, "nb_properties": 253, "max_depth": 7, "max_children": 27, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d9", "name": "ICF-d9. COMMUNITY, SOCIAL AND CIVIC LIFE", "status": "Classified", "topics": null, "species": null, "submission": { "id": 495, "download_url": "media/ontologies/ICF-d9/1/icf-d9.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 9: COMMUNITY, SOCIAL AND CIVIC LIFE\" (d9) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:44:55", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 52, "nb_individuals": 2437, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BIOMO", "name": "Biological Observation Matrix Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 320, "download_url": "media/ontologies/BIOMO/1/biomo.owl", "submission_id": 1, "domain": null, "description": "The BIOMO ontology maps the HDF5 based BIOM format (http://biom-format.org/) to OWL, offering a method to convert a BIOM file to RDF and therefore publish it as Linked Data", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-07-29T00:00:00", "date_created": "2014-07-29T16:06:38", "home_page": "http://github.com/mikel-egana-aranguren/biom-ld", "version": "0.0.1\n", "has_ontology_language": "OWL", "nb_classes": 1534, "nb_individuals": 0, "nb_properties": 221, "max_depth": 10, "max_children": 118, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ModSci", "name": "Modern Science Ontology", "status": "Unloadable", "topics": [ "ModSci models relationships between modern science branches and related entities", "such as scientific discoveries", "renowned scientists", "instruments", "phenomena ... etc." ], "species": [], "submission": { "id": 3187, "download_url": "media/ontologies/ModSci/2/modsci.owl", "submission_id": 2, "domain": null, "description": "Modern Science Ontology (ModSci), for modeling relationships between modern science branches and related entities, such as scientific discoveries, phenomena, renowned scientists, instruments, etc. ModSci is an upper ontology that provides a unifying framework for the various domain ontologies that make up the Science Knowledge Graph Ontology Suite. The Systematic Approach for Building Ontologies (SABiO) has been followed in the development of ModSci. ModSci is a poly-hierarchical ontology that can be utilized in semantic web applications. ModSci powers two projects for semantically representing scholarly information: Open Research Knowledge Graph (for the categorization of research papers) and OpenResearch.org (for the categorization of the information about scientific events, research projects, scientific papers, publishers, and journals).", "documentation": "https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-12-19T14:12:41.595604", "date_created": "2019-12-19T14:12:41.595572", "home_page": "https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 264, "nb_individuals": 130, "nb_properties": 103, "max_depth": 4, "max_children": 38, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD9CM", "name": "International Classification of Diseases, Version 9 - Clinical Modification", "status": "Unloadable", "topics": [], "species": [], "submission": { "id": 170, "download_url": "media/ontologies/ICD9CM/11/icd9cm.umls", "submission_id": 11, "domain": null, "description": "The ICD is the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:56", "date_created": "2017-02-06T21:25:56", "home_page": "http://www.cms.hhs.gov/", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 22533, "nb_individuals": 0, "nb_properties": 8, "max_depth": 6, "max_children": 21, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IDODEN", "name": "Dengue Fever Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 299, "download_url": "media/ontologies/IDODEN/6/idoden.owl", "submission_id": 6, "domain": null, "description": "An ontology for dengue fever.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-12T07:00:00", "date_created": "2014-02-17T13:29:24", "home_page": "http://code.google.com/p/dengue-fever-ontology/", "version": "0.15b", "has_ontology_language": "OWL", "nb_classes": 5019, "nb_individuals": 0, "nb_properties": 23, "max_depth": 18, "max_children": 1389, "avg_children": 10, "classifiable": true, "nb_inconsistent": 16, "indexed": true, "md5sum": null } }, { "acronym": "NMOBR_2", "name": "NeuroMorpho.Org Hierarchies for browsing", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 865, "download_url": "media/ontologies/NMOBR_2/6/nmobr_2.owl", "submission_id": 6, "domain": null, "description": "NeuroMorpho.Org v7.0 Ontologies for human readability.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T02:12:11", "date_created": "2017-11-28T02:12:11", "home_page": null, "version": "2.2", "has_ontology_language": "OWL", "nb_classes": 2394, "nb_individuals": 1117, "nb_properties": 2, "max_depth": 40, "max_children": 408, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NMOCT", "name": "NeuroMorpho.Org cell type ontologies", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 882, "download_url": "media/ontologies/NMOCT/5/nmoct.owl", "submission_id": 5, "domain": null, "description": "A hierarchy of several neuron description dimensions including circuit type, morphology, neurotransmitter, and functional properties. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T02:12:12", "date_created": "2017-11-28T02:12:12", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 428, "nb_individuals": 413, "nb_properties": 0, "max_depth": 4, "max_children": 251, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BRO-AreaOfResearch", "name": "Biomedical Resource Ontology - Area of Research View", "status": "Classified", "topics": null, "species": null, "submission": { "id": 612, "download_url": "media/ontologies/BRO-AreaOfResearch/2/bro-areaofresearch.owl", "submission_id": 2, "domain": null, "description": "This view represents a subset of the BRO containing all the Area of Research classes that are relevant in the biomedical domain.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-17T07:00:00", "date_created": "2010-06-28T03:25:11", "home_page": "http://www.biositemaps.org/", "version": "3.1", "has_ontology_language": "OWL", "nb_classes": 22, "nb_individuals": 1, "nb_properties": 45, "max_depth": 1, "max_children": 19, "avg_children": 11, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BRO-Chinese", "name": "Biomedical Resource Ontology with Simplified Chinese annotations.", "status": "Classified", "topics": null, "species": null, "submission": { "id": 390, "download_url": "media/ontologies/BRO-Chinese/1/bro-chinese.owl", "submission_id": 1, "domain": null, "description": "This view contains the entire BRO with the addition of three DataType properties, i.e., preferredName, shortName and synonym; then for all the classes and properties, Simplified Chinese (and some English) annotations were inserted into the ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-02-24T08:00:00", "date_created": "2009-10-06T22:25:54", "home_page": null, "version": "2.5", "has_ontology_language": "OWL", "nb_classes": 311, "nb_individuals": 0, "nb_properties": 39, "max_depth": 9, "max_children": 13, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BRODMANNH", "name": "NeuroMorpho.Org Brodmann areas", "status": "Classified", "topics": null, "species": null, "submission": { "id": 868, "download_url": "media/ontologies/BRODMANNH/4/brodmannh.owl", "submission_id": 4, "domain": null, "description": "A hierarchy of Neocortex Brodmann areas.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T02:00:26", "date_created": "2017-11-28T02:00:26", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 20, "nb_individuals": 21, "nb_properties": 0, "max_depth": 2, "max_children": 19, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BRSO", "name": "Biological Resource Schema Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4787, "download_url": "media/ontologies/BRSO/1/brso.owl", "submission_id": 1, "domain": null, "description": "Biological Resource Schema Ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-12-20T00:00:00", "date_created": "2021-12-21T05:34:45", "home_page": "https://github.com/dbcls/brso", "version": "0.02", "has_ontology_language": "OWL", "nb_classes": 15, "nb_individuals": 9, "nb_properties": 8, "max_depth": 2, "max_children": 14, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BSAO", "name": "Botryllus schlosseri anatomy and development ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 536, "download_url": "media/ontologies/BSAO/1/bsao.obo", "submission_id": 1, "domain": null, "description": "The first ontology describing the anatomy and the development of Botryllus schlosseri.\r\nWorking group : Lucia Manni, Fabio Gasparini, Kohji Hotta, Katherine J. Ishizuka J, Lorenzo Ricci, Stefano Tiozzo, Ayelet Voskoboynik, Delphine Dauga", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-06-27T07:00:00", "date_created": "2013-08-29T09:04:07", "home_page": "", "version": "Version 1", "has_ontology_language": "OBO", "nb_classes": 104, "nb_individuals": 0, "nb_properties": 6, "max_depth": 0, "max_children": 8, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BSPO", "name": "Biological Spatial Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5826, "download_url": "media/ontologies/BSPO/31/bspo.owl", "submission_id": 31, "domain": "anatomy and development", "description": "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/25140222", "title": "Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology." } ], "products": [ { "id": "bspo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/bspo.owl" }, { "id": "bspo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/bspo.obo" } ], "taxon": null, "date_released": "2023-05-29T12:01:49.764354", "date_created": "2023-05-29T12:01:49.764370", "home_page": "https://github.com/obophenotype/biological-spatial-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 170, "nb_individuals": 18, "nb_properties": 172, "max_depth": 9, "max_children": 23, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "e81b08fb6d9f221e321de5391f856abd" } }, { "acronym": "BT", "name": "BioTop Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 468, "download_url": "media/ontologies/BT/12/bt.owl", "submission_id": 12, "domain": null, "description": "A top-domain ontology that provides definitions for the foundational entities of biomedicine as a basic vocabulary to unambiguously describe facts in this domain.", "documentation": "http://purl.org/biotop", "publication": "http://purl.org/biotop", "publications": null, "products": null, "taxon": null, "date_released": "2016-10-23T01:00:31", "date_created": "2016-10-23T01:00:32", "home_page": "http://purl.org/biotop", "version": "Last modification\nApr 24, 2012 by Stefan Schulz", "has_ontology_language": "OWL", "nb_classes": 390, "nb_individuals": 0, "nb_properties": 83, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BTO_ONTOLOGY", "name": "Brain Tumour Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3585, "download_url": "media/ontologies/BTO_ONTOLOGY/1/bto_ontology.owl", "submission_id": 1, "domain": null, "description": "The purpose of this work is to develop an ontology-based framework for developing an information retrieval system to cater to specific queries of users. For creating such an ontology, information was obtained from a wide range of information sources involved with brain tumour study and research. The information thus obtained was compiled and analysed to provide a standard, reliable and relevant information base to aid our proposed system. Facet-based methodology has been used for ontology formalization for quite some time. Ontology formalization involves different steps such as identification of the terminology, analysis, synthesis, standardization and ordering. A vast majority of the ontologies being developed nowadays lack flexibility. This becomes a formidable constraint when it comes to interoperability. We found that a facet-based method provides a distinct guideline for the development of a robust and flexible model concerning the domain of brain tumours. Our attempt has been to bridge library and information science and computer science, which itself involved an experimental approach. It was discovered that a faceted approach is really enduring, as it helps in the achievement of properties like navigation, exploration and faceted browsing. Computer-based brain tumour ontology supports the work of researchers towards gathering information on brain tumour research and allows users across the world to intelligently access new scientific information quickly and efficiently.", "documentation": "https://github.com/subhashishhh/BTO-Ontology", "publication": "Das, Subhashis, and Sayon Roy. \"Faceted Ontological Model for Brain Tumour Study.\" KO KNOWLEDGE ORGANIZATION 43, no. 1 (2016): 3-12.", "publications": null, "products": null, "taxon": null, "date_released": "2016-01-01T00:00:00", "date_created": "2020-05-04T09:51:06", "home_page": "https://github.com/subhashishhh/BTO-Ontology/blob/master/BrainTumour_ontology.owl", "version": "1", "has_ontology_language": "OWL", "nb_classes": 28, "nb_individuals": 146, "nb_properties": 9, "max_depth": 4, "max_children": 11, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CANONT", "name": "Upper-Level Cancer Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 82, "download_url": "media/ontologies/CANONT/1/canont.obo", "submission_id": 1, "domain": null, "description": "Providing an upper-level ontology for cancer.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-11-20T08:00:00", "date_created": "2012-11-20T13:39:03", "home_page": null, "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 56, "nb_individuals": 0, "nb_properties": 0, "max_depth": 9, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IDOMAL", "name": "Malaria Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3366, "download_url": "media/ontologies/IDOMAL/187/idomal.owl", "submission_id": 187, "domain": "health", "description": "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "idomal.owl", "ontology_purl": "http://purl.obolibrary.org/obo/idomal.owl" } ], "taxon": null, "date_released": "2020-02-24T17:38:47.582359", "date_created": "2020-02-24T17:38:47.582402", "home_page": "https://www.vectorbase.org/ontology-browser", "version": null, "has_ontology_language": "OWL", "nb_classes": 3159, "nb_individuals": 595, "nb_properties": 16, "max_depth": 17, "max_children": 516, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "33f8a68a6e25a61e1114ae8f364ba3ca" } }, { "acronym": "IDQA", "name": "Image and Data Quality Assessment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 417, "download_url": "media/ontologies/IDQA/8/idqa.obo", "submission_id": 8, "domain": null, "description": "Image and Data Quality Assessment for scientific data management", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-08-25T07:00:00", "date_created": "2013-12-05T22:14:47", "home_page": "http://idqa.wordpress.com", "version": "v50", "has_ontology_language": "OBO", "nb_classes": 260, "nb_individuals": 0, "nb_properties": 2, "max_depth": 8, "max_children": 18, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NXDX", "name": "Test NXDX", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4587, "download_url": "media/ontologies/NXDX/1/nxdx.owl", "submission_id": 1, "domain": null, "description": "A test for ontology submission", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-08-09T00:00:00", "date_created": "2021-08-10T06:16:09", "home_page": null, "version": "2021/8/10", "has_ontology_language": "OWL", "nb_classes": 397, "nb_individuals": 54, "nb_properties": 18, "max_depth": 9, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IMGT-ONTOLOGY", "name": "Immunogenetics Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 311, "download_url": "media/ontologies/IMGT-ONTOLOGY/4/imgt-ontology.owl", "submission_id": 4, "domain": null, "description": "IMGT-ONTOLOGY is the first ontology for immunogenetics and immunoinformatics. It provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics and manages the related knowledge, thus allowing the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. \r\nIMGT-ONTOLOGY manages the knowledge through diverse facets relying on seven axioms, \"IDENTIFICATION\", \"CLASSIFICATION\", \"DESCRIPTION\", \"NUMEROTATION\", \"LOCALIZATION\", \"ORIENTATION\" and \"OBTENTION\". These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized. The axioms constitute the Formal IMGT-ONTOLOGY, also designated as IMGT-Kaleidoscope. As the same axioms can be used to generate concepts for multi-scale level approaches, the Formal IMGT-ONTOLOGY represents a paradigm for system biology ontologies, which need to identify, to classify, to describe, to number, to localize and to orientate objects, processes and relations at the molecule, cell, tissue, organ, organism or population levels.\r\nIMGT®, the international ImMunoGeneTics information system®, has been built on IMGT-ONTOLOGY.\r\n\r\nThe version 1.0.2 of IMGT-ONTOLOGY includes the concepts of IDENTIFICATION and the concepts of CLASSIFICATION.", "documentation": "http://www.imgt.org/IMGTindex/ontology.php", "publication": "http://www.imgt.org/IMGTindex/ontology.php", "publications": null, "products": null, "taxon": null, "date_released": "2013-07-17T07:00:00", "date_created": "2013-07-17T15:30:29", "home_page": "http://www.imgt.org/", "version": "1.0.2", "has_ontology_language": "OWL", "nb_classes": 1415, "nb_individuals": 0, "nb_properties": 42, "max_depth": 8, "max_children": 61, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IFAR", "name": "Fanconi Anemia Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 720, "download_url": "media/ontologies/IFAR/5/ifar.owl", "submission_id": 5, "domain": null, "description": "An application ontology devoted to the standardized recording of data related to Fanconi Anemia (FA). This ontology was created using an OWL file provided by Dr. Ada Hamish (and Francois Schiettecatte) at the Centers for Mendelian Genetics, with their permission. Their original ontology can be found at: http://phenodb.net/help/features. Modifications were made using HPO, OMIM, NCI, and SNOMED. Novel classes pertaining to FA were added and defined as appropriate. ", "documentation": "http://lab.rockefeller.edu/smogorzewska/ifar/", "publication": "http://lab.rockefeller.edu/smogorzewska/ifarpublications", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-26T07:00:00", "date_created": "2014-02-18T21:35:25", "home_page": "http://lab.rockefeller.edu/smogorzewska/ifar/", "version": "3", "has_ontology_language": "OWL", "nb_classes": 4530, "nb_individuals": 0, "nb_properties": 0, "max_depth": 9, "max_children": 80, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ILLNESSINJURY", "name": "Illness and Injury", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1670, "download_url": "media/ontologies/ILLNESSINJURY/1/illnessinjury.owl", "submission_id": 1, "domain": null, "description": "This list of Illness and Injury (Morbidity and Mortality) classifications is an abbreviated version of the World Health Organization's (WHO) Startup Mortality List (ICD-10-SMoL). ICD-10-SMoL is the WHO's application of ICD-10 for low-resource settings initial cause of death collection.\r\n\r\nICD-10-SMoL was chosen because it is a simplified version of the ICD-10.\r\nICD (International Classification of Diseases) \"is the foundation for the identification of health trends and statistics globally, and the international standard for reporting diseases and health conditions. It is the diagnostic classification standard for all clinical and research purposes. ICD defines the universe of diseases, disorders, injuries and other related health conditions\" [http://www.who.int/classifications/icd/en/].\r\n\r\nVersion 1.0 of this ontology was compiled for the Canadian Writing Research Collaboratory (CWRC) ontology project and reflects the need to have causes of death and health issues organized in a way to allow for analysis of cultural data. A simplified list was deemed sufficient since the domain under study (cultural documents) will not have detailed medical information with regards to cause of death or health issues. But instead of accepting a list of general usage terms for causes of death or health issues that appear in some sources (e.g. Wikipedia, Wikidatak, etc.), a standardized, medical classification was selected so that it could be of use for future analysis regarding questions involving the intersection of health and culture.\r\n\r\nICD-10-SMoL was chosen since it was the latest version of this list (June, 2018). A stable version of ICD-11 was to be available in June 2018 but there was no ICD-11-SMoL available at this time.\r\n\r\nTo obtain the ICD10-SMoL:\r\nhttp://www.who.int/healthinfo/civil_registration/ICD_10_SMoL.pdf?ua=1", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-07-22T00:00:00", "date_created": "2018-07-22T21:52:48", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 21, "nb_individuals": 141, "nb_properties": 0, "max_depth": 2, "max_children": 20, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INBIO", "name": "Invasion Biology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7195, "download_url": "media/ontologies/INBIO/3/inbio.owl", "submission_id": 3, "domain": null, "description": "The Invasion Biology Ontology (INBIO) contains terms and concepts relevant in the field of invasion biology, which is a research area dealing with the translocation, establishment, spread, impact and management of species outside of their native ranges, where they are called non-native or alien species. This first version of the ontology covers terms and concepts needed to describe twelve major invasion hypotheses building the hierarchical hypothesis network (see also Jeschke JM, Heger T (Eds) (2018) Invasion Biology: Hypotheses and Evidence. CABI, Wallingford, UK).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-02-14T00:00:00", "date_created": "2025-02-13T09:10:13", "home_page": null, "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 495, "nb_individuals": 10, "nb_properties": 107, "max_depth": 30, "max_children": 34, "avg_children": 19, "classifiable": true, "nb_inconsistent": 34, "indexed": true, "md5sum": null } }, { "acronym": "NGSONTO", "name": "NGS ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 238, "download_url": "media/ontologies/NGSONTO/32/ngsonto.owl", "submission_id": 32, "domain": null, "description": "The NGSOnto ontology aims at capturing the workflow of all the processes involved in a Next Generation Sequencing, in order to ensure the reproducibility of the entire process, through the use of a controled and specific vocabulary. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-03-12T00:00:00", "date_created": "2017-03-13T16:08:48", "home_page": null, "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 94, "nb_individuals": 0, "nb_properties": 52, "max_depth": 7, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INBIODIV", "name": "An Ontology for Indian Biodiversity Knowledge Management", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4645, "download_url": "media/ontologies/INBIODIV/1/inbiodiv.owl", "submission_id": 1, "domain": null, "description": "InBiodiv-O: An Ontology for Indian Biodiversity Knowledge Management \r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-25T00:00:00", "date_created": "2021-06-25T20:15:51", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 628, "nb_individuals": 3, "nb_properties": 18, "max_depth": 8, "max_children": 51, "avg_children": 32, "classifiable": true, "nb_inconsistent": 36, "indexed": true, "md5sum": null } }, { "acronym": "INCENTIVE", "name": "INCENTIVE Community Controlled Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6359, "download_url": "media/ontologies/INCENTIVE/7/incentive.skos", "submission_id": 7, "domain": null, "description": "DEMO vocabulary only! Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is INCENTIVE Controlled Vocabulary. This controlled vocabulary is a result of Metadata 4 Machine (M4M) Workshop 18 and 22 (M4M.18 and M4M.22) provided to the INCENTIVE community.\r\n\r\nsheet2rdf and OntoStack are used to build and serve INCENTIVE Controlled Vocabulary, while PURL is used to persist identifiers for the vocabulary terms.", "documentation": "https://www.gofairfoundation.org/m4m/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-23T00:00:00", "date_created": "2024-01-28T12:51:21", "home_page": "https://raw.githubusercontent.com/gofair-foundation/vocabs_archive/main/M4M22.ttl", "version": "0.1.3", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 82, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INCENTIVE-VARS", "name": "INCENTIVE Variables", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6222, "download_url": "media/ontologies/INCENTIVE-VARS/9/incentive-vars.skos", "submission_id": 9, "domain": null, "description": "Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is INCENTIVE Variables. This controlled vocabulary is a result of Metadata 4 Machine (M4M) Workshop 18 (M4M.18) provided to the INCENTIVE community (https://zenodo.org/communities/incentive/about/).\r\n\r\nsheet2rdf and OntoStack, developed by FAIR Data Collective, are used to build and serve INCENTIVE Variable, while PURL is used to persist identifiers for the vocabulary terms and properties:\r\n\r\nhttp://purl.org/incentive/variables/", "documentation": "https://github.com/fair-data-collective/M4M18-vocabulary", "publication": "https://zenodo.org/communities/incentive/about/", "publications": null, "products": null, "taxon": null, "date_released": "2023-11-24T02:06:01", "date_created": "2023-11-24T02:06:02", "home_page": "https://github.com/fair-data-collective/M4M18-vocabulary", "version": "0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 82, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO19115", "name": "ISO 19115", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 278, "download_url": "media/ontologies/ISO19115/2/iso19115.owl", "submission_id": 2, "domain": null, "description": "ISO19115:2003", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-24T02:06:40", "date_created": "2017-02-24T02:06:40", "home_page": null, "version": "2014", "has_ontology_language": "OWL", "nb_classes": 194, "nb_individuals": 291, "nb_properties": 315, "max_depth": 4, "max_children": 74, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BRO", "name": "Biomedical Resource Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 66, "download_url": "media/ontologies/BRO/14/bro.owl", "submission_id": 14, "domain": null, "description": "A controlled terminology of resources, which is used to improve the sensitivity and specificity of web searches.", "documentation": "http://www.ncbcs.org/biositemaps/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-08-31T07:00:00", "date_created": "2010-08-31T20:09:49", "home_page": "http://www.ncbcs.org/biositemaps/", "version": "3.2.1", "has_ontology_language": "OWL", "nb_classes": 488, "nb_individuals": 52, "nb_properties": 64, "max_depth": 7, "max_children": 65, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CANCO", "name": "Cancer Chemoprevention Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 136, "download_url": "media/ontologies/CANCO/3/canco.owl", "submission_id": 3, "domain": null, "description": "The Cancer Chemoprevention Ontology constitutes a vocabulary that is able to describe and semantically interconnect the different paradigms of the cancer chemoprevention domain.", "documentation": null, "publication": "http://www.semantic-web-journal.net/content/collaborative-development-common-semantic-model-interlinking-cancer-chemoprevention-linked-d", "publications": null, "products": null, "taxon": null, "date_released": "2013-05-01T07:00:00", "date_created": "2013-05-01T16:16:39", "home_page": null, "version": "0.3", "has_ontology_language": "OWL", "nb_classes": 127, "nb_individuals": 13, "nb_properties": 93, "max_depth": 8, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "INFRARISK", "name": "InfraRisk Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4274, "download_url": "media/ontologies/INFRARISK/1/infrarisk.owl", "submission_id": 1, "domain": null, "description": "The InfraRisk Ontology: Enabling Semantic Interoperability for Critical Infrastructures at Risk from Natural Hazards. This InfraRisk ontology may be used for representing relevant information about natural hazard events and their impact on infrastructure components. Earthquakes, landslides, and other natural hazard events have severe negative socio-economic impacts.", "documentation": "http://dx.doi.org/10.1007/978-3-319-69459-7_31", "publication": "http://dx.doi.org/10.1007/978-3-319-69459-7_31", "publications": null, "products": null, "taxon": null, "date_released": "2016-03-01T00:00:00", "date_created": "2021-02-11T12:50:55", "home_page": "https://www.infrarisk-fp7.eu", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 33, "nb_individuals": 1, "nb_properties": 12, "max_depth": 5, "max_children": 7, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "BTO", "name": "BRENDA tissue / enzyme source", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4653, "download_url": "media/ontologies/BTO/39/bto.owl", "submission_id": 39, "domain": "anatomy", "description": "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/21030441", "title": "The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources" } ], "products": [ { "id": "bto.owl", "ontology_purl": "http://purl.obolibrary.org/obo/bto.owl" }, { "id": "bto.obo", "ontology_purl": "http://purl.obolibrary.org/obo/bto.obo" }, { "id": "bto.json", "ontology_purl": "http://purl.obolibrary.org/obo/bto.json" } ], "taxon": null, "date_released": "2021-11-01T12:24:47.095037", "date_created": "2021-11-01T12:24:47.095060", "home_page": "http://www.brenda-enzymes.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 6569, "nb_individuals": 0, "nb_properties": 10, "max_depth": 7, "max_children": 2264, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "bace9597267f0b286b58d4b5c2039f55" } }, { "acronym": "CHEAR", "name": "Children's Health Exposure Analysis Resource", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 38, "download_url": "media/ontologies/CHEAR/5/chear.owl", "submission_id": 5, "domain": null, "description": "Children's health and wellbeing are influenced by interactions between environmental and genetic factors. NIEHS is establishing an infrastructure, the Children's Health Exposure Analysis Resource (CHEAR), to provide the extramural research community access to laboratory and data analyses that add or expand the inclusion of environmental exposures in children's health research. The goal of CHEAR is to provide tools so researchers can assess the full range of environmental exposures which may affect children's health. We anticipate that CHEAR will be used by children's health researchers conducting epidemiological or clinical studies that currently have limited consideration of environmental exposures, or those who have collected exposure data but seek more extensive analyses.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-05-22T00:00:00", "date_created": "2017-07-17T22:11:01", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 10469, "nb_individuals": 38, "nb_properties": 741, "max_depth": 34, "max_children": 190, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NDDRFO", "name": "Neurodegenerative Disease Risk Factor Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7795, "download_url": "media/ontologies/NDDRFO/3/nddrfo.owl", "submission_id": 3, "domain": null, "description": "Neurodegenerative Diseases Risk Factor Ontology (NDDRFO) is a disease-specific ontology that characterizes the knowledge field of risk factors for neurodegenerative diseases.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-07T00:00:00", "date_created": "2025-12-07T00:00:00", "home_page": null, "version": "V1.0.0", "has_ontology_language": "OWL", "nb_classes": 855, "nb_individuals": 12, "nb_properties": 7, "max_depth": 9, "max_children": 414, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIRS", "name": "Non-invasive Respiratory Support Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7894, "download_url": "media/ontologies/NIRS/2/nirs.owl", "submission_id": 2, "domain": null, "description": "Managing patients with respiratory failure increasingly involves non-invasive respiratory support (NIRS) strategies as alternatives to traditional ventilation methods. However, despite the rapidly expanding use of NIRS, there is a significant challenge to its best use under all medical circumstances. It lacks a unified ontological structure, complicating guidance on NIRS modalities across healthcare systems. We introduced this NIRS ontology study to support knowledge representation in acute care settings by providing a unified framework that enhances data clarity, interoperability, and clinical decision-making. We developed this NIRS ontology using the Web Ontology Language (OWL) and Protégé to organize clinical concepts and relationships. To enable rule-based clinical reasoning beyond hierarchical structures, we added Semantic Web Rule Language (SWRL) rules. We evaluated logical reasoning by adding 17 hypothetical clinical scenarios. We used SPARQL queries to retrieve and test targeted inferences. The ontology has 129 classes, 11 object properties, and 17 data properties across 886 axioms that establish concept relationships. To standardize clinical concepts, we added 361 annotations, including descriptive definitions based on controlled vocabularies.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-01-19T00:00:00", "date_created": "2026-01-19T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 145, "nb_individuals": 26, "nb_properties": 11, "max_depth": 5, "max_children": 14, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NPO", "name": "NanoParticle Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 620, "download_url": "media/ontologies/NPO/31/npo.owl", "submission_id": 31, "domain": null, "description": "An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.", "documentation": "http://www.nano-ontology.org", "publication": "http://www.nano-ontology.org", "publications": null, "products": null, "taxon": null, "date_released": "2011-02-12T08:00:00", "date_created": "2012-08-17T13:25:54", "home_page": "http://www.nano-ontology.org", "version": "2011-12-08 (yyyy-mm-dd)", "has_ontology_language": "OWL", "nb_classes": 1904, "nb_individuals": 0, "nb_properties": 81, "max_depth": 16, "max_children": 112, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NRO", "name": "NeuralReprogrammingOntology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5401, "download_url": "media/ontologies/NRO/1/nro.owl", "submission_id": 1, "domain": null, "description": "The neural reprogramming ontology encompasses the domain of neural regenerative cell reprogramming knowledge. As research progresses, researchers and specialists in the field of reprogramming could continue to expand the bounds of this foundation, so adding to its depth.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-10-10T00:00:00", "date_created": "2022-09-26T02:24:29", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 563, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 95, "avg_children": 42, "classifiable": true, "nb_inconsistent": 45, "indexed": true, "md5sum": null } }, { "acronym": "NLN", "name": "NLighten Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 2678, "download_url": "media/ontologies/NLN/1/nln.owl", "submission_id": 1, "domain": null, "description": "The NLighten ontology is an ontology designed to model clinical research/trials educational resourcses. It includes a model of educational resources and a taxonomy of clinical research competencies. The educational resource model reuses many schema.org concepts, the taxonomy is based on a variety of domain competency frameworks, and the ontology is designed to work with the eagle-i software platform. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-03-08T00:00:00", "date_created": "2019-06-19T21:35:21", "home_page": "https://github.com/NLightenGroup/nlighten-ontology", "version": "2018-02-28", "has_ontology_language": "OWL", "nb_classes": 411, "nb_individuals": 23, "nb_properties": 59, "max_depth": 8, "max_children": 36, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NPDX", "name": "Neuropathologic Diagnoses", "status": "Incoherent", "topics": null, "species": null, "submission": { "id": 8095, "download_url": "media/ontologies/NPDX/1/npdx.owl", "submission_id": 1, "domain": null, "description": "NPDX Ontology, alpha version for testing - DHOAKLEY", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-04-03T00:00:00", "date_created": "2026-04-03T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 795, "nb_individuals": 0, "nb_properties": 1, "max_depth": 3, "max_children": 756, "avg_children": 681, "classifiable": true, "nb_inconsistent": 756, "indexed": true, "md5sum": null } }, { "acronym": "LDBASE", "name": "LDbase", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6599, "download_url": "media/ontologies/LDBASE/2/ldbase.skos", "submission_id": 2, "domain": null, "description": "LDbase is an NIH-funded behavioral research data repository. The LDbase taxonomy includes project descriptors for projects in the fields of educational and developmental sciences. Developed as a collaboration between researchers and librarians, this first-of-its-kind project-oriented data repository contains decades of knowledge and includes data on individuals across the full range of abilities. The LDbase ontology is used to describe research projects in the developmental sciences. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-02-27T00:00:00", "date_created": "2024-05-07T17:01:01", "home_page": "LDbase.org", "version": "0.0.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 636, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LEPAO", "name": "Lepidoptera Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5667, "download_url": "media/ontologies/LEPAO/2/lepao.owl", "submission_id": 2, "domain": "anatomy and development", "description": "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. LEPAO is developed in part by BIOfid (The Specialised Information Service Biodiversity Research).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "lepao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/lepao.owl" }, { "id": "lepao.obo", "ontology_purl": "http://purl.obolibrary.org/obo/lepao.obo" } ], "taxon": null, "date_released": "2023-02-20T12:24:46.472915", "date_created": "2023-02-20T12:24:46.472930", "home_page": "https://github.com/insect-morphology/lepao", "version": null, "has_ontology_language": "OWL", "nb_classes": 822, "nb_individuals": 0, "nb_properties": 57, "max_depth": 8, "max_children": 71, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "2ebe95b84326be82c7b18cfdae8a2cec" } }, { "acronym": "LICO", "name": "Liver Case Ontology (LiCO)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4045, "download_url": "media/ontologies/LICO/2/lico.owl", "submission_id": 2, "domain": null, "description": "Liver Case Ontology (LiCO) is a case-centric ontology for liver patient cases called lico (Liver Case Ontology) that integrates several ontologies and lexicons developed for sub-disciplines of medicine such as RadLex (Radiology Lexicon), SNOMED CT (Systematized Nomenclature of Medicine, Clinical Terms), LOINC (The Logical Observation Identifier Names and Codes). It is an extension of ONLIRA (Ontology of the Liver for Radiology) that represents the liver and lesions from a radiological perspective.", "documentation": null, "publication": "https://vavlab.boun.edu.tr/publications-patents?field_tags_tid%5B%5D=68&field_tags_tid%5B%5D=70", "publications": null, "products": null, "taxon": null, "date_released": "2018-08-31T00:00:00", "date_created": "2020-11-04T16:59:52", "home_page": null, "version": "changes\n* Segments and Regions are modelling as Classes in order to identify which patient (liver) they belong to.\n* Redundant restrictions are removed\n", "has_ontology_language": "OWL", "nb_classes": 93, "nb_individuals": 0, "nb_properties": 36, "max_depth": 4, "max_children": 24, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "KTAO", "name": "Kidney Tissue Atlas Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6475, "download_url": "media/ontologies/KTAO/20/ktao.owl", "submission_id": 20, "domain": null, "description": "The Kidney Tissue Atlas Ontology (KTAO) is an ontology that integrates kidney-related cell types, cell states, locations, gene markers, disease, etc., and their relations. KTAO is \r\ndeveloped to support the NIH-NIDDK-funed Kidney Precision Medicine Project (KPMP). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-03-17T01:07:22", "date_created": "2024-03-17T01:07:33", "home_page": "https://github.com/KPMP/KTAO", "version": "Vision Release: 1.0.121", "has_ontology_language": "OWL", "nb_classes": 11211, "nb_individuals": 40, "nb_properties": 399, "max_depth": 38, "max_children": 434, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LABO", "name": "clinical LABoratory Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5535, "download_url": "media/ontologies/LABO/3/labo.owl", "submission_id": 3, "domain": "information", "description": "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.5281/zenodo.6522019", "title": "LABO: An Ontology for Laboratory Test Prescription and Reporting" } ], "products": [ { "id": "labo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/labo.owl" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2022-12-12T12:33:18.402343", "date_created": "2022-12-12T12:33:18.402360", "home_page": "https://github.com/OpenLHS/LABO", "version": null, "has_ontology_language": "OWL", "nb_classes": 169, "nb_individuals": 0, "nb_properties": 33, "max_depth": 9, "max_children": 31, "avg_children": 20, "classifiable": true, "nb_inconsistent": 31, "indexed": true, "md5sum": "b29d5c3eccf778158c823b80df36a782" } }, { "acronym": "LBO", "name": "Livestock Breed Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 611, "download_url": "media/ontologies/LBO/9/lbo.obo", "submission_id": 9, "domain": null, "description": "A vocabulary for buffalo, cattle, chicken, goat, horse, pig, and sheep breeds.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-12T00:00:00", "date_created": "2017-04-12T20:14:30", "home_page": null, "version": "2.2", "has_ontology_language": "OBO", "nb_classes": 1064, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 291, "avg_children": 81, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IPD", "name": "injury process description ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5625, "download_url": "media/ontologies/IPD/2/ipd.owl", "submission_id": 2, "domain": null, "description": "IPD-Onto divides product injury into five unified classes (host, vector, agent, environment, and consequences) and constructs the accident process through the object properties (lead to, touch, accident, etc.)IPD-Onto is used to realise the transformation and reorganisation from product injury to injury information, to reproduce the process of accident occurrence, and realise human-computer interactions to meet the needs of data query.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-01-22T00:00:00", "date_created": "2023-01-22T10:09:37", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 8, "nb_individuals": 5, "nb_properties": 20, "max_depth": 3, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IRD", "name": "Inherited Retinal Dystrophies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3024, "download_url": "media/ontologies/IRD/1/ird.owl", "submission_id": 1, "domain": null, "description": "Inherited retinal dystrophy (IRD) as one of the rare ocular diseases encompasses different types of hereditary retinal degenerations appearing by involvement of the different layers of the posterior ocular segment. In respect of the importance of the classification systems regarding the recorded history of biologic and natural sciences, there is no classification regarding the IRD diagnoses. Therefore, a novel classification for this type of hereditary ocular disease was developed and presented. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-10-21T00:00:00", "date_created": "2019-10-21T19:03:19", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 541, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 83, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IRD1", "name": "Inherited retinal disorders", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4869, "download_url": "media/ontologies/IRD1/1/ird1.owl", "submission_id": 1, "domain": null, "description": "Inherited retinal dystrophy (IRD) as one of the rare ocular diseases encompasses different types of hereditary retinal degenerations appearing by involvement of the different layers of the posterior ocular segment. In respect of the importance of the classification systems regarding the recorded history of biologic and natural sciences, there is no classification regarding the IRD diagnoses. Therefore, a novel classification for this type of hereditary ocular disease was developed and presented.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-01-29T00:00:00", "date_created": "2022-01-29T11:12:17", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 548, "nb_individuals": 0, "nb_properties": 1, "max_depth": 5, "max_children": 383, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IRD2", "name": "Inherited retinal disorders 2", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5415, "download_url": "media/ontologies/IRD2/1/ird2.owl", "submission_id": 1, "domain": null, "description": "Inherited retinal dystrophy (IRD) as one of the rare ocular diseases encompasses different types of hereditary retinal degenerations appearing by involvement of the different layers of the posterior ocular segment. In respect of the importance of the classification systems regarding the recorded history of biologic and natural sciences, there is no classification regarding the IRD diagnoses. Therefore, a novel classification for this type of hereditary ocular disease was developed and presented.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-10-17T00:00:00", "date_created": "2022-10-17T13:36:51", "home_page": null, "version": "2", "has_ontology_language": "OWL", "nb_classes": 548, "nb_individuals": 0, "nb_properties": 1, "max_depth": 5, "max_children": 383, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IRD3", "name": "Inherited retinal dystrophy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5631, "download_url": "media/ontologies/IRD3/1/ird3.owl", "submission_id": 1, "domain": null, "description": "nherited retinal dystrophy (IRD) as one of the rare ocular diseases encompasses different types of hereditary retinal degenerations appearing by involvement of the different layers of the posterior ocular segment. In respect of the importance of the classification systems regarding the recorded history of biologic and natural sciences, there is no classification regarding the IRD diagnoses. Therefore, a novel classification for this type of hereditary ocular disease was developed and presented.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-01-28T00:00:00", "date_created": "2023-01-29T06:08:12", "home_page": null, "version": "3", "has_ontology_language": "OWL", "nb_classes": 163, "nb_individuals": 412, "nb_properties": 0, "max_depth": 4, "max_children": 78, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IRDG", "name": "Data harmonization ontology for cross border malaria surveillance ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1941, "download_url": "media/ontologies/IRDG/1/irdg.owl", "submission_id": 1, "domain": null, "description": "Ontology used to describe the data system in harmonized surveillance system of malaria between french Guiana and Brazil. Developed by the IRD and the Fiocruz.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-10-12T00:00:00", "date_created": "2018-10-12T11:14:09", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 49, "nb_individuals": 0, "nb_properties": 19, "max_depth": 4, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO19115DTC", "name": "ISO 19115 Date Type Code", "status": "Classified", "topics": null, "species": null, "submission": { "id": 754, "download_url": "media/ontologies/ISO19115DTC/1/iso19115dtc.owl", "submission_id": 1, "domain": null, "description": "ISO 19115 Date Type Codes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-17T00:00:00", "date_created": "2017-07-17T19:59:10", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 19, "nb_individuals": 16, "nb_properties": 0, "max_depth": 1, "max_children": 16, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO19115MI", "name": "ISO 19115 Metadata Information", "status": "Classified", "topics": null, "species": null, "submission": { "id": 948, "download_url": "media/ontologies/ISO19115MI/136/iso19115mi.owl", "submission_id": 136, "domain": null, "description": "ISO 19115 Metadata Information section", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-11T04:37:37", "date_created": "2017-12-11T04:37:37", "home_page": null, "version": "2014", "has_ontology_language": "OWL", "nb_classes": 23, "nb_individuals": 0, "nb_properties": 25, "max_depth": 1, "max_children": 22, "avg_children": 22, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO19115ROLES", "name": "ISO 19115 Role Codes", "status": "Classified", "topics": null, "species": null, "submission": { "id": 900, "download_url": "media/ontologies/ISO19115ROLES/6/iso19115roles.skos", "submission_id": 6, "domain": null, "description": "Role Codes for use in ISO 19115-1:2014 metadata", "documentation": "http://geosciml.org/doc/vocabularies", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-09-10T00:00:00", "date_created": "2017-12-02T16:27:35", "home_page": null, "version": "2.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 20, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OCDO", "name": "OCD Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7963, "download_url": "media/ontologies/OCDO/1/ocdo.owl", "submission_id": 1, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-16T00:00:00", "date_created": "2026-02-16T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 80, "nb_individuals": 0, "nb_properties": 14, "max_depth": 4, "max_children": 14, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OC_E", "name": "OntoCaimer_Examples", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7618, "download_url": "media/ontologies/OC_E/1/oc_e.owl", "submission_id": 1, "domain": null, "description": "This version of ontocaimer contains instantiated examples of patients, sensors, and actuators.\r\nOntoCaimer is an ontology that aims to support the development of systems that support and facilitate the care of Alzheimer's patients. This ontology offers a platform that contains concepts related to the support and management of the symptoms suffered by Alzheimer's patients in each of stage of disease, also encompasses knowledge about sensors, observations and actuators. With these knoledge covered, the proposed system can be used as a knowledge base or as a basis for creating artifacts that can interact with the real world.\r\n", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-25T00:00:00", "date_created": "2025-09-25T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 45, "nb_individuals": 165, "nb_properties": 32, "max_depth": 2, "max_children": 28, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO19115TCC", "name": "ISO 19115 Topic Categories", "status": "Classified", "topics": null, "species": null, "submission": { "id": 902, "download_url": "media/ontologies/ISO19115TCC/10/iso19115tcc.owl", "submission_id": 10, "domain": null, "description": "ISO 19115 Topic Category Codes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-21T00:00:00", "date_created": "2017-12-03T00:53:02", "home_page": null, "version": "Created with TopBraid Composer", "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO639-1", "name": "ISO 639-1: Codes for the Representation of Names of Languages - Part 1: Two-letter codes for languages", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5858, "download_url": "media/ontologies/ISO639-1/1/iso639-1.skos", "submission_id": 1, "domain": null, "description": "Language codes from ISO 639-1, as expressed in https://www.w3schools.com/tags/ref_language_codes.asp and converted to SKOS using http://labs.sparna.fr/skos-play/convert. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-10-19T00:00:00", "date_created": "2020-10-19T19:42:28", "home_page": null, "version": "1.0.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 190, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO639-2", "name": "ISO 639-2: Codes for the Representation of Names of Languages", "status": "Classified", "topics": null, "species": null, "submission": { "id": 893, "download_url": "media/ontologies/ISO639-2/3/iso639-2.owl", "submission_id": 3, "domain": null, "description": "ISO 639-2 is part of the ISO 639 language code family, which provides also a two-character code set (ISO 639-1) for the representation of names of languages. ISO 639-2 contains codes for all languages contained in ISO 639-1 and several hundred additional languages. The ISO 639-2 (Bibliographic) codes were devised for use in bibliographic metadata, e.g., for libraries, information services, and publishers, and ISO 639-2 (Terminology) targets terminology, lexicography, and linguistic applications. The lists are the same except for 20 languages that have different Bibliographic and Terminology codes. The list contains over 500 discrete codes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-02T03:04:52", "date_created": "2017-12-02T03:04:52", "home_page": "http://id.loc.gov/vocabulary/iso639-2.html", "version": null, "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 1, "nb_properties": 0, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISO-FOOD", "name": "A formal representation of the knowledge within the domain of Isotopes for Food Science", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1946, "download_url": "media/ontologies/ISO-FOOD/1/iso-food.owl", "submission_id": 1, "domain": null, "description": "To link and harmonize different knowledge repositories with respect to isotopic data, we propose an ISO-FOOD ontology as a domain ontology for describing isotopic data within Food Science. The ISO-FOOD ontology consists of metadata and provenance data that needs to be stored together with data elements in order to describe isotopic measurements with all necessary information required for future analysis. The new domain has been linked with existing ontologies, such as Units of Measurements Ontology, Food, Nutrient and the Bibliographic Ontology. So linked ontology consists of several superclasses, and for each of these the relevant subclasses, object properties and data properties are defined. To show how such an ontology can be used in practice, it was populated with 20 isotopic measurements of Slovenian food samples. Describing data in this way offers a powerful technique for organizing and sharing stable isotope data across Food Science. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-10-22T00:00:00", "date_created": "2018-10-22T11:37:53", "home_page": "http://cs.ijs.si/repository/ISO-FOOD/ISO-FOOD_Ontology.zip", "version": null, "has_ontology_language": "OWL", "nb_classes": 1323, "nb_individuals": 126, "nb_properties": 92, "max_depth": 5, "max_children": 862, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ISPO", "name": "Integrated Ontology for Symptom Phenotype Terminologies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5602, "download_url": "media/ontologies/ISPO/1/ispo.owl", "submission_id": 1, "domain": null, "description": "ISPO delivers an integrated controlled vocabulary for symptom phenotypes, with both clinical and biomedical literature synonyms in Chinese and English languages, it would enhance the semantic interoperability among heterogeneous medical data sources and clinical decision support systems. Furthermore, symptom ontology would propose a standard vocabulary for teasing the symptom-gene associations and thus become a vital requirement for symptom science and TCM biological discovery.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-01-10T00:00:00", "date_created": "2023-01-10T08:46:41", "home_page": "http://www.tcmkg.com/", "version": "2023V1", "has_ontology_language": "OWL", "nb_classes": 3148, "nb_individuals": 0, "nb_properties": 0, "max_depth": 11, "max_children": 51, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ITEMAS", "name": "Medical Technology Innovation in healthcare centers", "status": "Classified", "topics": null, "species": null, "submission": { "id": 830, "download_url": "media/ontologies/ITEMAS/1/itemas.owl", "submission_id": 1, "domain": null, "description": "The defined ontology is focused on addressing medical innovation technology in public healthcare institutions. This ontology is currently only in Spanish language. It has been developed the Platform for Innovation Medical and Health Technology (ITEMAS) a network composed by 67 Spanish healthcare organizations (including hospitals, healthcare centers, Ministry of Health, Social Services and Equality and more than 100 organizations focused on medical technology innovation. The ITEMAS Platform has been by Carlos III National Health Institute (PT13/0006/0036), both co-funded by FEDER from European Regional Development Funds (European Union).", "documentation": "https://drive.google.com/file/d/0B9CVhUu0djsXWkppaXpMdWppeE0/view?usp=sharing", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-16T00:00:00", "date_created": "2017-11-16T09:40:20", "home_page": "www.itemas.org", "version": "1.1.", "has_ontology_language": "OWL", "nb_classes": 135, "nb_individuals": 34, "nb_properties": 144, "max_depth": 6, "max_children": 36, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ITO", "name": "Intelligence Task Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5346, "download_url": "media/ontologies/ITO/17/ito.owl", "submission_id": 17, "domain": null, "description": "The Intelligence Task Ontology and Knowledge Graph (ITO) provides a comprehensive, curated model of artificial intelligence tasks, benchmarks and benchmark results, including the biomedical domain.\r\n\r\nNOTE: The version uploaded to BioPortal has all instances and benchmark data removed because of performance issues with the BioPortal class browser. Please refer to https://github.com/OpenBioLink/ITO/ for downloading the full version of the ontology and dataset.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-09T00:00:00", "date_created": "2022-09-09T08:53:52", "home_page": "https://github.com/OpenBioLink/ITO/", "version": "1.12 (PWC export dated 2022-07-30) - internal, just a minor fix", "has_ontology_language": "OWL", "nb_classes": 16283, "nb_individuals": 37222, "nb_properties": 16, "max_depth": 10, "max_children": 11326, "avg_children": 14, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IXNO", "name": "Interaction Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 164, "download_url": "media/ontologies/IXNO/2/ixno.obo", "submission_id": 2, "domain": null, "description": "The Interaction ontology (IxnO) was developed to enable curation of chemical-gene and chemical-protein interactions for the Comparative Toxicogenomics Database (CTD). CTD is a freely available resource that aims to promote understanding and novel hypothesis development about the effects of the environment on human health.", "documentation": "http://ctd.mdibl.org/reports/CTD_chem_gene_ixn_types.obo", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-01-25T08:00:00", "date_created": "2011-04-21T16:43:51", "home_page": "http://ctd.mdibl.org", "version": "1", "has_ontology_language": "OBO", "nb_classes": 64, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 24, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "JERM", "name": "Just Enough Results Model Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 743, "download_url": "media/ontologies/JERM/15/jerm.owl", "submission_id": 15, "domain": null, "description": "The JERM ontology is an application ontology that describes the relationships between the data, models and other research assets that can be shared through the FAIRDOM platform, for sharing Systems and Synthetic Biology experiments. JERM 2 includes a new model for describing Biosamples, developed during the ELIXIR-lead Biosamples club", "documentation": null, "publication": "https://fair-dom.org/publications/", "publications": null, "products": null, "taxon": null, "date_released": "2017-09-26T00:00:00", "date_created": "2017-09-26T09:55:12", "home_page": "https://fair-dom.org/", "version": "2", "has_ontology_language": "OWL", "nb_classes": 295, "nb_individuals": 0, "nb_properties": 48, "max_depth": 7, "max_children": 16, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "KGCL", "name": "Knowledge Graph Change Language", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7004, "download_url": "media/ontologies/KGCL/9/kgcl.owl", "submission_id": 9, "domain": null, "description": "Knowledge Graph Change Language ontology.", "documentation": "https://incatools.github.io/kgcl/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-11-16T02:11:35", "date_created": "2024-11-16T02:11:38", "home_page": "https://github.com/INCATools/kgcl", "version": "0.1.0", "has_ontology_language": "OWL", "nb_classes": 100, "nb_individuals": 0, "nb_properties": 30, "max_depth": 7, "max_children": 13, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "KISAO", "name": "Kinetic Simulation Algorithm Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7062, "download_url": "media/ontologies/KISAO/37/kisao.owl", "submission_id": 37, "domain": "simulation", "description": "A classification of algorithms for simulating biology, their parameters, and their outputs", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22027554", "title": "Controlled vocabularies and semantics in systems biology" } ], "products": [ { "id": "kisao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/kisao.owl" } ], "taxon": null, "date_released": "2024-12-16T15:08:55.494172", "date_created": "2024-12-16T15:08:55.494175", "home_page": "https://github.com/SED-ML/KiSAO", "version": null, "has_ontology_language": "OWL", "nb_classes": 525, "nb_individuals": 0, "nb_properties": 9, "max_depth": 7, "max_children": 141, "avg_children": 110, "classifiable": true, "nb_inconsistent": 141, "indexed": true, "md5sum": "37a966eed1eda542cdf8df98fd850cc2" } }, { "acronym": "LC-CARRIERS", "name": "Library of Congress Carriers Scheme", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1819, "download_url": "media/ontologies/LC-CARRIERS/3/lc-carriers.skos", "submission_id": 3, "domain": null, "description": "Carriers Scheme is derived from a controlled list of values representing the format of the storage medium and its media type, which is principally used in RDA cataloging.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-05-07T00:00:00", "date_created": "2018-09-09T23:13:05", "home_page": "http://id.loc.gov/vocabulary/carriers.html", "version": null, "has_ontology_language": "SKOS", "nb_classes": 6, "nb_individuals": 56, "nb_properties": 0, "max_depth": 1, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LC-CONTENT", "name": "Library of Congress Content Types Scheme", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4416, "download_url": "media/ontologies/LC-CONTENT/157/lc-content.skos", "submission_id": 157, "domain": null, "description": null, "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-19T01:07:18", "date_created": "2021-04-19T01:07:20", "home_page": "http://id.loc.gov/vocabulary/contentTypes.html", "version": null, "has_ontology_language": "SKOS", "nb_classes": 4, "nb_individuals": 26, "nb_properties": 0, "max_depth": 1, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LCDGT", "name": "Library of Congress Demographic Group Terms", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1639, "download_url": "media/ontologies/LCDGT/2/lcdgt.skos", "submission_id": 2, "domain": null, "description": "The Library of Congress Demographic Group Terms (LCDGT) is designed to describe the characteristics of the intended audiences of resources, and also the creators of, and contributors to, those resources.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-01-01T00:00:00", "date_created": "2018-03-27T16:53:41", "home_page": "http://id.loc.gov/authorities/demographicTerms.html", "version": null, "has_ontology_language": "SKOS", "nb_classes": 4, "nb_individuals": 1, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LCGFT", "name": "Library of Congress Genre/Form Thesaurus for Library and Archival Materials", "status": "Classified", "topics": null, "species": null, "submission": { "id": 404, "download_url": "media/ontologies/LCGFT/3/lcgft.skos", "submission_id": 3, "domain": null, "description": "The Library of Congress Genre/Form Terms for Library and Archival Materials (LCGFT) is a thesaurus that describes what a work is versus what it is about. For instance, the subject heading Horror films, with appropriate subdivisions, would be assigned to a book about horror films. A cataloger assigning headings to the movie The Texas Chainsaw Massacre would also use Horror films, but it would be a genre/form term since the movie is a horror film, not a movie about horror films. The thesaurus combines both genres and forms. Form is defined as a characteristic of works with a particular format and/or purpose. A \"short\" is a particular form, for example, as is \"animation.\" Genre refers to categories of works that are characterized by similar plots, themes, settings, situations, and characters. Examples of genres are westerns and thrillers. In the term Horror films\"horror\" is the genre and \"films\" is the form.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-09-05T00:00:00", "date_created": "2017-09-06T18:47:49", "home_page": "http://id.loc.gov/authorities/genreForms.html", "version": "2017-09-05", "has_ontology_language": "SKOS", "nb_classes": 12, "nb_individuals": 2181, "nb_properties": 0, "max_depth": 0, "max_children": 12, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LCGFT_SKOS", "name": "Library of Congress Genre/Form Terms (SKOS)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1353, "download_url": "media/ontologies/LCGFT_SKOS/2/lcgft_skos.skos", "submission_id": 2, "domain": null, "description": "The Library of Congress Genre/Form Terms for Library and Archival Materials (LCGFT) is a thesaurus that describes what a work is versus what it is about.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-03-20T00:00:00", "date_created": "2018-03-20T22:17:17", "home_page": null, "version": "using output of skosify", "has_ontology_language": "SKOS", "nb_classes": 4, "nb_individuals": 2222, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LC-MEDIA", "name": "Library of Congress Media Types Scheme", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3749, "download_url": "media/ontologies/LC-MEDIA/17/lc-media.skos", "submission_id": 17, "domain": null, "description": "Media Types Scheme is derived from a controlled list of values reflecting the general type of intermediation device required to view, play, run, etc., the content of a resource, which is principally used in RDA cataloging.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-07-03T01:05:12", "date_created": "2020-07-03T01:05:13", "home_page": "http://id.loc.gov/vocabulary/mediaTypes.html", "version": null, "has_ontology_language": "SKOS", "nb_classes": 6, "nb_individuals": 11, "nb_properties": 0, "max_depth": 1, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LCMPT", "name": "Library of Congress Medium of Performance Thesaurus for Music", "status": "Classified", "topics": null, "species": null, "submission": { "id": 747, "download_url": "media/ontologies/LCMPT/3/lcmpt.skos", "submission_id": 3, "domain": null, "description": "Vocabulary that provides terminology to describe the instruments, voices, etc., used in the performance of musical works.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-08-31T00:00:00", "date_created": "2017-09-06T18:52:09", "home_page": "http://id.loc.gov/authorities/performanceMediums.html", "version": "31 Aug 2017", "has_ontology_language": "SKOS", "nb_classes": 10, "nb_individuals": 849, "nb_properties": 0, "max_depth": 0, "max_children": 10, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LC-SUBJSCHEMES", "name": "Library of Congress Subject Schemes", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3884, "download_url": "media/ontologies/LC-SUBJSCHEMES/13/lc-subjschemes.skos", "submission_id": 13, "domain": null, "description": "ubject Schemes contains a list of subject schemes and assigns a URI to each scheme. The purpose of these properties is to permit users to associate controlled subjects with the appropriate subject schemes. These schemes are general subject heading and thesauri, such as the Library of Congress Subject Headings, along with a number of focused subject term lists like Medical Subject Headings or Getty Thesaurus of Geographic Names.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-08-19T01:07:09", "date_created": "2020-08-19T01:07:11", "home_page": "http://id.loc.gov/vocabulary/subjectSchemes.html", "version": null, "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 351, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LDA", "name": "Ontology of Language Disorder in Autism", "status": "Classified", "topics": null, "species": null, "submission": { "id": 403, "download_url": "media/ontologies/LDA/1/lda.owl", "submission_id": 1, "domain": null, "description": "We present the short review of language terms used in the domain of autism and populate them into ontology available for consultation and sharing. The language terms were obtained via text mining and automatic retrieval of terms from the corpus of PubMed abstracts.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2008-12-15T08:00:00", "date_created": "2009-09-28T15:47:35", "home_page": null, "version": "12-15-2008", "has_ontology_language": "OWL", "nb_classes": 36, "nb_individuals": 0, "nb_properties": 1, "max_depth": 2, "max_children": 14, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LSHO", "name": "LiveStockHealthOntologyCattleUseCase ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5897, "download_url": "media/ontologies/LSHO/1/lsho.owl", "submission_id": 1, "domain": null, "description": "Ontology is the formal and explicit description of a data model within an application domain in which relationships occur between individuals, making it easy to reuse and knowledge sharing. LSHO contains the information related to the health and well-being of livestock animal species such as cattle. Furthermore, it represents the explicit structured and standardized framework for specific domain knowledge and data integration of livestock species. During the development process, knowledge can be retrieved from domain experts, and after the retrieving process, the first prototype is designed for reasoning and planning of data related to cattle. Moreover, LSHO contains information regarding farms Identifications, their samples, geolocation, breed, diagnostic tests, Pathogen identifications, and Pathogen results for specific bacteria such as Histophilus somni (HS), Mannheimia haemolytica (MH), Pasteurella multocida (PM), Bovine coronavirus (BCV) bacterial mycoplasma and aerobic culture results for the respiratory track . This information is represented in the form of concepts of classes, subclasses, and their relationship in the form of object and data properties.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-06-25T00:00:00", "date_created": "2023-06-25T21:42:39", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 18, "nb_individuals": 0, "nb_properties": 13, "max_depth": 1, "max_children": 18, "avg_children": 18, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LUNGMAP_H_CELL", "name": "Cell Ontology for Human Lung Maturation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2789, "download_url": "media/ontologies/LUNGMAP_H_CELL/6/lungmap_h_cell.owl", "submission_id": 6, "domain": null, "description": "Cell Ontology for Human Lung Maturation (LungMAP Human Anatomy (LMHA))\r\n\r\nDeveloped by Susan E Wert, Gail H. Deutsch, Helen Pan, and the NHLBI Molecular Atlas of Lung Development Program Consortium Ontology Subcommittee", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-07-28T00:00:00", "date_created": "2019-07-28T22:06:22", "home_page": "https://www.lungmap.net/breath-ontology-browser/", "version": "3.2", "has_ontology_language": "OWL", "nb_classes": 80, "nb_individuals": 1, "nb_properties": 0, "max_depth": 7, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LUNGMAP-HUMAN", "name": "Anatomic Ontology for Human Lung Maturation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2815, "download_url": "media/ontologies/LUNGMAP-HUMAN/6/lungmap-human.owl", "submission_id": 6, "domain": null, "description": "Anatomic Ontology for Human Lung Maturation (LungMAP Human Anatomy (LMHA)\r\n\r\nDeveloped by Susan E Wert, Gail H. Deutsch, Helen Pan, and the NHLBI Molecular Atlas of Lung Development Program Consortium Ontology Subcommittee", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-07-30T00:00:00", "date_created": "2019-07-31T01:20:45", "home_page": "https://www.lungmap.net/breath-ontology-browser/", "version": "1.4", "has_ontology_language": "OWL", "nb_classes": 304, "nb_individuals": 0, "nb_properties": 8, "max_depth": 5, "max_children": 237, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LUNGMAP-HUMAN1", "name": "human lung development ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1354, "download_url": "media/ontologies/LUNGMAP-HUMAN1/1/lungmap-human1.owl", "submission_id": 1, "domain": null, "description": "Submission of LUNGMAP-HUMAN ontology by JBG", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-03-24T00:00:00", "date_created": "2018-03-24T21:46:01", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 295, "nb_individuals": 0, "nb_properties": 0, "max_depth": 16, "max_children": 10, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LUNGMAP_M_CELL", "name": "Cell Ontology for Mouse Lung Maturation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2793, "download_url": "media/ontologies/LUNGMAP_M_CELL/5/lungmap_m_cell.owl", "submission_id": 5, "domain": null, "description": "Cell Ontology for Mouse Lung Maturation (LungMAP Mouse Anatomy (LMMA))\r\n\r\nDeveloped by Susan E Wert, Gail H. Deutsch, Helen Pan, and the NHLBI Molecular Atlas of Lung Development Program Consortium Ontology Subcommittee", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-07-28T00:00:00", "date_created": "2019-07-28T22:12:46", "home_page": "https://www.lungmap.net/breath-ontology-browser/", "version": "3.2", "has_ontology_language": "OWL", "nb_classes": 92, "nb_individuals": 0, "nb_properties": 2, "max_depth": 7, "max_children": 12, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LUNGMAP-MOUSE", "name": "Anatomic Ontology for Mouse Lung Maturation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2816, "download_url": "media/ontologies/LUNGMAP-MOUSE/4/lungmap-mouse.owl", "submission_id": 4, "domain": null, "description": "Anatomic ontology for Mouse Lung Maturation (LungMAP Mouse Anatomy (LMMA)\r\n\r\nDeveloped by Susan E Wert, Gail H. Deutsch, Helen Pan, and the NHLBI Molecular Atlas of Lung Development Program Consortium Ontology Subcommittee", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-07-28T00:00:00", "date_created": "2019-07-28T22:08:56", "home_page": "https://lungmap.net/breath-ontology-browser/", "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 308, "nb_individuals": 0, "nb_properties": 6, "max_depth": 4, "max_children": 215, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGEO", "name": "Original Environment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7293, "download_url": "media/ontologies/OGEO/1/ogeo.owl", "submission_id": 1, "domain": null, "description": "Early version of the Environment Ontology (EnvO) from 2008. Intended for automatic alignment, comparison, and diffing purposes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-04-11T00:00:00", "date_created": "2025-04-12T04:45:50", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 1214, "nb_individuals": 0, "nb_properties": 4, "max_depth": 10, "max_children": 93, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ODFA", "name": "Ontology of Dental Care-Related Fear and Anxiety", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8114, "download_url": "media/ontologies/ODFA/6/odfa.owl", "submission_id": 6, "domain": null, "description": "The Ontology of Dental care-related Fear, Anxiety, and/or Phobia (ODFA) contains terms for defining and classifying dental-care related fear, anxiety, and/or phobia (DFA). The ODFA’s concepts and relations facilitate the development of tools and resources capable of enhancing our understanding of the impacts of DFA, and when applied to study data, the ODFA enables the integration and interoperability of data from multiple studies.\r\n\r\nThe ODFA is developed as a subset of the Oral Health and Disease Ontology (http://purl.obolibrary.org/obo/ohd.owl). Issues and new term requests can be submitted at https://github.com/oral-health-and-disease-ontologies/ohd-ontology/issues., the ODFA enables the integration and interoperability of data from multiple studies.\n\nThe ODFA is developed as a subset of the Oral Health and Disease Ontology (http://purl.obolibrary.org/obo/ohd.owl). Issues and new term requests can be submitted at https://github.com/oral-health-and-disease-ontologies/ohd-ontology/issues.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-04-10T01:16:30", "date_created": "2026-04-09T00:00:00", "home_page": null, "version": "2026-04-03", "has_ontology_language": "OWL", "nb_classes": 237, "nb_individuals": 10, "nb_properties": 15, "max_depth": 12, "max_children": 10, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICPC", "name": "International Classification of Primary Care", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 737, "download_url": "media/ontologies/ICPC/9/icpc.umls", "submission_id": 9, "domain": null, "description": "The International Classification of Primary Care (ICPC). Denmark: World Organisation of Family Doctors, 1993.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:45", "date_created": "2017-02-06T21:26:45", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 874, "nb_individuals": 0, "nb_properties": 2, "max_depth": 1, "max_children": 333, "avg_children": 20, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICPCFRE", "name": "ICPC, French Translation", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 255, "download_url": "media/ontologies/ICPCFRE/9/icpcfre.umls", "submission_id": 9, "domain": null, "description": "ICPC, French Translation", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:50", "date_created": "2017-02-06T21:26:50", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 850, "nb_individuals": 0, "nb_properties": 1, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "M4M19-VARS", "name": "M4M19 Variables", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4763, "download_url": "media/ontologies/M4M19-VARS/4/m4m19-vars.skos", "submission_id": 4, "domain": null, "description": "Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is NICEST-2 Variables. This controlled vocabulary is a result of Metadata 4 Machine (M4M) Workshop 19 (M4M.19 funded by EOSC-Nordic ) provided to the NICEST-2 project.\r\n\r\nsheet2rdf and OntoStack, developed by FAIR Data Collective, are used to build and serve NICEST-2 Subjects, while PURL will be used to persist identifiers for the vocabulary terms and properties:\r\n\r\nhttp://purl.org/m4m19/variables/", "documentation": "https://github.com/fair-data-collective/M4M19-variables-vocabulary", "publication": "https://github.com/fair-data-collective/M4M19-variables-vocabulary", "publications": null, "products": null, "taxon": null, "date_released": "2021-12-07T00:00:00", "date_created": "2021-12-08T03:22:14", "home_page": "https://github.com/fair-data-collective/M4M19-variables-vocabulary", "version": "0.2.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 22, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "M4M-20-SUBJECTS", "name": "M4M.20 FAIRWare Subjects", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5190, "download_url": "media/ontologies/M4M-20-SUBJECTS/6/m4m-20-subjects.skos", "submission_id": 6, "domain": null, "description": "Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is Psychology Subjects. This controlled vocabulary is produced in Metadata 4 Machine (M4M) Workshop 20 (M4M.20 FAIRware Psychology), which one of deliverables of FAIRware project which if funded by RoRi.\r\n\r\nsheet2rdf is used to build and serve Psychology Subjects, while PURL is used to persist identifiers for the vocabulary, which resolve on BioPortal (Stanford's ontology service):\r\n\r\nhttp://purl.org/m4m20/subjects/", "documentation": "https://github.com/fair-data-collective/M4M-20-FAIRware-Psychology-Subjects", "publication": "https://github.com/fair-data-collective/M4M-20-FAIRware-Psychology-Subjects", "publications": null, "products": null, "taxon": null, "date_released": "2022-06-23T00:00:00", "date_created": "2022-06-23T11:34:30", "home_page": "https://github.com/fair-data-collective/M4M-20-FAIRware-Psychology-Subjects", "version": "0.1.3", "has_ontology_language": "SKOS", "nb_classes": 10, "nb_individuals": 16, "nb_properties": 11, "max_depth": 1, "max_children": 5, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "M4M-20-VARIABLES", "name": "M4M.20 FAIRWare Variables", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6361, "download_url": "media/ontologies/M4M-20-VARIABLES/7/m4m-20-variables.skos", "submission_id": 7, "domain": null, "description": "DEMO vocabulary only! Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is Psychology Variables. This controlled vocabulary is produced in Metadata 4 Machine (M4M) Workshop 20 (M4M.20 FAIRware Psychology), which is one of deliverables of FAIRware project funded by RoRi.\r\n\r\nsheet2rdf is used to build and serve Psychology Variables, while PURL is used to persist identifiers for the vocabulary, which resolve on BioPortal (Stanford's ontology service):\r\n", "documentation": "https://www.gofairfoundation.org/m4m/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-06-23T00:00:00", "date_created": "2024-01-28T12:12:04", "home_page": "https://raw.githubusercontent.com/gofair-foundation/vocabs_archive/main/M4M20_variables.ttl", "version": "0.1.3", "has_ontology_language": "SKOS", "nb_classes": 10, "nb_individuals": 9, "nb_properties": 11, "max_depth": 1, "max_children": 5, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "M4M-21-SUBJECTS", "name": "M4M.21 FAIRWare Subjects", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5195, "download_url": "media/ontologies/M4M-21-SUBJECTS/4/m4m-21-subjects.skos", "submission_id": 4, "domain": null, "description": "Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is Neuroscience Subjects. This controlled vocabulary is produced in Metadata 4 Machine (M4M) Workshop 21 (M4M.21 FAIRware Neuroscience), which is one of deliverables of FAIRware project funded by RoRi.\r\n\r\nsheet2rdf is used to build and serve Neuroscience Subjects, while PURL is used to persist identifiers for the vocabulary, which resolve on BioPortal (Stanford's ontology service):\r\n\r\nhttp://purl.org/m4m21/subjects/", "documentation": "https://github.com/fair-data-collective/M4M-21-FAIRware-Neuroscience-Subjects", "publication": "https://github.com/fair-data-collective/M4M-21-FAIRware-Neuroscience-Subjects", "publications": null, "products": null, "taxon": null, "date_released": "2022-06-23T00:00:00", "date_created": "2022-06-23T14:58:04", "home_page": "https://github.com/fair-data-collective/M4M-21-FAIRware-Neuroscience-Subjects", "version": "0.1.2", "has_ontology_language": "SKOS", "nb_classes": 10, "nb_individuals": 9, "nb_properties": 11, "max_depth": 1, "max_children": 5, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "M4M-21-VARIABLES", "name": "M4M.21 FAIRWare Variables", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5672, "download_url": "media/ontologies/M4M-21-VARIABLES/5/m4m-21-variables.skos", "submission_id": 5, "domain": null, "description": "Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is Neuroscience Variables. This controlled vocabulary is produced in Metadata 4 Machine (M4M) Workshop 21 (M4M.21 FAIRware Neuroscience), which is one of deliverables of FAIRware project funded by RoRi.\r\n\r\nsheet2rdf is used to build and serve Neuroscience Variables, while PURL is used to persist identifiers for the vocabulary, which resolve on BioPortal (Stanford's ontology service):\r\n\r\nhttp://purl.org/m4m21/variables/", "documentation": "https://github.com/fair-data-collective/M4M-21-FAIRware-Neuroscience-Variables", "publication": "https://github.com/fair-data-collective/M4M-21-FAIRware-Neuroscience-Variables", "publications": null, "products": null, "taxon": null, "date_released": "2023-02-15T02:13:02", "date_created": "2023-02-15T02:13:04", "home_page": "https://github.com/fair-data-collective/M4M-21-FAIRware-Neuroscience-Variables", "version": "0.1.2", "has_ontology_language": "SKOS", "nb_classes": 10, "nb_individuals": 10, "nb_properties": 11, "max_depth": 1, "max_children": 5, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "M4M-CHAR", "name": "M4M-CHAR", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6211, "download_url": "media/ontologies/M4M-CHAR/1/m4m-char.skos", "submission_id": 1, "domain": null, "description": "M4M Charlotseville Vocabulary", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-15T00:00:00", "date_created": "2023-11-15T13:05:55", "home_page": null, "version": "0.0.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 523, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MA", "name": "Mouse adult gross anatomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7995, "download_url": "media/ontologies/MA/131/ma.owl", "submission_id": 131, "domain": "anatomy and development", "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ma.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ma.owl" }, { "id": "ma.obo", "ontology_purl": "http://purl.obolibrary.org/obo/ma.obo" } ], "taxon": { "id": "NCBITaxon:10088", "label": "Mus" }, "date_released": "2026-03-02T12:20:01.675643", "date_created": "2026-03-02T12:20:01.675646", "home_page": "https://github.com/obophenotype/adult-mouse-anatomy-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 3390, "nb_individuals": 0, "nb_properties": 1, "max_depth": 8, "max_children": 1347, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "05c692bc4efbe8d9edb0459109c66fb6" } }, { "acronym": "MACROALGAETRAITS", "name": "Macroalgae Traits Thesaurus", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5763, "download_url": "media/ontologies/MACROALGAETRAITS/1/macroalgaetraits.skos", "submission_id": 1, "domain": null, "description": "The Macroalgae Traits Thesaurus contains several concepts on demographic and functional traits. It has been developed and published by LifeWatch Italy, the Italian node of the e-science European infrastructure for biodiversity and ecosystem research (LifeWatch ERIC). It reflects the agreement of a scientific expert community to fix semantic properties (e.g. label, definition) of approximately 100 traits.", "documentation": "http://www.lifewatchitaly.eu/web/lifewatch-italia/reports", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-04-10T00:00:00", "date_created": "2023-04-10T19:33:48", "home_page": "http://thesauri.lifewatchitaly.eu/Macroalgae/index.php", "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 127, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MAMO", "name": "Mathematical modeling ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5658, "download_url": "media/ontologies/MAMO/17/mamo.owl", "submission_id": 17, "domain": "simulation", "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mamo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mamo.owl" } ], "taxon": null, "date_released": "2023-02-13T14:27:29.118882", "date_created": "2023-02-13T14:27:29.118903", "home_page": "http://sourceforge.net/p/mamo-ontology/wiki/Home/", "version": null, "has_ontology_language": "OWL", "nb_classes": 106, "nb_individuals": 0, "nb_properties": 3, "max_depth": 8, "max_children": 12, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "3697ab49396a34769be0883f17c50a99" } }, { "acronym": "MCO", "name": "Microbial Conditions Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2559, "download_url": "media/ontologies/MCO/2/mco.owl", "submission_id": 2, "domain": "experimental conditions", "description": "Microbial Conditions Ontology is an ontology...", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mco.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mco.owl" }, { "id": "mco.obo", "ontology_purl": "http://purl.obolibrary.org/obo/mco.obo" } ], "taxon": null, "date_released": "2019-05-20T13:24:27.583288", "date_created": "2019-05-20T13:24:27.583312", "home_page": "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 3384, "nb_individuals": 0, "nb_properties": 16, "max_depth": 21, "max_children": 179, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "489fbeba542c9f4b2717f5a8a08893d4" } }, { "acronym": "OFDSIPT", "name": "Ontology for Data Science in Practice (trial)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7776, "download_url": "media/ontologies/OFDSIPT/1/ofdsipt.owl", "submission_id": 1, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-20T00:00:00", "date_created": "2025-11-20T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 24, "nb_individuals": 23, "nb_properties": 9, "max_depth": 2, "max_children": 19, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGCO", "name": "OriGinal Chemical Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7111, "download_url": "media/ontologies/OGCO/1/ogco.owl", "submission_id": 1, "domain": null, "description": "The Original Chemical Ontology was developed by Michael Ashburner & Pankaj Jaiswal in 2002, before development shifted to CHEBI. It was revived by Chris Mungall for purposes of comparison with the current CHEBI and CHEMESSENCE", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-01-09T00:00:00", "date_created": "2025-01-09T21:00:01", "home_page": "https://github.com/cmungall/chemessence/tree/main/src/ontology/components", "version": null, "has_ontology_language": "OWL", "nb_classes": 8776, "nb_individuals": 0, "nb_properties": 0, "max_depth": 17, "max_children": 144, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CIDOC-CRM", "name": "CIDOC Conceptual Reference Model", "status": "Classified", "topics": null, "species": null, "submission": { "id": 853, "download_url": "media/ontologies/CIDOC-CRM/2/cidoc-crm.owl", "submission_id": 2, "domain": null, "description": "The CIDOC Conceptual Reference Model (CRM) provides definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation.\r\n\r\nThe CIDOC CRM is intended to promote a shared understanding of cultural heritage information by providing a common and extensible semantic framework that any cultural heritage information can be mapped to. It is intended to be a common language for domain experts and implementers to formulate requirements for information systems and to serve as a guide for good practice of conceptual modelling. In this way, it can provide the \"semantic glue\" needed to mediate between different sources of cultural heritage information, such as that published by museums, libraries and archives.", "documentation": "http://www.cidoc-crm.org/Version/version-6.2", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-19T00:00:00", "date_created": "2017-11-22T19:02:04", "home_page": "http://www.cidoc-crm.org/", "version": "v6.2", "has_ontology_language": "OWL", "nb_classes": 85, "nb_individuals": 0, "nb_properties": 275, "max_depth": 8, "max_children": 10, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CIINTEADO", "name": "Ciona intestinalis Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 359, "download_url": "media/ontologies/CIINTEADO/2/ciinteado.obo", "submission_id": 2, "domain": null, "description": " The first ontology describing the anatomy and the development of Ciona intestinalis, based on the Hotta developmental table. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-07T00:00:00", "date_created": "2016-07-29T01:34:35", "home_page": "http://www.aniseed.cnrs.fr/", "version": "Version 1", "has_ontology_language": "OBO", "nb_classes": 880, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 371, "avg_children": 88, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CIO", "name": "Confidence Information Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 976, "download_url": "media/ontologies/CIO/2/cio.owl", "submission_id": 2, "domain": null, "description": "An ontology to capture confidence information about annotations.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "cio.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cio.owl" }, { "id": "cio.obo", "ontology_purl": "http://purl.obolibrary.org/obo/cio.obo" } ], "taxon": null, "date_released": "2017-12-12T21:21:15.446064", "date_created": "2017-12-12T21:21:15.446087", "home_page": "https://github.com/BgeeDB/confidence-information-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 44, "nb_individuals": 0, "nb_properties": 5, "max_depth": 6, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "a3b4298bc3444e8770ae3ad2703c9a7d" } }, { "acronym": "CIRCUITH", "name": "NeuroMorpho.Org Cell type Circuitry", "status": "Classified", "topics": null, "species": null, "submission": { "id": 735, "download_url": "media/ontologies/CIRCUITH/3/circuith.owl", "submission_id": 3, "domain": null, "description": "A hierarchy of neuron types classified according to their circuit role.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-03-31T01:00:42", "date_created": "2017-03-31T01:00:42", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 6, "nb_properties": 0, "max_depth": 2, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CISAVIADO", "name": "Ciona savignyi Anatomy and Development Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 179, "download_url": "media/ontologies/CISAVIADO/2/cisaviado.obo", "submission_id": 2, "domain": null, "description": "The first ontology describing the anatomy and the development of Ciona savignyi, based on the Hotta developmental table. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-07T00:00:00", "date_created": "2016-07-29T22:50:22", "home_page": "http://www.aniseed.cnrs.fr/", "version": null, "has_ontology_language": "OBO", "nb_classes": 880, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 371, "avg_children": 88, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "citation", "name": "Citation Counting", "status": "Classified", "topics": null, "species": null, "submission": { "id": 327, "download_url": "media/ontologies/citation/1/citation.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl\r\n\r\nThis file contains terms that relate to citation counts from the Citation Counting and Context Characterization ontology of the Semantic Publishing and Referencing ontology suite (http://sempublishing.svn.sourceforge.net/viewvc/sempublishing/SPAR/index.html)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T01:34:48", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 0, "nb_properties": 4, "max_depth": 0, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MDRFRE", "name": "MedDRA French", "status": "Classified", "topics": null, "species": null, "submission": { "id": 753, "download_url": "media/ontologies/MDRFRE/9/mdrfre.umls", "submission_id": 9, "domain": null, "description": "Medical Dictionary for Regulatory Activities Terminology (MedDRA), French Edition", "documentation": "http://www.meddramsso.com", "publication": "http://www.meddramsso.com", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:50", "date_created": "2017-02-06T21:26:50", "home_page": "http://www.meddramsso.com", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 69107, "nb_individuals": 0, "nb_properties": 14, "max_depth": 3, "max_children": 250, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MDRGER", "name": "MedDRA German", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8062, "download_url": "media/ontologies/MDRGER/11/mdrger.umls", "submission_id": 11, "domain": null, "description": "This is the German translation of the Medical Dictionary for Regulatory Activities (MedDRA). ", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-03T00:00:00", "date_created": "2026-03-22T00:00:00", "home_page": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/MDR/index.html", "version": "28.0", "has_ontology_language": "UMLS", "nb_classes": 82914, "nb_individuals": 82908, "nb_properties": 22, "max_depth": 8, "max_children": 53790, "avg_children": 44, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MECHANOH", "name": "NeuroMorpho.Org mechanoreception system", "status": "Classified", "topics": null, "species": null, "submission": { "id": 391, "download_url": "media/ontologies/MECHANOH/2/mechanoh.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of regions involved in mechanoreception system.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-09-17T01:05:53", "date_created": "2016-09-17T01:05:53", "home_page": null, "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MEDEON", "name": "Medical Error Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 360, "download_url": "media/ontologies/MEDEON/1/medeon.owl", "submission_id": 1, "domain": null, "description": "This is a demo version of the patient safety ontology. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-15T00:00:00", "date_created": "2016-01-15T17:37:12", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 71, "nb_individuals": 5, "nb_properties": 5, "max_depth": 2, "max_children": 17, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MEDLINEPLUS", "name": "MedlinePlus Health Topics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 694, "download_url": "media/ontologies/MEDLINEPLUS/8/medlineplus.umls", "submission_id": 8, "domain": null, "description": "MedlinePlus Health Topics;National Library of Medicine;June 14, 2008;Bethesda, MD", "documentation": "http://www.nlm.nih.gov/medlineplus/xmldescription.html", "publication": "http://www.nlm.nih.gov/medlineplus/xmldescription.html", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:11", "date_created": "2017-02-06T21:26:12", "home_page": "http://www.nlm.nih.gov/medlineplus/xmldescription.html", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 2146, "nb_individuals": 0, "nb_properties": 13, "max_depth": 2, "max_children": 117, "avg_children": 21, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONLIRA", "name": "Ontology of Liver for Radiology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 431, "download_url": "media/ontologies/ONLIRA/4/onlira.owl", "submission_id": 4, "domain": null, "description": "ONLIRA (Ontology of the Liver for Radiology) focuses on a semantic specification of imaging observations of CT scans for the liver. ONLIRA extends RadLex with semantic relationships that describe and relate the concepts. Thus, automated processing tasks, such as identifying similar patients, are supported.", "documentation": "http://vavlab.ee.boun.edu.tr/pages.php?p=research/CARERA/carera.html", "publication": "http://vavlab.ee.boun.edu.tr/pages.php?p=research/CARERA/carera.html", "publications": null, "products": null, "taxon": null, "date_released": "2015-01-26T18:18:13", "date_created": "2016-02-02T00:39:20", "home_page": "http://vavlab.ee.boun.edu.tr/pages.php?p=research/CARERA/carera.html", "version": "changes\n* Segments and Regions are modelling as Classes in order to identify which patient (liver) they belong to.\n* Redundant restrictions are removed\n", "has_ontology_language": "OWL", "nb_classes": 56, "nb_individuals": 0, "nb_properties": 49, "max_depth": 3, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_DE", "name": "ORDO GERMAN", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7825, "download_url": "media/ontologies/ORDO_DE/19/ordo_de.owl", "submission_id": 19, "domain": null, "description": "This ontology is the german version of ORDO with definition, labels and synonyms in german.", "documentation": "https://www.orphadata.com/ordo/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-20T12:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "4.8", "has_ontology_language": "OWL", "nb_classes": 16036, "nb_individuals": 0, "nb_properties": 13, "max_depth": 11, "max_children": 4477, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MEDO", "name": "Mouse Experimental Design Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 75, "download_url": "media/ontologies/MEDO/1/medo.owl", "submission_id": 1, "domain": null, "description": "A representation of experimental design for high-throughput mouse analysis pipelines.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-11-22T08:00:00", "date_created": "2012-11-22T16:46:26", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 83, "nb_individuals": 0, "nb_properties": 5, "max_depth": 5, "max_children": 8, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OLAS", "name": "Ontology of Laboratory Animal Science", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7846, "download_url": "media/ontologies/OLAS/3/olas.owl", "submission_id": 3, "domain": null, "description": "The Ontology of Laboratory Animal Science (OLAS) is established as a community-based biomedical ontology in the field of laboratory animal science, with the aim to ontologically represent entities and the relations among the entities related to laboratory animal science., OLAS is a biomedical ontology in the area of laboratory animal science.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-22T00:00:00", "date_created": "2025-12-22T00:00:00", "home_page": null, "version": "2025-12-22", "has_ontology_language": "OWL", "nb_classes": 96226, "nb_individuals": 28, "nb_properties": 52, "max_depth": 19, "max_children": 63970, "avg_children": 280, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CKDO", "name": "Chronic Kidney Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 219, "download_url": "media/ontologies/CKDO/1/ckdo.owl", "submission_id": 1, "domain": null, "description": "The Chronic Kidney Disease Ontology was developed to assist routine data studies and case identification of CKD in primary care.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-04T00:00:00", "date_created": "2017-07-04T09:28:37", "home_page": "clininf.eu", "version": "v0.1", "has_ontology_language": "OWL", "nb_classes": 280, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 15, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MCCV", "name": "Microbial Culture Collection Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 275, "download_url": "media/ontologies/MCCV/10/mccv.owl", "submission_id": 10, "domain": null, "description": "Structured controlled vocabulary for describing meta information of microbial calture collection maintained in biological research centers", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-08T00:00:00", "date_created": "2016-03-14T09:09:37", "home_page": null, "version": "Version 0.96 beta", "has_ontology_language": "OWL", "nb_classes": 20, "nb_individuals": 0, "nb_properties": 59, "max_depth": 1, "max_children": 12, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MCHVODANATERMS", "name": "MCHVODANATERMS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4904, "download_url": "media/ontologies/MCHVODANATERMS/5/mchvodanaterms.skos", "submission_id": 5, "domain": null, "description": "Ontology containing the controlled terms and semantic properties used in the Maternal Child Health Care generic template used within different facilities in VODANA ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-02-10T00:00:00", "date_created": "2022-02-10T18:12:22", "home_page": null, "version": "3.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 27, "nb_properties": 9, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MCRO", "name": "Model Card Report Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7787, "download_url": "media/ontologies/MCRO/3/mcro.owl", "submission_id": 3, "domain": "information technology", "description": "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1186/s12859-022-04797-6", "title": "Toward a standard formal semantic representation of the model card report" } ], "products": [ { "id": "mcro.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mcro.owl" } ], "taxon": null, "date_released": "2025-12-08T12:49:49.263840", "date_created": "2025-12-08T12:49:49.263843", "home_page": "https://github.com/UTHealth-Ontology/MCRO", "version": null, "has_ontology_language": "OWL", "nb_classes": 938, "nb_individuals": 24, "nb_properties": 145, "max_depth": 11, "max_children": 155, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "f0e11461d551d55a2bf01c9f5b0b2212" } }, { "acronym": "CPRO", "name": "Computer-Based Patient Record Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 776, "download_url": "media/ontologies/CPRO/3/cpro.owl", "submission_id": 3, "domain": null, "description": "A uniform core set of data elements (whose formal semantics are captured in OWL) for use in a Computer-Based Patient Record (CPR)", "documentation": "https://www.researchgate.net/publication/235463154_A_Framework_Ontology_for_Computer-Based_Patient_Record_Systems?ev=prf_pub", "publication": "https://www.researchgate.net/publication/235463154_A_Framework_Ontology_for_Computer-Based_Patient_Record_Systems?ev=prf_pub", "publications": null, "products": null, "taxon": null, "date_released": "2013-04-24T07:00:00", "date_created": "2013-04-25T00:36:12", "home_page": "https://code.google.com/p/cpr-ontology/", "version": "Last modification: July 31th, 2011 Chimezie Ogbuji", "has_ontology_language": "OWL", "nb_classes": 134, "nb_individuals": 32, "nb_properties": 49, "max_depth": 8, "max_children": 9, "avg_children": 2, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "OMCO", "name": "OligoMetastatic Cancer Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7215, "download_url": "media/ontologies/OMCO/1/omco.owl", "submission_id": 1, "domain": null, "description": "The OligoMetastatic Cancer Ontology(OMCO) is a disease-specific ontology that characterizes the knowledge field of oligometastatic cancer.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-03-03T00:00:00", "date_created": "2025-03-04T02:48:43", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 15314, "nb_individuals": 2, "nb_properties": 30, "max_depth": 14, "max_children": 123, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VIVO", "name": "VIVO Ontology for Researcher Discovery", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 423, "download_url": "media/ontologies/VIVO/2/vivo.owl", "submission_id": 2, "domain": null, "description": "The VIVO ontology represents researchers in the context of their experience, outputs, interests, accomplishments, and associated institutions.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-07-16T15:51:31", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "version 1.1", "has_ontology_language": "OWL", "nb_classes": 225, "nb_individuals": 13, "nb_properties": 406, "max_depth": 5, "max_children": 32, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PBPKO", "name": "Physiologically-Based Pharmacokinetic Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7977, "download_url": "media/ontologies/PBPKO/1/pbpko.owl", "submission_id": 1, "domain": "chemistry and biochemistry", "description": "An ontology for modeling and understanding of pharmacokinetics in biological systems.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "pbpko.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pbpko.owl" }, { "id": "pbpko.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pbpko.obo" }, { "id": "pbpko.json", "ontology_purl": "http://purl.obolibrary.org/obo/pbpko.json" } ], "taxon": null, "date_released": "2026-02-23T13:27:12.412290", "date_created": "2026-02-23T13:27:12.412293", "home_page": "https://github.com/InSilicoVida-Research-Lab/pbpko", "version": null, "has_ontology_language": "OWL", "nb_classes": 5615, "nb_individuals": 391, "nb_properties": 750, "max_depth": 18, "max_children": 327, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "18922269dfe0c1bf765dd48099ad9266" } }, { "acronym": "COKPME", "name": "COKPME - COVID19 Ontology for analyzing the Karnataka Private Medical Establishments Data ", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 4644, "download_url": "media/ontologies/COKPME/1/cokpme.owl", "submission_id": 1, "domain": null, "description": "The ontology will be used by analysts for finding the relative and precautionary measures that can be put in action for controlling the spread. Also, it should be able to handle the competence question like:\r\n Which properties of the patient should be considered for modeling\r\n Which properties of patient changes\r\n Which properties of patient confirm COVID positive\r\n Do the symptom of the patient change over time ***\r\n Do the treatment provided depends on the category of patient\r\n Do other comorbid conditions derive any interestingness ****\r\n Which symptom is high in a particular district? (Or) Does the geographical location influence the patient category\r\nThese keep change over an iterative process of ontology development", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-07-09T00:00:00", "date_created": "2021-07-09T17:35:14", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 25, "nb_individuals": 41, "nb_properties": 19, "max_depth": 3, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CNO_ACRONYM", "name": "CNO_NAME", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 593, "download_url": "media/ontologies/CNO_ACRONYM/1/cno_acronym.owl", "submission_id": 1, "domain": null, "description": "test", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-15T00:00:00", "date_created": "2016-06-15T06:49:29", "home_page": null, "version": "version 0.5", "has_ontology_language": "OWL", "nb_classes": 240, "nb_individuals": 0, "nb_properties": 22, "max_depth": 7, "max_children": 27, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PECO", "name": "Plant Experimental Conditions Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7807, "download_url": "media/ontologies/PECO/32/peco.owl", "submission_id": 32, "domain": "investigations", "description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578", "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." } ], "products": [ { "id": "peco.owl", "ontology_purl": "http://purl.obolibrary.org/obo/peco.owl" }, { "id": "peco.obo", "ontology_purl": "http://purl.obolibrary.org/obo/peco.obo" } ], "taxon": null, "date_released": "2025-12-15T15:01:33.179631", "date_created": "2025-12-15T15:01:33.179633", "home_page": "http://planteome.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 3171, "nb_individuals": 0, "nb_properties": 71, "max_depth": 35, "max_children": 643, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "5f35afad084a8817f0219d88d7db13e7" } }, { "acronym": "PEO_ONTOLOGY", "name": "Prompt Engineering Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7243, "download_url": "media/ontologies/PEO_ONTOLOGY/3/peo_ontology.owl", "submission_id": 3, "domain": null, "description": "The PEO ontology is a modern ontology that covers state-of-art prompt engineering techniques and large language models. The ontology is designed to support students, researchers and developers who want to know more about prompt engineering, applying prompting techniques in solving tasks.", "documentation": "https://peoontology.vercel.app/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-03-12T00:00:00", "date_created": "2025-03-13T09:26:00", "home_page": "https://github.com/simonegramegna/peo", "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 124, "nb_individuals": 352, "nb_properties": 34, "max_depth": 4, "max_children": 33, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "provenance", "name": "Provenance", "status": "Classified", "topics": null, "species": null, "submission": { "id": 67, "download_url": "media/ontologies/provenance/1/provenance.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl. It contains terms related to people for the purpose of accumulating information about persons who are not fully identified.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T10:26:20", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 3, "nb_individuals": 0, "nb_properties": 2, "max_depth": 1, "max_children": 2, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "pseudo", "name": "Pseudogene", "status": "Classified", "topics": null, "species": null, "submission": { "id": 304, "download_url": "media/ontologies/pseudo/1/pseudo.obo", "submission_id": 1, "domain": null, "description": null, "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2008-10-28T07:00:00", "date_created": "2008-11-18T22:43:00", "home_page": null, "version": "0.1", "has_ontology_language": "OBO", "nb_classes": 23, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PTRO", "name": "Preclinical Trials in Radiation Oncology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8073, "download_url": "media/ontologies/PTRO/1/ptro.owl", "submission_id": 1, "domain": null, "description": "PTRO focuses on preclinical data standardized according to SEND, with emphasis on radiation oncology studies. It is not intended to replace clinical trial ontologies or general-purpose biomedical ontologies but to complement them by addressing the specific needs of preclinical research data representation.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-29T00:00:00", "date_created": "2026-03-29T00:00:00", "home_page": null, "version": "0.1 alpha", "has_ontology_language": "OWL", "nb_classes": 43, "nb_individuals": 0, "nb_properties": 12, "max_depth": 8, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "COSTART", "name": "Coding Symbols for a Thesaurus of Adverse Reaction Terms", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 286, "download_url": "media/ontologies/COSTART/9/costart.umls", "submission_id": 9, "domain": null, "description": "Coding Symbols for Thesaurus of Adverse Reaction Terms (COSTART). 5th ed. Rockville (MD). COSTART is used for coding, filing, and retrieving post-marketing adverse drug and biologic experience reports. COSTART is organized in body system and pathophysiology hierarchies, as well as a separate fetal/neonatal category of less than 20 terms.\r\n\r\nCOSTART has been superseded by the Medical Dictionary for Regulatory Activities (MedDRA) Terminology. For more information about MedDRA in the Metathesaurus, see the MedDRA source synopsis.\r\n\r\nCOSTART was last updated in the Metathesaurus in 1999.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:58", "date_created": "2017-02-06T21:25:58", "home_page": "http://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/CST/", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 1707, "nb_individuals": 0, "nb_properties": 1, "max_depth": 5, "max_children": 96, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CPT-mod", "name": "CPT modifiers", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 693, "download_url": "media/ontologies/CPT-mod/1/cpt-mod.owl", "submission_id": 1, "domain": null, "description": "Modifiers denote that a certain procedure/service has been altered by a particular circumstance, but not changed in its definition, therefore the same code is used and a modifier is added to denote what has been altered.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-09-18T07:00:00", "date_created": "2012-09-18T19:18:58", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 5, "nb_properties": 18, "max_depth": 1, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CRISP", "name": "Computer Retrieval of Information on Scientific Projects Thesaurus", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 354, "download_url": "media/ontologies/CRISP/9/crisp.umls", "submission_id": 9, "domain": null, "description": "Computer Retrieval of Information on Scientific Projects (CRISP)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:58", "date_created": "2017-02-06T21:25:59", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 9039, "nb_individuals": 0, "nb_properties": 7, "max_depth": 11, "max_children": 65, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MEDRT", "name": "MED-RT", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 2527, "download_url": "media/ontologies/MEDRT/1/medrt.umls", "submission_id": 1, "domain": null, "description": "MED-RT is a replacement and successor to NDF-RT. Both terminologies are formal ontological representations of medication terminology, pharmacologic classifications, and asserted authoritative relationships between them.\r\n\r\nDescription\r\nMED-RT includes native pharmacologic classification concepts (e.g. mechanisms of action (MoA), physiologic effects (PE), Established Pharmacologic Class (EPC)) and all relationships asserted between concepts in any namespace.\r\n\r\nMED-RT incorporates the following terminologies:\r\n\r\nRxNorm for prescribable medications, active ingredients, and relationships between them\r\nMeSH for indexing chemical structure and therapeutics using its concept hierarchies\r\nSNOMED CT International to aid in mapping between FDA pharmacologic classes and its product and substance hierarchies\r\nMED-RT will maintain the pharmacologic classification relationships from NDF-RT.\r\n\r\nIt also maintains the National Committee on Vital and Health Statistics (NCVHS) standards for describing medication pharmacologic classification: MoA and PE hierarchy concepts. The concepts are components of the Federal Medication Terminologies (FMT) interagency collaboration.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-11-05T00:00:00", "date_created": "2019-05-01T08:30:07", "home_page": null, "version": "2018AB", "has_ontology_language": "UMLS", "nb_classes": 132, "nb_individuals": 127, "nb_properties": 18, "max_depth": 8, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONE", "name": "Ontology for Nutritional Epidemiology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 4370, "download_url": "media/ontologies/ONE/9/one.owl", "submission_id": 9, "domain": "nutritional epidemiology, observational studies, dietary surveys", "description": "An ontology to standardize research output of nutritional epidemiologic studies.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "one.owl", "ontology_purl": "http://purl.obolibrary.org/obo/one.owl" } ], "taxon": null, "date_released": "2021-03-29T12:45:05.324311", "date_created": "2021-03-29T12:45:05.324325", "home_page": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies", "version": null, "has_ontology_language": "OWL", "nb_classes": 3835, "nb_individuals": 303, "nb_properties": 102, "max_depth": 17, "max_children": 81, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "b7d85b1d9b5edc5cdfb549627e488a34" } }, { "acronym": "ONL-DP", "name": "Dataset processing", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 596, "download_url": "media/ontologies/ONL-DP/1/onl-dp.owl", "submission_id": 1, "domain": null, "description": "This ontology is a module of the OntoNeuroLOG ontology, developed in the context of the NeuroLOG project, a french project supported by ANR (ANR-06-TLOG-024 grant) aiming at integrating distributed heterogeous resources in neuroimaging.\r\nIf covers the domain of Datasets and the processing of datasets. It includes a detailed taxonomy of datasets in the area of neuroimaging (and especially MR imaging) as well as a taxonomy of medical image processing.", "documentation": "http://neurolog.unice.fr/ontoneurolog/v3.0/OntoSpec-documentation.zip", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-10T07:00:00", "date_created": "2013-07-10T05:50:13", "home_page": "http://neurolog.unice.fr/ontoneurolog/v3.0/Documentation_OntoNeuroLOGv3.pdf", "version": "V1", "has_ontology_language": "OWL", "nb_classes": 541, "nb_individuals": 0, "nb_properties": 220, "max_depth": 13, "max_children": 23, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PAIN", "name": "The Pain Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8109, "download_url": "media/ontologies/PAIN/5/pain.owl", "submission_id": 5, "domain": null, "description": "The Pain Ontology contains terms for representing pain as defined by the International Association For the Study of Pain (IASP), meaning that pain is both an unpleasant physical sensation and unpleasant emotional experience. It includes terms and axioms to represent the multidimensional aspect of pain, such as temporality (e.g, acute, chronic), qualitative (e.g., sharp, throbbing), extent (e.g., local, widespread), biological mechanism (e.g., nociceptive, neuropathic), and specific anatomical locations (e.g., back, knee).", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2022-08-23T00:00:00", "date_created": "2026-04-13T00:00:00", "home_page": null, "version": "2026-04-13", "has_ontology_language": "OWL", "nb_classes": 214, "nb_individuals": 9, "nb_properties": 34, "max_depth": 14, "max_children": 19, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PW", "name": "Pathway ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7886, "download_url": "media/ontologies/PW/99/pw.owl", "submission_id": 99, "domain": "biological systems", "description": "A controlled vocabulary for annotating gene products to pathways.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/21478484", "title": "The Rat Genome Database pathway portal." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24499703", "title": "The pathway ontology - updates and applications." } ], "products": [ { "id": "pw.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pw.owl" }, { "id": "pw.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pw.obo" } ], "taxon": null, "date_released": "2026-01-19T20:15:25.934459", "date_created": "2026-01-19T20:15:25.934463", "home_page": "http://rgd.mcw.edu/rgdweb/ontology/search.html", "version": null, "has_ontology_language": "OWL", "nb_classes": 2760, "nb_individuals": 0, "nb_properties": 2, "max_depth": 10, "max_children": 135, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "6ce5d8ca9bcfbecd80469596c5f3a1bf" } }, { "acronym": "PYRAMIDAL1H", "name": "NeuroMorpho.Org Pyramidal cell microconnectivity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 40, "download_url": "media/ontologies/PYRAMIDAL1H/2/pyramidal1h.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of Pyramidal cell microcolumnar connectivity within the cortex.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:44:17", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 3, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PYRAMIDAL3H", "name": "NeuroMorpho.Org Pyramidal cell dendritic shape ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 745, "download_url": "media/ontologies/PYRAMIDAL3H/2/pyramidal3h.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of Pyramidal cell types based on their dendritic shape.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-09-01T01:20:52", "date_created": "2016-09-01T01:20:52", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 3, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MNV", "name": "VODANA Migrants", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4603, "download_url": "media/ontologies/MNV/1/mnv.skos", "submission_id": 1, "domain": null, "description": "migrants ontologies", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-07-21T00:00:00", "date_created": "2021-07-04T18:42:51", "home_page": null, "version": "1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 232, "nb_properties": 21, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MOBLAYERH", "name": "NeuroMorpho.Org Main Olfactory Bulb layers", "status": "Classified", "topics": null, "species": null, "submission": { "id": 124, "download_url": "media/ontologies/MOBLAYERH/2/moblayerh.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of layers in the Main Olfactory Bulb of mammals.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:39:11", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 8, "nb_individuals": 11, "nb_properties": 0, "max_depth": 2, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MOD", "name": "Protein modification", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7754, "download_url": "media/ontologies/MOD/123/mod.owl", "submission_id": 123, "domain": "chemistry and biochemistry", "description": "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/18688235", "title": "The PSI-MOD community standard for representation of protein modification data" } ], "products": [ { "id": "mod.owl", "title": "PSI-MOD.owl", "description": "PSI-MOD Ontology, OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/mod.owl" }, { "id": "mod.obo", "title": "PSI-MOD.obo", "description": "PSI-MOD Ontology, OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/mod.obo" } ], "taxon": null, "date_released": "2025-11-24T14:50:28.486275", "date_created": "2025-11-24T14:50:28.486278", "home_page": "http://www.psidev.info/MOD", "version": null, "has_ontology_language": "OWL", "nb_classes": 2116, "nb_individuals": 0, "nb_properties": 4, "max_depth": 7, "max_children": 122, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "0edb6c567606879ce7cfcf97499b3e9b" } }, { "acronym": "MODSCI", "name": "Modern Science Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3006, "download_url": "media/ontologies/MODSCI/3/modsci.owl", "submission_id": 3, "domain": null, "description": "ModSci is a reference ontology for modelling different types of modern sciences and related entities, such as scientific discoveries, renowned scientists, instruments, phenomena ... etc.", "documentation": "https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-10-01T00:00:00", "date_created": "2019-10-08T21:26:09", "home_page": "https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 193, "nb_individuals": 25, "nb_properties": 16, "max_depth": 4, "max_children": 37, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MONDO", "name": "Mondo Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8104, "download_url": "media/ontologies/MONDO/112/mondo.owl", "submission_id": 112, "domain": "health", "description": "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1093/genetics/iyaf215", "title": "Mondo: Integrating Disease Terminology Across Communities" }, { "id": "https://www.medrxiv.org/content/10.1101/2022.04.13.22273750", "title": "Mondo: Unifying diseases for the world, by the world" } ], "products": [ { "id": "mondo.owl", "title": "Mondo OWL edition", "format": "owl-rdf/xml", "description": "Complete ontology with merged imports.", "is_canonical": true, "ontology_purl": "http://purl.obolibrary.org/obo/mondo.owl" }, { "id": "mondo.obo", "title": "Mondo OBO Format edition", "format": "obo", "description": "OBO serialization of mondo.owl.", "derived_from": "mondo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mondo.obo" }, { "id": "mondo.json", "title": "Mondo JSON edition", "format": "obo", "description": "Obographs serialization of mondo.owl.", "derived_from": "mondo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mondo.json" }, { "id": "mondo/mondo-base.owl", "title": "Mondo Base Release", "format": "owl", "description": "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves", "ontology_purl": "http://purl.obolibrary.org/obo/mondo/mondo-base.owl" }, { "id": "mondo/mondo-simple.owl", "title": "Mondo Simple Release", "format": "owl", "description": "The main ontology classes and their hierarchies, without references to external terms.", "ontology_purl": "http://purl.obolibrary.org/obo/mondo/mondo-simple.owl" } ], "taxon": { "id": "NCBITaxon:33208", "label": "Metazoa" }, "date_released": "2026-04-13T12:16:39.773828", "date_created": "2026-04-13T12:16:39.773832", "home_page": "https://monarch-initiative.github.io/mondo", "version": null, "has_ontology_language": "OWL", "nb_classes": 57239, "nb_individuals": 18, "nb_properties": 326, "max_depth": 37, "max_children": 5450, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "717360e165c706ac2d5eb2a21ce0e239" } }, { "acronym": "CSSO", "name": "Clinical Signs and Symptoms Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 556, "download_url": "media/ontologies/CSSO/6/csso.owl", "submission_id": 6, "domain": null, "description": "An ontology for describing clinical signs and symptoms.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-03-31T00:00:00", "date_created": "2016-03-31T09:21:30", "home_page": "http://mdb.bio.titech.ac.jp/csso", "version": "Version 0.6", "has_ontology_language": "OWL", "nb_classes": 303, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 26, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CTENO", "name": "Ctenophore Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 980, "download_url": "media/ontologies/CTENO/2/cteno.owl", "submission_id": 2, "domain": "anatomy", "description": "An anatomical and developmental ontology for ctenophores (Comb Jellies)", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "cteno.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cteno.owl" } ], "taxon": { "id": "NCBITaxon:10197", "label": "Ctenophore" }, "date_released": "2017-12-12T21:37:03.413359", "date_created": "2017-12-12T21:37:03.413382", "home_page": "https://github.com/obophenotype/ctenophore-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 648, "nb_individuals": 0, "nb_properties": 85, "max_depth": 13, "max_children": 37, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "94d13aabf97c2086624d26c5944086ff" } }, { "acronym": "CTO", "name": "CTO: Core Ontology of Clinical Trials", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4515, "download_url": "media/ontologies/CTO/5/cto.owl", "submission_id": 5, "domain": null, "description": "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "cto.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cto.owl" } ], "taxon": null, "date_released": "2021-10-25T13:31:28.118924", "date_created": "2021-10-25T13:31:28.118949", "home_page": "https://github.com/ClinicalTrialOntology/CTO/", "version": null, "has_ontology_language": "OWL", "nb_classes": 299, "nb_individuals": 5, "nb_properties": 18, "max_depth": 12, "max_children": 19, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "5dc0f3ca86ebbdba22063a4190aaa6b9" } }, { "acronym": "CTO-NDD", "name": "Clinical Trials Ontology - Neurodegenerative Diseases", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3653, "download_url": "media/ontologies/CTO-NDD/1/cto-ndd.owl", "submission_id": 1, "domain": null, "description": "The CTO-NDD stands for Clinical Trial Ontology-Neurodegenerative Diseases, which was built with the purpose of organizing the knowledge domain of clinical trials in neurodegeneration field. This resource has been created for use in the IMI-funded AETIONOMY project (www.aetionomy.org). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-05-26T00:00:00", "date_created": "2020-05-26T12:26:57", "home_page": null, "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 377, "nb_individuals": 0, "nb_properties": 0, "max_depth": 13, "max_children": 18, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CVAO", "name": "STO", "status": "Classified", "topics": null, "species": null, "submission": { "id": 874, "download_url": "media/ontologies/CVAO/2/cvao.owl", "submission_id": 2, "domain": null, "description": "Stroke ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T00:00:00", "date_created": "2017-11-28T12:33:04", "home_page": null, "version": "STO_V1.1", "has_ontology_language": "OWL", "nb_classes": 1712, "nb_individuals": 69, "nb_properties": 29, "max_depth": 5, "max_children": 1676, "avg_children": 18, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CWD", "name": "Consumer Wearable Device", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1423, "download_url": "media/ontologies/CWD/1/cwd.owl", "submission_id": 1, "domain": null, "description": "Consumer Wearable Devices (CWD) enable passive, low-burden, longitudinal collection of data relevant to health behaviors, human performance, and biometrics. Such data are increasingly used to tailor clinical and public health interventions and as outcome measures in clinical trials. The uptake of CWD in research applications warrants an examination of the data collected from these products. This ontology was developed based on a review of publicly available documentation and data sets from three CWD vendors and is open for researchers to modify + extend as new features become available. \r\n\r\n\r\n\r\n\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-04-19T00:00:00", "date_created": "2018-04-19T16:53:22", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 46, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CYTO", "name": "CYTOKINE", "status": "Classified", "topics": null, "species": null, "submission": { "id": 268, "download_url": "media/ontologies/CYTO/27/cyto.owl", "submission_id": 27, "domain": null, "description": "It is flat ontology showing cytokine synonyms. It has been produced by merging cytokine branches, using SOMA (Synonym Ontology Mapping Approach) method, of 10 Bioportal ontologies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-24T00:00:00", "date_created": "2015-06-24T19:16:39", "home_page": null, "version": "Cytokines", "has_ontology_language": "OWL", "nb_classes": 317, "nb_individuals": 1, "nb_properties": 3, "max_depth": 1, "max_children": 315, "avg_children": 158, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DATASET", "name": "dataset", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3005, "download_url": "media/ontologies/DATASET/1/dataset.owl", "submission_id": 1, "domain": null, "description": "You can choose what Dataset you want", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-10-11T00:00:00", "date_created": "2019-10-11T08:01:17", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 15, "nb_individuals": 0, "nb_properties": 2, "max_depth": 3, "max_children": 12, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DCAT", "name": "Data Catalog Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 929, "download_url": "media/ontologies/DCAT/2/dcat.owl", "submission_id": 2, "domain": null, "description": "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-01-16T00:00:00", "date_created": "2017-12-07T20:14:08", "home_page": "https://www.w3.org/TR/vocab-dcat/", "version": null, "has_ontology_language": "OWL", "nb_classes": 15, "nb_individuals": 1, "nb_properties": 15, "max_depth": 2, "max_children": 5, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DCCDFV", "name": "Dublin Core Collection Description Frequency Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1218, "download_url": "media/ontologies/DCCDFV/1/dccdfv.skos", "submission_id": 1, "domain": null, "description": "The Collection Description Accrual Policy Vocabulary provides a set of terms that can be used as values of the dcterms:accrualPolicy property in descriptions of collections.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-02-03T00:00:00", "date_created": "2018-02-03T22:52:57", "home_page": "http://dublincore.org/groups/collections/accrual-policy/", "version": null, "has_ontology_language": "SKOS", "nb_classes": 1, "nb_individuals": 17, "nb_properties": 0, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "dcelements", "name": "dcelements", "status": "Classified", "topics": null, "species": null, "submission": { "id": 204, "download_url": "media/ontologies/dcelements/1/dcelements.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl. It contains selected terms from the \thttp://purl.org/dc/elements/1.1/ namespace that are included in the vivo core ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T09:41:04", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 1, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DCMITYPE", "name": "DCMI Type Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 497, "download_url": "media/ontologies/DCMITYPE/4/dcmitype.owl", "submission_id": 4, "domain": null, "description": "The DCMI Type Vocabulary provides a general, cross-domain list of approved terms that may be used as values for the Resource Type element to identify the genre of a resource", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-12-02T00:00:00", "date_created": "2017-07-18T15:06:36", "home_page": "http://dublincore.org/documents/dcmi-type-vocabulary", "version": null, "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DCT", "name": "DC Terms", "status": "Classified", "topics": null, "species": null, "submission": { "id": 946, "download_url": "media/ontologies/DCT/1/dct.owl", "submission_id": 1, "domain": null, "description": "Specification of all metadata terms maintained by the Dublin Core Metadata Initiative. Included are the fifteen terms of the Dublin Core Metadata Element Set", "documentation": "http://dublincore.org/2012/06/14/dcterms", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-09T00:00:00", "date_created": "2017-12-09T22:26:03", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 25, "nb_individuals": 100, "nb_properties": 24, "max_depth": 3, "max_children": 16, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MIXS", "name": "Minimal Information about any Sequence Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 574, "download_url": "media/ontologies/MIXS/5/mixs.owl", "submission_id": 5, "domain": null, "description": "An RDF representation of the MIxS Family of Checklists", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-04-10T07:00:00", "date_created": "2013-04-11T01:13:55", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 7, "nb_individuals": 0, "nb_properties": 59, "max_depth": 0, "max_children": 7, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MIXSCV", "name": "Minimal Information about any Sequence (MIxS) Controlled Vocabularies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 239, "download_url": "media/ontologies/MIXSCV/2/mixscv.obo", "submission_id": 2, "domain": null, "description": "Controlled vocabularies for the MIxS family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-01-26T08:00:00", "date_created": "2012-01-31T20:17:06", "home_page": null, "version": "1", "has_ontology_language": "OBO", "nb_classes": 519, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 267, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PU", "name": "Test Dataset", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7112, "download_url": "media/ontologies/PU/1/pu.owl", "submission_id": 1, "domain": null, "description": "PUPR Dataset Catalog Test", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-12-20T00:00:00", "date_created": "2025-01-07T14:38:35", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MFOMD", "name": "Mental Disease Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 3570, "download_url": "media/ontologies/MFOMD/3/mfomd.owl", "submission_id": 3, "domain": "health", "description": "An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mfomd.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mfomd.owl" } ], "taxon": null, "date_released": "2020-04-27T18:55:44.245724", "date_created": "2020-04-27T18:55:44.245758", "home_page": "https://github.com/jannahastings/mental-functioning-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 849, "nb_individuals": 18, "nb_properties": 41, "max_depth": 13, "max_children": 88, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "4afdafcfda52dc7bf06fdcb341e8c51f" } }, { "acronym": "DCAT-FDC", "name": "Data Catalog Vocabulary (DCAT)", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 4598, "download_url": "media/ontologies/DCAT-FDC/1/dcat-fdc.owl", "submission_id": 1, "domain": null, "description": "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web. This document defines the schema and provides examples for its use.\r\n\r\nDCAT enables a publisher to describe datasets and data services in a catalog using a standard model and vocabulary that facilitates the consumption and aggregation of metadata from multiple catalogs. This can increase the discoverability of datasets and data services. It also makes it possible to have a decentralized approach to publishing data catalogs and makes federated search for datasets across catalogs in multiple sites possible using the same query mechanism and structure. Aggregated DCAT metadata can serve as a manifest file as part of the digital preservation process.\r\n\r\nThe namespace for DCAT terms is http://www.w3.org/ns/dcat#\r\n\r\nThe suggested prefix for the DCAT namespace is dcat", "documentation": "https://www.w3.org/TR/vocab-dcat-3/", "publication": "https://www.w3.org/TR/vocab-dcat-3/", "publications": null, "products": null, "taxon": null, "date_released": "2021-09-23T00:00:00", "date_created": "2021-09-23T09:13:12", "home_page": "https://www.w3.org/TR/vocab-dcat-3/", "version": "Questa è una copia aggiornata del vocabolario DCAT v2.0 disponibile in https://www.w3.org/ns/dcat.ttl", "has_ontology_language": "OWL", "nb_classes": 52, "nb_individuals": 18, "nb_properties": 88, "max_depth": 4, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NDDO", "name": "Neurodegenerative Disease Data Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 2617, "download_url": "media/ontologies/NDDO/10/nddo.owl", "submission_id": 10, "domain": null, "description": "Neurodegenerative Disease Data Ontology (NDDO) is an ontology for describing data on neurodegenerative disease patients.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-06-04T01:08:49", "date_created": "2019-06-04T01:08:58", "home_page": "http://www.ontodm.com/doku.php?id=nddo", "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 1731, "nb_individuals": 53, "nb_properties": 100, "max_depth": 13, "max_children": 143, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTODT", "name": "Ontology of Datatypes", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 944, "download_url": "media/ontologies/ONTODT/8/ontodt.owl", "submission_id": 8, "domain": null, "description": "This ontology contains entities such as: datatype, datatype generator, datatype qualiy and others giving the possibility to represent arbitrary complex datatypes. This is an important fact for a general data mining ontology that wants to represent and query over modelling algorithms for mining structured data. \r\n\r\nThe ontology was first developed under the OntoDM (Ontology of Data Mining is available at http://kt.ijs.si/panovp/OntoDM) ontology, but for generality and reuse purpose it was decided to export it as a separate ontology. Additionaly, the OntoDT ontology is based on and ISO/IEC 11404 (http://www.iso.org/iso/catalogue_detail.htm?csnumber=39479) standard and can be reused used independently by any domain ontology that requires representation and reasoning about general purpose datatypes.", "documentation": "http://www.ontodt.com", "publication": "http://www.sciencedirect.com/science/article/pii/S0020025515005800", "publications": null, "products": null, "taxon": null, "date_released": "2017-12-09T06:25:37", "date_created": "2017-12-09T06:25:37", "home_page": "http://www.ontodt.com", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 417, "nb_individuals": 19, "nb_properties": 16, "max_depth": 12, "max_children": 22, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CTCAE", "name": "Common Terminology Criteria for Adverse Events", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 379, "download_url": "media/ontologies/CTCAE/2/ctcae.owl", "submission_id": 2, "domain": null, "description": "A coding system for reporting adverse events that occur in the course of cancer therapy. It was derived from the Common Toxicity Criteria (CTC) v2.0 and is maintained by the Cancer Therapy Evaluation Program (CTEP) at the National Cancer Institution (NCI).", "documentation": "http://ctep.cancer.gov/protocolDevelopment/electronic_applications/ctc.htm", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-06-14T07:00:00", "date_created": "2011-08-04T19:27:18", "home_page": null, "version": "4.03", "has_ontology_language": "OWL", "nb_classes": 3876, "nb_individuals": 0, "nb_properties": 13, "max_depth": 4, "max_children": 117, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DATACITE", "name": "SPAR DataCite Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 7609, "download_url": "media/ontologies/DATACITE/3/datacite.owl", "submission_id": 3, "domain": null, "description": "The DataCite Ontology (DataCite) is an ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF., The DataCite Ontology is an ontology written in OWL 2 DL to enable the metadata properties of the [DataCite Metadata Kernel Specification version 3.1](https://www.datacite.org/sites/default/files/document/DataCite-MetadataSchema_V31_Final_8-24-2015_0.pdf) to be described in RDF. \n\nThis version of the DataCite Ontology has been completely revised and significantly expanded to permit accurate mapping of this new version of the DataCite Metadata Kernel Specification to RDF., http://purl.org/spar/datacite/datacite.png", "documentation": null, "publication": "['http://dx.doi.org/10.6084/m9.figshare.2075356']", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-23T01:02:02", "date_created": "2025-09-22T00:00:00", "home_page": "http://www.sparontologies.net/ontologies/datacite", "version": "1.2.1", "has_ontology_language": "OWL", "nb_classes": 21, "nb_individuals": 75, "nb_properties": 14, "max_depth": 5, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DC", "name": "Dublin Core", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 244, "download_url": "media/ontologies/DC/3/dc.owl", "submission_id": 3, "domain": null, "description": "The Dublin Core Schema is a small set of vocabulary terms that can be used to describe several kinds of resources. Dublin Core Metadata may be used for multiple purposes, from simple resource description, to combining metadata vocabularies of different metadata standards, to providing interoperability for metadata vocabularies in the Linked Data cloud and Semantic Web implementations.", "documentation": "http://dublincore.org/specifications", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-18T02:01:47", "date_created": "2017-02-18T02:01:47", "home_page": "http://dublincore.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 11, "nb_individuals": 26, "nb_properties": 0, "max_depth": 0, "max_children": 11, "avg_children": 11, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DDIEM", "name": "Drug Database for Inborn Errors of Metabolism (DDIEM) Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3227, "download_url": "media/ontologies/DDIEM/4/ddiem.owl", "submission_id": 4, "domain": null, "description": "DDIEM Ontology for the Drug Database for Inborn Errors of Metabolism. The DDIEM database is a database of therapeutic strategies and treatments for inborn errors of metabolism. These strategies are classified by mechanism and outcome using the DDIEM Ontology. The DDIEM database also includes descriptions of the phenotypes addressed by the treatment, together with drugs and procedures applied.", "documentation": "https://github.com/bio-ontology-research-group/DDIEM", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-12-30T00:00:00", "date_created": "2020-01-02T10:49:42", "home_page": "http://ddiem.phenomebrowser.net/", "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 185, "nb_individuals": 18, "nb_properties": 0, "max_depth": 12, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DDPHENO", "name": "Dictyostelium discoideum phenotype ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6025, "download_url": "media/ontologies/DDPHENO/165/ddpheno.owl", "submission_id": 165, "domain": "anatomy and development", "description": "A structured controlled vocabulary of phenotypes of the slime-mould <i>Dictyostelium discoideum</i>.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/31840793", "title": "dictyBase and the Dicty Stock Center (version 2.0) - a progress report" } ], "products": [ { "id": "ddpheno.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ddpheno.owl" }, { "id": "ddpheno.obo", "ontology_purl": "http://purl.obolibrary.org/obo/ddpheno.obo" } ], "taxon": { "id": "NCBITaxon:44689", "label": "Dictyostelium discoideum" }, "date_released": "2023-08-28T12:19:51.805134", "date_created": "2023-08-28T12:19:51.805146", "home_page": "http://dictybase.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 1373, "nb_individuals": 0, "nb_properties": 0, "max_depth": 11, "max_children": 358, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "8969d7806a9a8139423be12dce150692" } }, { "acronym": "DEB", "name": "Devices, Experimental scaffolds and Biomaterials Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4638, "download_url": "media/ontologies/DEB/7/deb.owl", "submission_id": 7, "domain": null, "description": "An ontology developed to facilitate information curation in the area of medical devices, experimental scaffolds and biomaterials. The ontology was designed to complement existing medical vocabularies, with emphasis on material processing, structures and features associated with biomaterials and experimental scaffolds. It is used as part of an automated text mining pipeline which populates the database of Experimental Biomaterials and their Biological Effect (DEBBIE). \r\nDEBBIE is an EU Horizon 2020 funded project. For more information visit https://projectdebbie.github.io/ ", "documentation": "https://github.com/ProjectDebbie/Ontology_DEB", "publication": "https://onlinelibrary.wiley.com/doi/10.1002/adfm.201909910", "publications": null, "products": null, "taxon": null, "date_released": "2021-06-02T00:00:00", "date_created": "2021-06-02T17:54:15", "home_page": "https://projectdebbie.github.io/", "version": "4.0", "has_ontology_language": "OWL", "nb_classes": 601, "nb_individuals": 0, "nb_properties": 12, "max_depth": 5, "max_children": 56, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DELME1", "name": "deleteme1", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3496, "download_url": "media/ontologies/DELME1/1/delme1.owl", "submission_id": 1, "domain": null, "description": "Test Ontology, Delete on sight", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-03-26T00:00:00", "date_created": "2020-03-27T06:54:48", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 35, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DERMLEX", "name": "Dermatology Lexicon", "status": "Classified", "topics": null, "species": null, "submission": { "id": 462, "download_url": "media/ontologies/DERMLEX/4/dermlex.owl", "submission_id": 4, "domain": null, "description": "Version 1.0 of the American Academy of Dermatology's DermLex: The Dermatology Lexicon, a standardized terminology of dermatologic diagnoses, therapies, procedures, and laboratory tests.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-04-30T07:00:00", "date_created": "2009-04-17T19:12:06", "home_page": "http://www.aad.org/research/lexicon/", "version": "1", "has_ontology_language": "OWL", "nb_classes": 6106, "nb_individuals": 6101, "nb_properties": 18, "max_depth": 10, "max_children": 164, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DERMO", "name": "Human Dermatological Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 749, "download_url": "media/ontologies/DERMO/10/dermo.obo", "submission_id": 10, "domain": null, "description": "Ontology of human dermatologic disease", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-10-13T01:01:38", "date_created": "2015-10-13T01:01:39", "home_page": null, "version": "1.19", "has_ontology_language": "OBO", "nb_classes": 3521, "nb_individuals": 0, "nb_properties": 4, "max_depth": 11, "max_children": 25, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DFO", "name": "Databank Family Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4582, "download_url": "media/ontologies/DFO/1/dfo.owl", "submission_id": 1, "domain": null, "description": "The Databank Family Ontology describes groups of data banks with similar record prompts and originators.", "documentation": "https://github.com/molgenis/ontologies/tree/main/dfo", "publication": "forthcoming", "publications": null, "products": null, "taxon": null, "date_released": "2021-10-08T00:00:00", "date_created": "2021-10-08T12:09:54", "home_page": "https://w3id.org/dfo", "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 10, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DIAGONT", "name": "Diagnostic Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 650, "download_url": "media/ontologies/DIAGONT/1/diagont.owl", "submission_id": 1, "domain": null, "description": "We built a computational diagnostic ontology containing 91 elements, including classes and sub-classes, which are required to conduct SR-MA (Systematic Review - Meta Analysis) for diagnostic studies, that will assist in standardized reporting of diagnostic articles. We also report high percentage of agreement among five observers as a result of the inter-observer agreement that we conducted among them to tag 13 articles using the diagnostic ontology. Moreover, we extend our existing repository CERR-N (Center of Excellence in Research Reporting in Neurosurgery) to include diagnostic studies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-12-15T08:00:00", "date_created": "2012-02-27T21:40:30", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 96, "nb_individuals": 6, "nb_properties": 9, "max_depth": 5, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 12, "indexed": true, "md5sum": null } }, { "acronym": "DISDRIV", "name": "Disease Drivers Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8080, "download_url": "media/ontologies/DISDRIV/5/disdriv.owl", "submission_id": 5, "domain": "health", "description": "Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "disdriv.owl", "ontology_purl": "http://purl.obolibrary.org/obo/disdriv.owl" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2026-04-06T12:43:04.866236", "date_created": "2026-04-06T12:43:04.866239", "home_page": "https://disease-ontology.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 84, "nb_individuals": 0, "nb_properties": 4, "max_depth": 5, "max_children": 22, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "ed4b33c59d028a447c2a303880b361af" } }, { "acronym": "NGBO", "name": "Next Generation Biobanking Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6862, "download_url": "media/ontologies/NGBO/3/ngbo.owl", "submission_id": 3, "domain": "investigations", "description": "The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ngbo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ngbo.owl" } ], "taxon": null, "date_released": "2024-09-09T14:51:05.833523", "date_created": "2024-09-09T14:51:05.833526", "home_page": "https://github.com/Dalalghamdi/NGBO", "version": null, "has_ontology_language": "OWL", "nb_classes": 1516, "nb_individuals": 0, "nb_properties": 129, "max_depth": 16, "max_children": 103, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "cf4517fa7879b6c74d55136025f5ddcc" } }, { "acronym": "PGHDPROV", "name": "PGHDProvo: Context and Provenance Based Standardized Patient Generated Health Data Shared with an Electronic Health Record", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7801, "download_url": "media/ontologies/PGHDPROV/4/pghdprov.owl", "submission_id": 4, "domain": null, "description": "This ontology seeks to capture the provenance and data quality associated with PGHD shared with an EHR. The objective is to have an ontological formal representation of the provenance and contextual data related to PGHD shared with EHR, in order to offer clinicians a means to use PGHD data for decision making and treatment support., Patient Generated Health Data (PGHD) refer to health data collected by patient or their relatives. This ontology seeks to capture information about the data, the provenance and data quality associated with PGHD shared with an EHR.", "documentation": "https://abdullahikawu.github.io/PGHD", "publication": "['https://doi.org/10.1007/978-3-031-95841-0_37']", "publications": null, "products": null, "taxon": null, "date_released": "2021-05-24T00:00:00", "date_created": "2025-12-05T00:00:00", "home_page": "https://w3id.org/pghdprovo", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 23, "nb_individuals": 14, "nb_properties": 30, "max_depth": 4, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SMD_NPLSM_BRST", "name": "Neoplasm_breast_cancer", "status": "Classified", "topics": null, "species": null, "submission": { "id": 339, "download_url": "media/ontologies/SMD_NPLSM_BRST/1/smd_nplsm_brst.owl", "submission_id": 1, "domain": null, "description": "This a subset of Neoplasm_hamartoma view, based on Snomed clinical practice's used terms (Fondazione S.Maugeri anatomic pathology dep.). This subset is not to be meant exhaustive, it has been created in order to built a proper ontology for our project, ONCO-i2b2, through the NCBO Ontology Tools. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-11-16T08:00:00", "date_created": "2011-11-16T15:29:28", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 980, "nb_individuals": 0, "nb_properties": 0, "max_depth": 8, "max_children": 126, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DLO", "name": "Deep Learning Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4637, "download_url": "media/ontologies/DLO/2/dlo.owl", "submission_id": 2, "domain": null, "description": "Taxonomy of Deep Learning networks and layers. TODO: partonomy", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-07-23T00:00:00", "date_created": "2021-07-27T21:03:23", "home_page": "https://github.com/turbomam/deep-learning-ontology", "version": "2021-07-27", "has_ontology_language": "OWL", "nb_classes": 61, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 16, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MIZZOU_CCO", "name": "Care Coordination Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 721, "download_url": "media/ontologies/MIZZOU_CCO/8/mizzou_cco.owl", "submission_id": 8, "domain": null, "description": "Care Coordination ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-11-30T00:00:00", "date_created": "2013-11-05T22:49:24", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 400, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 27, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MLTX", "name": "Machine Learning Methodology Taxonomy Mapping", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4607, "download_url": "media/ontologies/MLTX/1/mltx.owl", "submission_id": 1, "domain": null, "description": "The machine learning methodology taxonomy mapping project is focused on gathering the terminology focused on machine learning and mapping the controlled and users' natural language to form a mapping file across these terminologies. This work was originally associated with dissertation research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-10T00:00:00", "date_created": "2021-09-10T18:25:44", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 13, "nb_individuals": 3, "nb_properties": 3, "max_depth": 1, "max_children": 12, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MMO", "name": "Measurement method ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8103, "download_url": "media/ontologies/MMO/125/mmo.owl", "submission_id": 125, "domain": "health", "description": "A representation of the variety of methods used to make clinical and phenotype measurements. ", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22654893", "title": "Three ontologies to define phenotype measurement data." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24103152", "title": "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications." } ], "products": [ { "id": "mmo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mmo.owl" }, { "id": "mmo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/mmo.obo" } ], "taxon": null, "date_released": "2026-04-13T12:16:01.206493", "date_created": "2026-04-13T12:16:01.206496", "home_page": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000", "version": null, "has_ontology_language": "OWL", "nb_classes": 869, "nb_individuals": 0, "nb_properties": 1, "max_depth": 9, "max_children": 39, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "ff7182536556f4750307016870df43a7" } }, { "acronym": "MMUSDV", "name": "Mouse Developmental Stages", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7141, "download_url": "media/ontologies/MMUSDV/12/mmusdv.owl", "submission_id": 12, "domain": "anatomy and development", "description": "Life cycle stages for Mus Musculus", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mmusdv.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mmusdv.owl" }, { "id": "mmusdv.obo", "ontology_purl": "http://purl.obolibrary.org/obo/mmusdv.obo" } ], "taxon": null, "date_released": "2025-01-27T12:30:30.633252", "date_created": "2025-01-27T12:30:30.633255", "home_page": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv", "version": null, "has_ontology_language": "OWL", "nb_classes": 178, "nb_individuals": 0, "nb_properties": 3, "max_depth": 2, "max_children": 133, "avg_children": 89, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "ae72b64271fd9ce729596cb037ac3ef2" } }, { "acronym": "MOMCARE", "name": "MomCareVocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5824, "download_url": "media/ontologies/MOMCARE/1/momcare.skos", "submission_id": 1, "domain": null, "description": "MomCare Vocabulary", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-05-17T00:00:00", "date_created": "2023-05-17T15:07:31", "home_page": null, "version": "1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 265, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MONO", "name": "Monogenean Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 544, "download_url": "media/ontologies/MONO/2/mono.owl", "submission_id": 2, "domain": null, "description": "Monogenean Ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-10-12T00:00:00", "date_created": "2016-09-28T08:39:10", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 18, "nb_individuals": 3819, "nb_properties": 37, "max_depth": 3, "max_children": 6, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MOOCCIADO", "name": "Molgula occidentalis Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 53, "download_url": "media/ontologies/MOOCCIADO/2/moocciado.obo", "submission_id": 2, "domain": null, "description": " The first ontology describing the anatomy and the development of Molgula occidentalis. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-06T00:00:00", "date_created": "2016-08-04T22:37:12", "home_page": "http://www.aniseed.cnrs.fr/", "version": null, "has_ontology_language": "OBO", "nb_classes": 856, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 355, "avg_children": 85, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MOOCCUADO", "name": "Molgula occulta Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 13, "download_url": "media/ontologies/MOOCCUADO/2/mooccuado.obo", "submission_id": 2, "domain": null, "description": "The first ontology describing the anatomy and the development of Molgula occulta. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-06T00:00:00", "date_created": "2016-08-04T22:32:06", "home_page": "http://www.aniseed.cnrs.fr/", "version": null, "has_ontology_language": "OBO", "nb_classes": 856, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 355, "avg_children": 85, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MRO", "name": "MHC Restriction Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7959, "download_url": "media/ontologies/MRO/67/mro.owl", "submission_id": 67, "domain": "chemistry and biochemistry", "description": "An ontology for Major Histocompatibility Complex (MHC) restriction in experiments", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mro.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mro.owl" } ], "taxon": null, "date_released": "2026-02-16T12:59:00.294753", "date_created": "2026-02-16T12:59:00.294758", "home_page": "https://github.com/IEDB/MRO", "version": null, "has_ontology_language": "OWL", "nb_classes": 51436, "nb_individuals": 0, "nb_properties": 20, "max_depth": 8, "max_children": 4732, "avg_children": 49, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "40aa583f1ae58e5f03b903f3efc8aa28" } }, { "acronym": "MS", "name": "Mass spectrometry ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8027, "download_url": "media/ontologies/MS/236/ms.owl", "submission_id": 236, "domain": "investigations", "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/23482073", "title": "The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary." } ], "products": [ { "id": "ms.obo", "ontology_purl": "http://purl.obolibrary.org/obo/ms.obo" }, { "id": "ms.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ms.owl" } ], "taxon": null, "date_released": "2026-03-16T13:11:41.140995", "date_created": "2026-03-16T13:11:41.141002", "home_page": "http://www.psidev.info/groups/controlled-vocabularies", "version": null, "has_ontology_language": "OWL", "nb_classes": 4085, "nb_individuals": 0, "nb_properties": 12, "max_depth": 8, "max_children": 363, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "4cf268b208325270d01fc00656a4097e" } }, { "acronym": "MSTDE", "name": "Minimal Standard Terminology of Digestive Endoscopy", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 393, "download_url": "media/ontologies/MSTDE/9/mstde.umls", "submission_id": 9, "domain": null, "description": "Metathesaurus Version of Minimal Standard Terminology Digestive Endoscopy. Bethesda, MD: National Library of Medicine, 2001.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:27:00", "date_created": "2017-02-06T21:27:00", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 1826, "nb_individuals": 0, "nb_properties": 30, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MSR", "name": "Mammography screening recommendation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5527, "download_url": "media/ontologies/MSR/1/msr.owl", "submission_id": 1, "domain": null, "description": "This is an ontology that represents a variety of entities and classifications that share the knowledge of the recommendations provided by the guideline from the American Cancer Society on Breast Cancer Screening for Women at Average Risk.\r\n\r\nThis ontology was developed as part of an ontology course on UdelaR Univeristy. Mentored by Regina Motz and Edelweis Rohrer", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-04T00:00:00", "date_created": "2022-12-04T16:15:18", "home_page": null, "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 16, "nb_individuals": 17, "nb_properties": 13, "max_depth": 4, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEUROBRG", "name": "NeuroBridge Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6310, "download_url": "media/ontologies/NEUROBRG/2/neurobrg.owl", "submission_id": 2, "domain": null, "description": "NeuroBridge ontology is being developed as part of the NeuroBridge project to implement FAIR principles for neuroimaging and neurophysiology data using computable provenance metadata. The NeuroBridge ontology extends the W3C PROV ontology and the ProvCaRe ontology with terms from the SchizConnect and Data Bridge ontology aligned and merged into the original class structure of the ProvCaRe ontology. ", "documentation": "https://neurobridges.org/", "publication": "https://neurobridges.org/", "publications": null, "products": null, "taxon": null, "date_released": "2023-06-21T00:00:00", "date_created": "2024-01-05T03:06:08", "home_page": "https://portal.neurobridges.org/", "version": "1.0 (Release 2023)", "has_ontology_language": "OWL", "nb_classes": 667, "nb_individuals": 4, "nb_properties": 43, "max_depth": 10, "max_children": 26, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NeuroFMA", "name": "NeuroFMA", "status": "Classified", "topics": null, "species": null, "submission": { "id": 424, "download_url": "media/ontologies/NeuroFMA/1/neurofma.owl", "submission_id": 1, "domain": null, "description": "A view of FMA for neuroanatomy", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-07-14T07:00:00", "date_created": "2009-09-18T22:04:17", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 2302, "nb_individuals": 7340, "nb_properties": 40, "max_depth": 18, "max_children": 43, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEUROTRANSH", "name": "NeuroMorpho.Org NT cell types", "status": "Classified", "topics": null, "species": null, "submission": { "id": 866, "download_url": "media/ontologies/NEUROTRANSH/4/neurotransh.owl", "submission_id": 4, "domain": null, "description": "A hierarchy of neuron types based on Neurotransmitter.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T02:12:04", "date_created": "2017-11-28T02:12:04", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 7, "nb_properties": 0, "max_depth": 2, "max_children": 7, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MOOCULADO", "name": "Molgula oculata Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 670, "download_url": "media/ontologies/MOOCULADO/2/mooculado.obo", "submission_id": 2, "domain": null, "description": "The first ontology describing the anatomy and the development of Molgula oculata. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-06T00:00:00", "date_created": "2016-08-04T22:42:01", "home_page": "http://www.aniseed.cnrs.fr/", "version": null, "has_ontology_language": "OBO", "nb_classes": 856, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 355, "avg_children": 85, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MOP", "name": "Molecular Process Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5086, "download_url": "media/ontologies/MOP/8/mop.owl", "submission_id": 8, "domain": null, "description": "Processes at the molecular level", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mop.owl", "title": "Molecular Process Ontology", "ontology_purl": "http://purl.obolibrary.org/obo/mop.owl" } ], "taxon": null, "date_released": "2022-05-23T12:23:49.509737", "date_created": "2022-05-23T12:23:49.509763", "home_page": "https://github.com/rsc-ontologies/rxno", "version": null, "has_ontology_language": "OWL", "nb_classes": 3686, "nb_individuals": 0, "nb_properties": 11, "max_depth": 13, "max_children": 168, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "ad8dbe128e9f1e78e1b70ca0c2109e2b" } }, { "acronym": "MOSAIC", "name": "The MOSAiC Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4618, "download_url": "media/ontologies/MOSAIC/4/mosaic.owl", "submission_id": 4, "domain": null, "description": "Ontology to support Semantic Annotation of MOSAiC datasets housed in the Arctic Data Center (https://arcticdata.io).", "documentation": "https://github.com/DataONEorg/sem-prov-ontologies", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-10T00:00:00", "date_created": "2021-09-11T02:16:15", "home_page": "https://github.com/DataONEorg/sem-prov-ontologies", "version": "Version 1.0.1", "has_ontology_language": "OWL", "nb_classes": 242, "nb_individuals": 9414, "nb_properties": 36, "max_depth": 3, "max_children": 203, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EHDAA2", "name": "Human developmental anatomy, abstract", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7873, "download_url": "media/ontologies/EHDAA2/34/ehdaa2.owl", "submission_id": 34, "domain": "anatomy and development", "description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22973865", "title": "A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20)." } ], "products": [ { "id": "ehdaa2.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ehdaa2.owl" }, { "id": "ehdaa2.obo", "ontology_purl": "http://purl.obolibrary.org/obo/ehdaa2.obo" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2026-01-12T17:42:35.144599", "date_created": "2026-01-12T17:42:35.144601", "home_page": "https://github.com/obophenotype/human-developmental-anatomy-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 2743, "nb_individuals": 0, "nb_properties": 10, "max_depth": 12, "max_children": 361, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "36290a538dbe493bb0779d1d0961dcd1" } }, { "acronym": "ELD", "name": "EthiopianListOfDiseases", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4666, "download_url": "media/ontologies/ELD/5/eld.skos", "submission_id": 5, "domain": null, "description": "This is the list of Ethiopian Diseases approved by MOH Ethiopia", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-07-23T00:00:00", "date_created": "2021-11-01T10:17:06", "home_page": null, "version": "4", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 2077, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ELIG", "name": "Eligibility Feature Hierarchy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 579, "download_url": "media/ontologies/ELIG/1/elig.owl", "submission_id": 1, "domain": null, "description": "We derived a set of 1,437 eligibility features that were organized into a feature hierarchy using 80 breast cancer trials. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-05-07T07:00:00", "date_created": "2013-05-07T20:09:37", "home_page": null, "version": "v. 1.0", "has_ontology_language": "OWL", "nb_classes": 29, "nb_individuals": 2, "nb_properties": 3, "max_depth": 5, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ELTER_CL", "name": "eLTER Controlled Lists", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8038, "download_url": "media/ontologies/ELTER_CL/58/elter_cl.skos", "submission_id": 58, "domain": null, "description": "eLTER Controlled Lists are used in different environmental projects related to the eLTER community.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-14T05:04:33", "date_created": "2026-03-13T00:00:00", "home_page": null, "version": "1.1.1", "has_ontology_language": "SKOS", "nb_classes": 32, "nb_individuals": 662, "nb_properties": 11, "max_depth": 1, "max_children": 27, "avg_children": 27, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EMAPA", "name": "Mouse Developmental Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8101, "download_url": "media/ontologies/EMAPA/29/emapa.owl", "submission_id": 29, "domain": "anatomy and development", "description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/9651497", "title": "An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/23972281", "title": "EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/26208972", "title": "Mouse Anatomy Ontologies: Enhancements and Tools for Exploring and Integrating Biomedical Data" }, { "id": "https://doi.org/10.1016/B978-0-12-800043-4.00023-3", "title": "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)" } ], "products": [ { "id": "emapa.owl", "ontology_purl": "http://purl.obolibrary.org/obo/emapa.owl" }, { "id": "emapa.obo", "ontology_purl": "http://purl.obolibrary.org/obo/emapa.obo" } ], "taxon": { "id": "NCBITaxon:10088", "label": "Mus" }, "date_released": "2026-04-13T12:10:20.424631", "date_created": "2026-04-13T12:10:20.424639", "home_page": "http://www.informatics.jax.org/expression.shtml", "version": null, "has_ontology_language": "OWL", "nb_classes": 8882, "nb_individuals": 0, "nb_properties": 9, "max_depth": 10, "max_children": 4416, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "ac7c63c5f64c044c8fa74c58f3889420" } }, { "acronym": "EMIF-AD", "name": "EMIF-AD ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4160, "download_url": "media/ontologies/EMIF-AD/3/emif-ad.owl", "submission_id": 3, "domain": null, "description": "Ontology developed as part of European Medical Information Framework' s (EMIF) Alzheimer’s disease (AD) project. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-12-10T00:00:00", "date_created": "2021-01-05T01:47:43", "home_page": "http://www.emif.eu/emif-ad-2/", "version": "0.0.2", "has_ontology_language": "OWL", "nb_classes": 700, "nb_individuals": 6, "nb_properties": 6, "max_depth": 6, "max_children": 43, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EMO", "name": "Enzyme Mechanism Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 485, "download_url": "media/ontologies/EMO/1/emo.owl", "submission_id": 1, "domain": null, "description": "This ontology describes the components of an enzyme and its reaction mechanism including the roles that the components play in the reaction mechanism.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-06-29T00:00:00", "date_created": "2015-09-23T10:23:31", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 160, "nb_individuals": 0, "nb_properties": 26, "max_depth": 4, "max_children": 28, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ENDOCRINEH", "name": "NeuroMorpho.Org endocrine system", "status": "Classified", "topics": null, "species": null, "submission": { "id": 630, "download_url": "media/ontologies/ENDOCRINEH/2/endocrineh.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of regions in endocrine system.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-09-16T01:02:01", "date_created": "2016-09-16T01:02:01", "home_page": null, "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 1, "nb_properties": 0, "max_depth": 0, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MSTDE-FRE", "name": "Minimal Standard Terminology of Digestive Endoscopy, French", "status": "Classified", "topics": null, "species": null, "submission": { "id": 191, "download_url": "media/ontologies/MSTDE-FRE/9/mstde-fre.umls", "submission_id": 9, "domain": null, "description": "Metathesaurus Version of Minimal Standard Terminology Digestive Endoscopy, French Translation, 2001", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:27:00", "date_created": "2017-02-06T21:27:00", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 1826, "nb_individuals": 0, "nb_properties": 30, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MVAONT", "name": "Mosquito Vector Association Ontology with Biocontrol Agents", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6360, "download_url": "media/ontologies/MVAONT/2/mvaont.owl", "submission_id": 2, "domain": null, "description": "MVAont is about the description of Indian Mosquito Vectors and their Associations with Biocontrol Agents", "documentation": null, "publication": "https://journals.lww.com/jvbd/abstract/9000/mbors__mosquito_vector_biocontrol_ontology_and.99949.aspx", "publications": null, "products": null, "taxon": null, "date_released": "2022-09-05T00:00:00", "date_created": "2024-01-27T10:53:01", "home_page": null, "version": "Version2", "has_ontology_language": "OWL", "nb_classes": 175, "nb_individuals": 0, "nb_properties": 3, "max_depth": 5, "max_children": 81, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MWLA", "name": "Medical Web Lifestyle Aggregator", "status": "Classified", "topics": null, "species": null, "submission": { "id": 130, "download_url": "media/ontologies/MWLA/1/mwla.owl", "submission_id": 1, "domain": null, "description": "This ontology designed and developed in order to represent the detected intentions from the Web Lifestyle Data Aggregator. In particular, it seeks to represent what is involved in the gathering of data from the web and social lifestyle of user on the Internet. We decided, therefore, to develop the ontology using the Protégé v5.0, a free, open-source ontology editor from the Stanford University. The outcome of Protégé is available on the following URL:\r\nhttp://carre.kmi.open.ac.uk/ontology/lifestyle.owl\r\nThe presented ontology is generic and can support different type of providers (e.g. web searches, Facebook, Twitter etc.). Additionally, the predefined intentions are also generic supporting the majority of intentions in the Web. In the context of CARRE, we utilize, as a first attempt, the web searches as provider and we only upload the relevant intentions (health and travel) to CARRE in the private RDF repository.\r\nA user (representing an individual person whose data is being represented using the terms of this ontology) has connections. A connection represents that a Web Lifestyle Data Aggregator of a particular personal computer of user provides intentions for particulars providers. A connection is therefore associated with a UUID (Universal Unique Identifier) that represents an installation of the aggregator. A provider can be the web searches, Facebook or Twitter. A measurement is associated with a provider and a connection in order to declare the connection (i.e. the Web Lifestyle Data Aggregator of a particular personal computer) from which a measurement came.\r\nEvery measurement must have a date at which the detected intention was taken, a weight which defines the importance of an intention and of course the detected intention that is only relevant to CARRE. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-26T00:00:00", "date_created": "2015-04-26T09:02:23", "home_page": "https://www.carre-project.eu/innovation/web-lifestyle-data-aggregator/", "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 32, "nb_individuals": 228, "nb_properties": 9, "max_depth": 1, "max_children": 25, "avg_children": 16, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MWS22", "name": "Svu ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5441, "download_url": "media/ontologies/MWS22/1/mws22.owl", "submission_id": 1, "domain": null, "description": "This ontology is about svu university", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-10-23T00:00:00", "date_created": "2022-10-23T14:58:38", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 10, "nb_individuals": 62, "nb_properties": 8, "max_depth": 3, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MYFACILITYNAME", "name": "MY FACILITY NAME", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4372, "download_url": "media/ontologies/MYFACILITYNAME/6/myfacilityname.skos", "submission_id": 6, "domain": null, "description": "This is the first vocabulary", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-03-01T00:00:00", "date_created": "2021-03-27T18:26:10", "home_page": null, "version": "5", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 13, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NAMBOBI", "name": "NAMBOBI'S ONTOLOGY", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4494, "download_url": "media/ontologies/NAMBOBI/1/nambobi.owl", "submission_id": 1, "domain": null, "description": "OUT PATIENT REGISTER FOR UGANDA", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-05-24T00:00:00", "date_created": "2021-05-24T13:35:45", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 9, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NANDO", "name": "Nanbyo Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7600, "download_url": "media/ontologies/NANDO/19/nando.owl", "submission_id": 19, "domain": null, "description": "Creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan.\r\n", "documentation": "https://nanbyodata.jp", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2021-07-23T00:00:00", "date_created": "2025-09-11T00:00:00", "home_page": "https://nanbyodata.jp", "version": "2025-08-26", "has_ontology_language": "OWL", "nb_classes": 2985, "nb_individuals": 2604, "nb_properties": 3, "max_depth": 8, "max_children": 87, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NBO", "name": "Neuro Behavior Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5936, "download_url": "media/ontologies/NBO/38/nbo.owl", "submission_id": 38, "domain": "biological systems", "description": "An ontology of human and animal behaviours and behavioural phenotypes", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24177753", "title": "Analyzing gene expression data in mice with the Neuro Behavior Ontology" } ], "products": [ { "id": "nbo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/nbo.owl" } ], "taxon": null, "date_released": "2023-07-10T12:45:42.038374", "date_created": "2023-07-10T12:45:42.038387", "home_page": "https://github.com/obo-behavior/behavior-ontology/", "version": null, "has_ontology_language": "OWL", "nb_classes": 4548, "nb_individuals": 0, "nb_properties": 239, "max_depth": 35, "max_children": 106, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7236c44b04d61e3cdb1b52a0aa0803c7" } }, { "acronym": "NCBITAXON", "name": "NCBI organismal classification", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3549, "download_url": "media/ontologies/NCBITAXON/16/ncbitaxon.owl", "submission_id": 16, "domain": "taxonomy", "description": "An ontology representation of the NCBI organismal taxonomy", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ncbitaxon.owl", "title": "Main release", "ontology_purl": "http://purl.obolibrary.org/obo/ncbitaxon.owl" }, { "id": "ncbitaxon.obo", "title": "OBO Format version of Main release", "ontology_purl": "http://purl.obolibrary.org/obo/ncbitaxon.obo" }, { "id": "ncbitaxon/subsets/taxslim.owl", "page": "https://github.com/obophenotype/ncbitaxon/blob/master/subsets/README.md", "title": "taxslim", "ontology_purl": "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl" }, { "id": "ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl", "page": "https://github.com/obophenotype/ncbitaxon/blob/master/subsets/README.md", "title": "taxslim disjointness axioms", "ontology_purl": "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl" } ], "taxon": null, "date_released": "2020-04-20T15:23:43.471585", "date_created": "2020-04-20T15:23:43.471643", "home_page": "https://github.com/obophenotype/ncbitaxon", "version": null, "has_ontology_language": "OWL", "nb_classes": 2241110, "nb_individuals": 0, "nb_properties": 0, "max_depth": 38, "max_children": 43413, "avg_children": 11, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c046b4d60dbbd7981c986562a766c517" } }, { "acronym": "NCBITAXONSH", "name": "NCBI Taxonomy Ontology - Shrinked version", "status": "Classified", "topics": [], "species": [], "submission": { "id": 1881, "download_url": "media/ontologies/NCBITAXONSH/3/ncbitaxonsh.owl", "submission_id": 3, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-10-08T08:35:17.291738", "date_created": "2018-10-08T08:35:17.291706", "home_page": null, "version": "0.3", "has_ontology_language": "OWL", "nb_classes": 356489, "nb_individuals": 0, "nb_properties": 0, "max_depth": 35, "max_children": 33808, "avg_children": 149, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NCCNEHR", "name": "NCCN EHR Oncology Categories", "status": "Classified", "topics": null, "species": null, "submission": { "id": 750, "download_url": "media/ontologies/NCCNEHR/1/nccnehr.owl", "submission_id": 1, "domain": null, "description": "The NCCN EHR Oncology Advisory Group was formed to address the high variance in oncology history documentation within EHR systems. Specifically, there is a lack of standardization in the names of oncology history categories across institutions. Moreover, no synonym list or mapping currently exists between the varied category names. Furthermore, oncology history documentation is often inconsistent, incomplete, and not updated appropriately. The NCCN EHR Oncology Advisory Group has established best practices and is working with EHR vendors to implement and enhance tools for documentation of oncology history. This ontology is a result of the work of the group, and provides users with a list of oncology history categories and synonyms. It is our sincere hope that this work can form the basis of improving standardization and interoperability of oncology history documentation within EHR systems.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-11T00:00:00", "date_created": "2017-10-11T18:39:22", "home_page": "https://www.nccn.org/", "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 14, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 14, "avg_children": 14, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NCI", "name": "human anatomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1243, "download_url": "media/ontologies/NCI/1/nci.owl", "submission_id": 1, "domain": null, "description": "human anatomy", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-02-15T00:00:00", "date_created": "2018-02-16T01:04:46", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 3304, "nb_individuals": 0, "nb_properties": 2, "max_depth": 11, "max_children": 125, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHY", "name": "physiotherapy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7005, "download_url": "media/ontologies/PHY/2/phy.owl", "submission_id": 2, "domain": null, "description": "This ontology contains structured data for five physiotherapy exercises tailored for lower limb rehabilitation. Each exercise is aimed at supporting patients post-surgery, with a particular focus on preventing complications like deep vein thrombosis (DVT) and improving strength, mobility, and blood circulation in the legs.\r\n\r\nIncluded Exercises:\r\nAnkle Pump Exercise: Enhances blood flow in the lower limbs by flexing and extending the ankle, helping to prevent DVT.\r\nQuad Set Exercise: Strengthens the quadriceps by engaging the knee in gentle extension, aiding recovery and muscle endurance.\r\nHeel Slide Exercise: Improves knee mobility by sliding the heel toward the buttocks, promoting flexibility.\r\nStraight Leg Raise Exercise: Strengthens hip flexors and quadriceps by lifting a straight leg, enhancing lower limb stability.\r\nGlute Bridge Exercise: Activates the glutes and stabilizes the hips through lifting movements, improving strength and control.\r\nEach exercise entry includes details such as targeted body parts, primary muscles, joint movements, instructions, precautions, progression criteria, and patient response metrics. The file leverages biomedical ontologies like OBI, ICF, and SNOMED CT for interoperability, making it suitable for integration into healthcare or rehabilitation applications.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-11-12T00:00:00", "date_created": "2024-11-12T13:16:24", "home_page": "https://app.thrombus.eu/ontology/physiotherapy", "version": "0.0.2", "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 5, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PMAPP-PMO", "name": "PMO Precision Medicine Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4141, "download_url": "media/ontologies/PMAPP-PMO/1/pmapp-pmo.owl", "submission_id": 1, "domain": null, "description": "The Precision Medicine Ontology (PMO) has been developed as a standardized ontology for human precision medicine with consistent, reusable and sustainable descriptions of human disease terms, genomic molecular, phenotype characteristics and related medical vocabulary disease concepts through collaborative efforts of researchers at Institute of Medical Information, Chinese Academy of Medical Sciences. The Precision Medicine Ontology focuses on the development of a high level patients-centric ontology for the academic research, thus, it systematically integrates biomedicine vocabularies from GO, NCBI Gene, DrugBank, HPO, MeSH, SNOMED CT, etc. This work is supported by the National Key Research and Development Program of China (Precision Medicine Knowledge Base, Grant No. 2016YFC0901901).", "documentation": null, "publication": "https://www.aimspress.com/article/10.3934/mbe.2020227/fulltext.html", "publications": null, "products": null, "taxon": null, "date_released": "2020-12-16T00:00:00", "date_created": "2020-12-17T02:38:23", "home_page": "http://www.phoc.org.cn/pmo/", "version": "4.0", "has_ontology_language": "OWL", "nb_classes": 76155, "nb_individuals": 0, "nb_properties": 95, "max_depth": 14, "max_children": 469, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SOHO", "name": "Social Determinants of Health Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6936, "download_url": "media/ontologies/SOHO/5/soho.owl", "submission_id": 5, "domain": null, "description": "SOHO has terminologies covering societal factors, such as where a person was born, grew up, works, lives, etc., along with socio-economic and community factors that affect an individual’s health.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-10-10T00:00:00", "date_created": "2024-10-10T16:44:03", "home_page": null, "version": "4", "has_ontology_language": "OWL", "nb_classes": 172, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 22, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SOLO", "name": "Solitude Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8000, "download_url": "media/ontologies/SOLO/2/solo.owl", "submission_id": 2, "domain": null, "description": "The Solitude Ontology contains terms for defining and classifying concepts related to solitude, including its dimensions, experiences, and outcomes. Its concepts and relationships support the development of tools and resources that enhance understanding of solitude. \r\n\r\nThe Solitude Ontology is developed as a subset of (http://purl.obolibrary.org/obo/phases.owl)., and outcomes. Its concepts and relationships support the development of tools and resources that enhance understanding of solitude. The Solitude Ontology is developed as a subset of (http://purl.obolibrary.org/obo/phases.owl). , and outcomes. Its concepts and relationships support the development of tools and resources that enhance understanding of solitude. The Solitude Ontology is developed as a subset of (http://purl.obolibrary.org/obo/phases.owl). Issues and term requests can be submitted at (https://github.com/Buffalo-Ontology-Group/phases/issues).", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-27T02:15:06", "date_created": "2026-02-26T00:00:00", "home_page": null, "version": "2026-02-25", "has_ontology_language": "OWL", "nb_classes": 58, "nb_individuals": 35, "nb_properties": 0, "max_depth": 10, "max_children": 9, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NCBI_NMOsp_1_0_0", "name": "NeuroMorpho.Org Species Ontology v.1.0.0", "status": "Classified", "topics": null, "species": null, "submission": { "id": 529, "download_url": "media/ontologies/NCBI_NMOsp_1_0_0/1/ncbi_nmosp_1_0_0.obo", "submission_id": 1, "domain": null, "description": "A lighter version of the NCBI taxonomy that is customized for the NeuroMorpho.Org species.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-06-14T02:47:12", "home_page": "", "version": "1", "has_ontology_language": "OBO", "nb_classes": 438, "nb_individuals": 0, "nb_properties": 0, "max_depth": 36, "max_children": 51, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NCBI_NMOsp_1_2_2", "name": "NeuroMorpho.Org Species Ontology v.1.2.2", "status": "Classified", "topics": null, "species": null, "submission": { "id": 490, "download_url": "media/ontologies/NCBI_NMOsp_1_2_2/1/ncbi_nmosp_1_2_2.obo", "submission_id": 1, "domain": null, "description": "A lighter version of the NCBI taxonomy that is customized for the NeuroMorpho.Org species. The ontology also include NIFSTD, Rat strain and Jax mice terms that are arranged in a single parent hierarchical tree.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-08-15T07:00:00", "date_created": "2010-08-16T01:31:08", "home_page": "", "version": "1.2.2", "has_ontology_language": "OBO", "nb_classes": 738, "nb_individuals": 0, "nb_properties": 1, "max_depth": 36, "max_children": 410, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ENM", "name": "eNanoMapper", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 3140, "download_url": "media/ontologies/ENM/17/enm.owl", "submission_id": 17, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-11-30T14:14:21.900195", "date_created": "2019-11-30T14:14:21.900145", "home_page": null, "version": "6.0", "has_ontology_language": "OWL", "nb_classes": 12751, "nb_individuals": 464, "nb_properties": 5, "max_depth": 12, "max_children": 1427, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ENMT", "name": "eNanoMapper", "status": "Unloadable", "topics": [ "nanomaterials" ], "species": [], "submission": { "id": 3139, "download_url": "media/ontologies/ENMT/1/enmt.owl", "submission_id": 1, "domain": null, "description": "The eNanoMapper ontology covers the full scope of terminology needed to support research into nanomaterial safety. It builds on multiple pre-existing external ontologies such as the NanoParticle Ontology.", "documentation": "http://enanomapper.net/ontology", "publication": "http://enanomapper.net/library", "publications": null, "products": null, "taxon": null, "date_released": "2019-11-30T13:22:16.788174", "date_created": "2019-11-30T13:22:16.788076", "home_page": "http://enanomapper.net/", "version": "6.0", "has_ontology_language": "OWL", "nb_classes": 12751, "nb_individuals": 464, "nb_properties": 5, "max_depth": 12, "max_children": 1427, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NATPRO", "name": "Natural Products Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 736, "download_url": "media/ontologies/NATPRO/1/natpro.owl", "submission_id": 1, "domain": null, "description": "An ontology for describing biological activities of natural products.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-02-08T08:00:00", "date_created": "2012-02-08T11:39:01", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 9465, "nb_individuals": 22012, "nb_properties": 64, "max_depth": 19, "max_children": 204, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FAST-CHRONO", "name": "FAST (Faceted Access of Subject Terminology) Chronological Facet", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1477, "download_url": "media/ontologies/FAST-CHRONO/1/fast-chrono.skos", "submission_id": 1, "domain": null, "description": "FAST is an enumerative, faceted subject heading schema derived from the Library of Congress Subject Headings (LCSH). The purpose of adapting the LCSH with a simplified syntax to create FAST is to retain the very rich vocabulary of LCSH while making the schema easier to understand, control, apply, and use. This facet includes chronological terms derived from LCSH.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-05-07T00:00:00", "date_created": "2018-05-07T23:55:15", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 681, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FAST-EVENT", "name": "FAST (Faceted Application of Subject Terminology) Event", "status": "Classified", "topics": null, "species": null, "submission": { "id": 470, "download_url": "media/ontologies/FAST-EVENT/1/fast-event.owl", "submission_id": 1, "domain": null, "description": "FAST is an enumerative, faceted subject heading schema derived from the Library of Congress Subject Headings (LCSH). The purpose of adapting the LCSH with a simplified syntax to create FAST is to retain the very rich vocabulary of LCSH while making the schema easier to understand, control, apply, and use. The schema maintains upward compatibility with LCSH, and any valid set of LC subject headings can be converted to FAST headings. This is the Event facet.", "documentation": "http://www.oclc.org/research/themes/data-science/fast/download.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-14T00:00:00", "date_created": "2017-08-29T18:38:35", "home_page": "http://www.oclc.org/research/themes/data-science/fast/download.html", "version": null, "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 15696, "nb_properties": 0, "max_depth": 0, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FAST-EVENT-SKOS", "name": "FAST (Faceted Application of Subject Terminology) Event Facet", "status": "Classified", "topics": null, "species": null, "submission": { "id": 187, "download_url": "media/ontologies/FAST-EVENT-SKOS/1/fast-event-skos.skos", "submission_id": 1, "domain": null, "description": "This is a test of submitting FAST-EVENT with Format dropdown set to SKOS (instead of OWL)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-14T00:00:00", "date_created": "2017-08-30T15:51:48", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 4, "nb_individuals": 15696, "nb_properties": 0, "max_depth": 0, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEST", "name": "Nutritional Epidemiological STandards", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1778, "download_url": "media/ontologies/NEST/5/nest.owl", "submission_id": 5, "domain": null, "description": "It represents standards for nutritional epidemiological studies in ontology format. In the strict sense, it is not an ontology. Its hierarchy follows structure of each standard, not OWL rules.", "documentation": null, "publication": "https://www.ncbi.nlm.nih.gov/pubmed/28916566", "publications": null, "products": null, "taxon": null, "date_released": "2018-08-20T00:00:00", "date_created": "2018-08-27T09:13:11", "home_page": "https://github.com/cyang0128/Nutritional-epidemiological-ontologies", "version": "V1.2", "has_ontology_language": "OWL", "nb_classes": 249, "nb_individuals": 0, "nb_properties": 0, "max_depth": 7, "max_children": 17, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NETFLIX", "name": "Netflix Class Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5914, "download_url": "media/ontologies/NETFLIX/1/netflix.owl", "submission_id": 1, "domain": null, "description": "Learning how to biuld ontologies during UHC 2023 Summer Institute", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-06-28T00:00:00", "date_created": "2023-06-28T19:29:32", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 20, "nb_individuals": 21, "nb_properties": 5, "max_depth": 3, "max_children": 7, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBCS", "name": "Ontology of Biological and Clinical Statistics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6286, "download_url": "media/ontologies/OBCS/16/obcs.owl", "submission_id": 16, "domain": "information technology", "description": "A biomedical ontology in the domain of biological and clinical statistics.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "obcs.owl", "ontology_purl": "http://purl.obolibrary.org/obo/obcs.owl" } ], "taxon": null, "date_released": "2023-12-25T12:50:16.882377", "date_created": "2023-12-25T12:50:16.882384", "home_page": "https://github.com/obcs/obcs", "version": null, "has_ontology_language": "OWL", "nb_classes": 1211, "nb_individuals": 24, "nb_properties": 62, "max_depth": 12, "max_children": 36, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "f8cdfa75a63a3ac311106ff6c7423a4f" } }, { "acronym": "FAST-FORMGENRE", "name": "FAST (Faceted Application of Subject Terminology) FormGenre facet", "status": "Classified", "topics": null, "species": null, "submission": { "id": 108, "download_url": "media/ontologies/FAST-FORMGENRE/1/fast-formgenre.skos", "submission_id": 1, "domain": null, "description": "FAST is an enumerative, faceted subject heading schema derived from the Library of Congress Subject Headings (LCSH). The purpose of adapting the LCSH with a simplified syntax to create FAST is to retain the very rich vocabulary of LCSH while making the schema easier to understand, control, apply, and use.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-14T00:00:00", "date_created": "2017-09-06T20:43:48", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 3287, "nb_properties": 0, "max_depth": 0, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FAST-GENREFORM", "name": "FAST (Faceted Access of Subject Terminology) GenreForm", "status": "Classified", "topics": null, "species": null, "submission": { "id": 584, "download_url": "media/ontologies/FAST-GENREFORM/1/fast-genreform.owl", "submission_id": 1, "domain": null, "description": "FAST is an enumerative, faceted subject heading schema derived from the Library of Congress Subject Headings (LCSH).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-09-10T00:00:00", "date_created": "2017-09-10T21:07:40", "home_page": "http://www.oclc.org/research/themes/data-science/fast/download.html", "version": null, "has_ontology_language": "OWL", "nb_classes": 3, "nb_individuals": 3287, "nb_properties": 0, "max_depth": 0, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FASTO", "name": "HL7 FHIR and SSN ontology based Type 1 Diabetes Mellitus Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1945, "download_url": "media/ontologies/FASTO/2/fasto.owl", "submission_id": 2, "domain": null, "description": "FHIR And SSN based Type 1 diabetes Ontology (FASTO) is an OWL 2 ontology for real time management of insulin for diabetes patients especially type 1 diabetics. The ontology is based on BFO as the top-level ontology, SSN sensor ontology, and HL7 FHIR standard. This ontology can support the development of mobile health applications. It supports the interoperability between clinical decision support systems on a cloud environment, distributed electronic health records, mobile devices, and wireless body area networks.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-09-23T00:00:00", "date_created": "2018-10-04T01:20:00", "home_page": null, "version": "2015-11-20", "has_ontology_language": "OWL", "nb_classes": 9577, "nb_individuals": 460, "nb_properties": 658, "max_depth": 21, "max_children": 91, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBI", "name": "Ontology for Biomedical Investigations", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8090, "download_url": "media/ontologies/OBI/64/obi.owl", "submission_id": 64, "domain": "investigations", "description": "An integrated ontology for the description of life-science and clinical investigations", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/27128319", "title": "The Ontology for Biomedical Investigations" } ], "products": [ { "id": "obi.owl", "title": "OBI", "description": "The full version of OBI in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/obi.owl" }, { "id": "obi.obo", "title": "OBI in OBO", "description": "The OBO-format version of OBI", "ontology_purl": "http://purl.obolibrary.org/obo/obi.obo" }, { "id": "obi/obi_core.owl", "title": "OBI Core", "description": "A collection of important high-level terms and their relations from OBI and other ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/obi/obi_core.owl" }, { "id": "obi/obi-base.owl", "title": "OBI Base module", "description": "Base module for OBI", "ontology_purl": "http://purl.obolibrary.org/obo/obi/obi-base.owl" } ], "taxon": null, "date_released": "2026-04-06T13:24:35.341147", "date_created": "2026-04-06T13:24:35.341152", "home_page": "http://obi-ontology.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 5178, "nb_individuals": 303, "nb_properties": 91, "max_depth": 16, "max_children": 330, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c8a11b6c9b1a6a5fccdedc73699b831d" } }, { "acronym": "FAST-TOPICAL", "name": "FAST (Faceted Application of Subject Terminology) Topical Facet", "status": "Classified", "topics": null, "species": null, "submission": { "id": 411, "download_url": "media/ontologies/FAST-TOPICAL/1/fast-topical.skos", "submission_id": 1, "domain": null, "description": "AST is an enumerative, faceted subject heading schema derived from the Library of Congress Subject Headings (LCSH). The purpose of adapting the LCSH with a simplified syntax to create FAST is to retain the very rich vocabulary of LCSH while making the schema easier to understand, control, apply, and use.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-14T00:00:00", "date_created": "2017-09-06T20:47:53", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 583314, "nb_properties": 0, "max_depth": 0, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEIC-ONTO", "name": "Unoffical NeIC Organisation Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5632, "download_url": "media/ontologies/NEIC-ONTO/5/neic-onto.skos", "submission_id": 5, "domain": null, "description": "Terms used to describe different aspects of NeIC activities", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-01-24T00:00:00", "date_created": "2023-01-25T11:28:31", "home_page": null, "version": "0.2.2", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 22, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ATOL", "name": "Animal Trait Ontology for Livestock", "status": "Classified", "topics": null, "species": null, "submission": { "id": 660, "download_url": "media/ontologies/ATOL/1/atol.owl", "submission_id": 1, "domain": null, "description": "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL).\r\nATOL aims to:\r\n- provide a reference ontology of phenotypic traits of farm animals for the international scientific and educational - communities, farmers, etc.;\r\n- deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling;\r\n- represent traits as generic as possible for livestock vertebrates;\r\n- make the ATOL ontology as operational as possible and closely related to measurement techniques;\r\n- structure the ontology in relation to animal production\r\n\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-10-22T00:00:00", "date_created": "2014-10-22T08:53:10", "home_page": "www.atol-ontology.com", "version": null, "has_ontology_language": "OWL", "nb_classes": 2098, "nb_individuals": 0, "nb_properties": 0, "max_depth": 11, "max_children": 35, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ENVS_VARIABLES", "name": "ENVS variables", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4576, "download_url": "media/ontologies/ENVS_VARIABLES/2/envs_variables.skos", "submission_id": 2, "domain": null, "description": "Quantitative and qualitative variables describing environmental state", "documentation": "https://github.com/m4m-dk/workshop-2-vocabulary", "publication": "https://github.com/m4m-dk/workshop-2-vocabulary", "publications": null, "products": null, "taxon": null, "date_released": "2021-09-28T01:03:42", "date_created": "2021-09-28T01:03:43", "home_page": "https://github.com/m4m-dk/workshop-2-vocabulary", "version": "0.1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 12, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ENVTHES", "name": "Thesaurus for long-term ecological research, monitoring, experiments", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7733, "download_url": "media/ontologies/ENVTHES/54/envthes.skos", "submission_id": 54, "domain": null, "description": "EnvThes, EnvThes compiles a set of terms in order to describe in a harmonised way data resulting from observations and measurements of ecosystem processes across different domain specific sciences. It is used by DEIMS-SDR for common keywords for annotation and quering metadata purposes.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-07T02:04:22", "date_created": "2025-11-06T00:00:00", "home_page": null, "version": "5.0.16", "has_ontology_language": "SKOS", "nb_classes": 12, "nb_individuals": 5673, "nb_properties": 11, "max_depth": 1, "max_children": 7, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EP", "name": "Cardiac Electrophysiology Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 560, "download_url": "media/ontologies/EP/2/ep.owl", "submission_id": 2, "domain": null, "description": "The Cardiac Electrophysiology Ontology contains terms describing single-channel electrophysiological experiments and data obtained using voltage-clamp, current clamp and fluorescence imaging techniques applied at the cell level and multi-channel fluorescence imaging techniques applied at the cell, tissue and whole heart levels.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2008-12-10T08:00:00", "date_created": "2009-04-28T02:50:51", "home_page": "http://www.cvrgrid.org", "version": "1", "has_ontology_language": "OWL", "nb_classes": 232, "nb_individuals": 1, "nb_properties": 9, "max_depth": 6, "max_children": 25, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EO", "name": "Ethnicity Ontoloy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 589, "download_url": "media/ontologies/EO/1/eo.owl", "submission_id": 1, "domain": null, "description": "The Ethnicity Ontology (EO) has been developed by extending the Basic Formal Ontology 2 standard in order to have a common reference for ethnicity concepts for semantic integration of datasets. It attempts to utilise iterated proxy markers for ethnicity such language spoken and interpreter requirements in order to support health care research studies.", "documentation": "www.ClinInf.eu", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-10-12T00:00:00", "date_created": "2015-10-12T16:40:46", "home_page": "www.ClinInf.eu", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 768, "nb_individuals": 0, "nb_properties": 0, "max_depth": 9, "max_children": 67, "avg_children": 9, "classifiable": true, "nb_inconsistent": 1, "indexed": true, "md5sum": null } }, { "acronym": "EO1", "name": "Example Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4718, "download_url": "media/ontologies/EO1/1/eo1.skos", "submission_id": 1, "domain": null, "description": "Ontology with some information about patient's origin and disabilities", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-11-17T00:00:00", "date_created": "2021-11-17T14:48:07", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 25, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EOL", "name": "Environment Ontology for Livestock", "status": "Classified", "topics": null, "species": null, "submission": { "id": 284, "download_url": "media/ontologies/EOL/1/eol.owl", "submission_id": 1, "domain": null, "description": "L'ontologie EOL décrit les conditions d'environnement des élevages d'animaux domestiques. Elle décrit plus particulièrement les modalités de l'alimentation, de l'environnement, de la structure des élevages et des systèmes d'élevage", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-10-22T00:00:00", "date_created": "2014-10-22T15:02:40", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 648, "nb_individuals": 0, "nb_properties": 1, "max_depth": 10, "max_children": 25, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEO", "name": "Neurologic Examination Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5454, "download_url": "media/ontologies/NEO/90/neo.owl", "submission_id": 90, "domain": null, "description": "An ontology to capture findings from the neurological examination. The ontology is based on concepts from UMLS Metathesaurus and SNOMED CT. Only abnormal findings are included. The purpose of the ontology is to act as a limited vocabulary for coding the neurological examination for big data projects or machine learning.\r\n\r\nHier DB, Brint SU. A Neuro-ontology for the neurological examination. BMC Med Inform Decis Mak. 2020;20(1):47. Published 2020 Mar 4. doi:10.1186/s12911-020-1066-7", "documentation": null, "publication": "https://doi.org/10.1186/s12911-020-1066-7", "publications": null, "products": null, "taxon": null, "date_released": "2022-07-05T00:00:00", "date_created": "2022-10-25T16:31:54", "home_page": "https://doi.org/10.1186/s12911-020-1066-7", "version": "49.0", "has_ontology_language": "OWL", "nb_classes": 1610, "nb_individuals": 4, "nb_properties": 1, "max_depth": 12, "max_children": 31, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEOMARK3", "name": "Neomark Oral Cancer Ontology, version 3", "status": "Classified", "topics": null, "species": null, "submission": { "id": 451, "download_url": "media/ontologies/NEOMARK3/2/neomark3.owl", "submission_id": 2, "domain": null, "description": "Ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-17T07:00:00", "date_created": "2010-05-21T10:35:05", "home_page": "http://www.neomark.eu/portal/", "version": "3.1", "has_ontology_language": "OWL", "nb_classes": 55, "nb_individuals": 0, "nb_properties": 593, "max_depth": 2, "max_children": 41, "avg_children": 7, "classifiable": true, "nb_inconsistent": 1, "indexed": true, "md5sum": null } }, { "acronym": "NEOMARK4", "name": "Neomark Oral Cancer Ontology, version 4", "status": "Classified", "topics": null, "species": null, "submission": { "id": 525, "download_url": "media/ontologies/NEOMARK4/1/neomark4.owl", "submission_id": 1, "domain": null, "description": "Ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.", "documentation": "http://www.neomark.eu", "publication": "http://www.neomark.eu/portal/index.php?option=com_content&view=article&id=86&Itemid=96", "publications": null, "products": null, "taxon": null, "date_released": "2011-03-24T07:00:00", "date_created": "2011-11-11T10:19:57", "home_page": "http://www.neomark.eu", "version": "4.1", "has_ontology_language": "OWL", "nb_classes": 325, "nb_individuals": 0, "nb_properties": 27, "max_depth": 10, "max_children": 19, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NERO", "name": "Named Entity Recognition Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4453, "download_url": "media/ontologies/NERO/1/nero.owl", "submission_id": 1, "domain": null, "description": "Named Entity Recognition Ontology (NERO) developed specifically for describing textual entities in biomedical texts, which accounts for diverse levels of ambiguity, bridging the scientific sublanguages of molecular biology, genetics, biochemistry, and medicine. The annotation of natural science texts is more challenging than in other domains. Biomedical language is replete with ambiguity distinct from that observed in news articles or informal text online. In biomedical texts, alternative meanings are not always clearly separated.\r\n\r\nFor example, in some biomedical contexts, the words for a named entity may refer to a gene or a protein with nearly equal probability; for example, “a mutant hemoglobin α_2” can refer to either a gene or a protein. If the author meant gene-or-protein A, and we force an annotator to choose either interpretation gene A or protein A, the resulting annotation is of limited utility because the choice between gene and protein is random if the meanings are equally likely based on context. NERO attempts to minimize unwarranted, arbitrary annotative semantic label assignments for textual entities. \r\n\r\nNERO defines ambiguous concepts, such as GeneOrProtein, which subsumes both Gene and Protein using the following axiom: EquivalentTo: ‘Gene’ or ‘Protein.’ There are no biological entities that are either a gene or a protein, but there are lexical entities that can correspond to either or both of these entities.\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-28T00:00:00", "date_created": "2021-04-28T17:37:55", "home_page": null, "version": "The main developer of NERO is Prof. Robert Stevens, the University of Manchester", "has_ontology_language": "OWL", "nb_classes": 63, "nb_individuals": 0, "nb_properties": 27, "max_depth": 6, "max_children": 21, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EPIE", "name": "Epigenetic Entity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3302, "download_url": "media/ontologies/EPIE/4/epie.owl", "submission_id": 4, "domain": null, "description": "Biological entities associated with changes in the regulation of gene activity without alteration of genetic structure. Development of this terminology was funded by the National Institute of Child Health and Human Development in support of the Placental Atlas Tool (PAT) with final verification by the PAT External Scientific Panel. This terminology was developed through a combination of resources including existing biomedical ontology resources, such as the Gene Ontology and the National Cancer Institute Thesaurus, web-based content, and epigenetic literature.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-05-01T00:00:00", "date_created": "2020-01-27T19:02:07", "home_page": null, "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 392, "nb_individuals": 0, "nb_properties": 0, "max_depth": 8, "max_children": 23, "avg_children": 13, "classifiable": true, "nb_inconsistent": 17, "indexed": true, "md5sum": null } }, { "acronym": "EPILONT", "name": "Epilepsy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 86, "download_url": "media/ontologies/EPILONT/2/epilont.owl", "submission_id": 2, "domain": null, "description": "Ontology about the epilepsy domain and epileptic seizures. Based on the diagnosis proposed by the International League Against Epilepsy (ILAE).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-07-18T07:00:00", "date_created": "2011-07-18T16:54:20", "home_page": "www.epilepsiae.eu", "version": "V1", "has_ontology_language": "OWL", "nb_classes": 138, "nb_individuals": 0, "nb_properties": 10, "max_depth": 4, "max_children": 28, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "EPIO", "name": "Epilepsy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5581, "download_url": "media/ontologies/EPIO/3/epio.owl", "submission_id": 3, "domain": "health", "description": "A application driven Epilepsy Ontology with official terms from the ILAE.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "epio.owl", "ontology_purl": "http://purl.obolibrary.org/obo/epio.owl" }, { "id": "EPIO_merged.owl", "ontology_purl": "http://purl.obolibrary.org/obo/EPIO_merged.owl" } ], "taxon": null, "date_released": "2022-12-26T12:19:57.770900", "date_created": "2022-12-26T12:19:57.770929", "home_page": "https://github.com/SCAI-BIO/EpilepsyOntology", "version": null, "has_ontology_language": "OWL", "nb_classes": 1916, "nb_individuals": 1, "nb_properties": 12, "max_depth": 16, "max_children": 41, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "34876cf99fbb5d7a831ddc86f0d0d93e" } }, { "acronym": "FALDO", "name": "Feature Annotation Location Description Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 783, "download_url": "media/ontologies/FALDO/1/faldo.owl", "submission_id": 1, "domain": null, "description": "FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources.\r\n\r\nThe aim of this ontology is to describe the position of a sequence region or a feature. It does not aim to describe features or regions itself, but instead depends on resources such as the Sequence Ontology or the UniProt core ontolgy.", "documentation": "https://github.com/OBF/FALDO", "publication": "https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0067-z", "publications": null, "products": null, "taxon": null, "date_released": "2015-06-20T00:00:00", "date_created": "2017-11-03T15:46:37", "home_page": "http://biohackathon.org/resource/faldo", "version": "Created at the Biohackathon 2012 and 2013", "has_ontology_language": "OWL", "nb_classes": 19, "nb_individuals": 0, "nb_properties": 10, "max_depth": 2, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FAO", "name": "Fungal gross anatomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7485, "download_url": "media/ontologies/FAO/29/fao.owl", "submission_id": 29, "domain": "anatomy and development", "description": "A structured controlled vocabulary for the anatomy of fungi.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "fao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fao.owl" }, { "id": "fao.obo", "ontology_purl": "http://purl.obolibrary.org/obo/fao.obo" } ], "taxon": { "id": "NCBITaxon:4751", "label": "Fungal" }, "date_released": "2025-07-21T12:08:56.299910", "date_created": "2025-07-21T12:08:56.299916", "home_page": "https://github.com/obophenotype/fungal-anatomy-ontology/", "version": null, "has_ontology_language": "OWL", "nb_classes": 121, "nb_individuals": 0, "nb_properties": 3, "max_depth": 9, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "49d5f190e3f706596c3c5cb011be021e" } }, { "acronym": "TM-OTHER-FACTORS", "name": "Traditional Medicine Other Factors Value Set", "status": "Classified", "topics": null, "species": null, "submission": { "id": 88, "download_url": "media/ontologies/TM-OTHER-FACTORS/1/tm-other-factors.owl", "submission_id": 1, "domain": null, "description": "The value set for the Other Factors property of the International Classification of Traditional Medicine (ICTM).", "documentation": "https://sites.google.com/site/whoictm/home", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-01-31T08:00:00", "date_created": "2011-02-01T02:28:17", "home_page": "https://sites.google.com/site/whoictm/home", "version": "1", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 12, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TM-SIGNS-AND-SYMPTS", "name": "Traditional Medicine Signs and Symptoms Value Set", "status": "Classified", "topics": null, "species": null, "submission": { "id": 109, "download_url": "media/ontologies/TM-SIGNS-AND-SYMPTS/1/tm-signs-and-sympts.owl", "submission_id": 1, "domain": null, "description": "The value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM).", "documentation": "https://sites.google.com/site/whoictm/home", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-01-31T08:00:00", "date_created": "2011-02-01T02:31:04", "home_page": "https://sites.google.com/site/whoictm/home", "version": "1", "has_ontology_language": "OWL", "nb_classes": 325, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 325, "avg_children": 325, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TO", "name": "Plant Trait Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7889, "download_url": "media/ontologies/TO/14/to.owl", "submission_id": 14, "domain": "phenotype", "description": "A controlled vocabulary to describe phenotypic traits in plants.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578", "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." } ], "products": [ { "id": "to.owl", "ontology_purl": "http://purl.obolibrary.org/obo/to.owl" }, { "id": "to.obo", "ontology_purl": "http://purl.obolibrary.org/obo/to.obo" } ], "taxon": { "id": "NCBITaxon:33090", "label": "Viridiplantae" }, "date_released": "2026-01-19T20:19:45.326275", "date_created": "2026-01-19T20:19:45.326278", "home_page": "http://browser.planteome.org/amigo", "version": null, "has_ontology_language": "OWL", "nb_classes": 5050, "nb_individuals": 9, "nb_properties": 151, "max_depth": 29, "max_children": 483, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7434b9c3b7bc73c701b4babae46f788d" } }, { "acronym": "NND_ND", "name": "NND_Neuropathological_Diagnosis", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6347, "download_url": "media/ontologies/NND_ND/2/nnd_nd.owl", "submission_id": 2, "domain": null, "description": "Netherlands Neurogenetics Database Neuropathological Diagnosis ontology. This ontology describes the most common neurodegenerative and psychiatric disorders in the Netherlands Brain Bank and can be used for cross-disorder brain research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-08-07T00:00:00", "date_created": "2024-01-18T13:56:06", "home_page": null, "version": "2023-03-31", "has_ontology_language": "OWL", "nb_classes": 111, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 16, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NOMEN", "name": "NOMEN - A nomenclatural ontology for biological names", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7666, "download_url": "media/ontologies/NOMEN/11/nomen.owl", "submission_id": 11, "domain": "information", "description": "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "nomen.owl", "type": "owl:Ontology", "title": "NOMEN", "description": "core ontology", "is_canonical": true, "ontology_purl": "http://purl.obolibrary.org/obo/nomen.owl" } ], "taxon": null, "date_released": "2025-10-20T13:23:51.434459", "date_created": "2025-10-20T13:23:51.434462", "home_page": "https://github.com/SpeciesFileGroup/nomen", "version": null, "has_ontology_language": "OWL", "nb_classes": 264, "nb_individuals": 0, "nb_properties": 114, "max_depth": 8, "max_children": 22, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "8c9c61f19eb2c477dced3c14e1639404" } }, { "acronym": "NIDM-RESULTS", "name": "NIDM-Results", "status": "Classified", "topics": null, "species": null, "submission": { "id": 442, "download_url": "media/ontologies/NIDM-RESULTS/2/nidm-results.owl", "submission_id": 2, "domain": null, "description": "NIDM-Results is a data model that enable sharing neuroimaging results using a common descriptive standard across neuroimaging software. NIDM-Results focuses on mass-univariate studies and is mostly targeted at fMRI but is also suitable for anatomical MRI (with Voxel-Based Morphometry), and Positron Emission Tomography (PET). \r\n\r\nNIDM-Results packs provide a lightweight solution to share maps generated by neuroimaging studies along with their metadata. Export to NIDM-Results is natively implemented in SPM, NeuroVault and CBRAIN and a Python library is ready for integration in FSL. NeuroVault additionally can import NIDM-Results packs.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-07T00:00:00", "date_created": "2016-06-07T11:31:38", "home_page": "http://nidm.nidash.org/specs/nidm-results.html", "version": "Recommendation version 2013-04-30", "has_ontology_language": "OWL", "nb_classes": 161, "nb_individuals": 38, "nb_properties": 149, "max_depth": 4, "max_children": 36, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIGO", "name": "Neural-Immune Gene Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 526, "download_url": "media/ontologies/NIGO/2/nigo.obo", "submission_id": 2, "domain": null, "description": "The Neural-Immune Gene Ontology (NIGO) is a subset of GO directed for neurological and immunological systems. NIGO was created by clipping those GO terms that are not associated to any gene in human, rat and mouse, and by clipping terms not found to be relevant to the neural and/or immune domains.", "documentation": "http://bioinfo.bgu.ac.il/rubin/supplementary/NIGO/Supplementary.html", "publication": "http://www.biomedcentral.com/1471-2105/11/458", "publications": null, "products": null, "taxon": null, "date_released": "2010-09-12T07:00:00", "date_created": "2010-10-29T00:24:54", "home_page": null, "version": "v1", "has_ontology_language": "OBO", "nb_classes": 4842, "nb_individuals": 0, "nb_properties": 4, "max_depth": 13, "max_children": 191, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIHSS", "name": "National Institutes of Health Stroke Scale Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 183, "download_url": "media/ontologies/NIHSS/11/nihss.owl", "submission_id": 11, "domain": null, "description": "Domain ontology for National Institutes of Health Stroke Scale (NIHSS). Scores range from 0-42. Patients are given more points for greater deficiencies. A score of 0 indicates that the test is normal.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-09-27T01:09:01", "date_created": "2016-09-27T01:09:01", "home_page": null, "version": "2016/09", "has_ontology_language": "OWL", "nb_classes": 18, "nb_individuals": 106, "nb_properties": 22, "max_depth": 1, "max_children": 15, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOLURGENCES", "name": "Emergency care ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 569, "download_url": "media/ontologies/ONTOLURGENCES/1/ontolurgences.owl", "submission_id": 1, "domain": null, "description": "Emergency care ontology build during LERUDI project.\r\nhttp://www.ncbi.nlm.nih.gov/pubmed/25160343 (v4.0)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-10-27T00:00:00", "date_created": "2015-10-27T17:32:00", "home_page": null, "version": "3.0.4", "has_ontology_language": "OWL", "nb_classes": 10031, "nb_individuals": 0, "nb_properties": 61, "max_depth": 16, "max_children": 115, "avg_children": 4, "classifiable": true, "nb_inconsistent": 16, "indexed": true, "md5sum": null } }, { "acronym": "ONTOMA", "name": "Ontology of Alternative Medicine, French", "status": "Classified", "topics": null, "species": null, "submission": { "id": 469, "download_url": "media/ontologies/ONTOMA/1/ontoma.owl", "submission_id": 1, "domain": null, "description": "Common concepts for communication between traditional medicine and western medicine.\r\n\r\n(In French)", "documentation": "www.lavima.org/ontoma_1_1.html", "publication": "www.lavima.org/ontoma_1_1.html", "publications": null, "products": null, "taxon": null, "date_released": "2012-08-12T07:00:00", "date_created": "2012-06-25T14:31:44", "home_page": "www.lavima.org", "version": "Version 1.1\nDate: 11-2011\n", "has_ontology_language": "OWL", "nb_classes": 436, "nb_individuals": 27, "nb_properties": 0, "max_depth": 6, "max_children": 66, "avg_children": 4, "classifiable": true, "nb_inconsistent": 13, "indexed": true, "md5sum": null } }, { "acronym": "NIO", "name": "Neuropsychological Integrative Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4152, "download_url": "media/ontologies/NIO/2/nio.owl", "submission_id": 2, "domain": null, "description": "An integrative ontology of the four main domains of neuropsychological diseases, brain areas, cognitive functions and neuropsychological tests", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-03-24T00:00:00", "date_created": "2020-12-23T13:16:47", "home_page": null, "version": "1.1.1", "has_ontology_language": "OWL", "nb_classes": 3303, "nb_individuals": 917, "nb_properties": 168, "max_depth": 20, "max_children": 150, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIST_GEL", "name": "NIST Genome Editing Lexicon", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4822, "download_url": "media/ontologies/NIST_GEL/7/nist_gel.owl", "submission_id": 7, "domain": null, "description": "Genome editing technology is a fast-growing and rapidly advancing global bioscience field with applications in many biotechnology sectors. Genome editing is used to modify the nucleic acids of a genetic code, which can be composed of DNA or RNA, in a site-specific manner. Modifications can include insertion, deletion or alteration of nucleic acids. The technology operates by biochemical principles generally applicable to every kind of cell. Examples of genome editing technology applications with global significance include human cell-based therapeutics, agriculture, microbial based therapeutics, synthetic biology and biomanufacturing. While genome editing technology is being actively utilized, there is a need for international standardization in terms and definitions for this field, so as to enhance interpretation and communication of concepts, data and results. This document has been developed to provide a unified standard set of terms and definitions that serve the needs of biotechnology stakeholders and act as a reference for genome editing technology.", "documentation": "https://www.nist.gov/programs-projects/nist-genome-editing-lexicon", "publication": "https://www.iso.org/standard/80679.html?browse=tc", "publications": null, "products": null, "taxon": null, "date_released": "2020-11-23T00:00:00", "date_created": "2022-01-06T17:01:17", "home_page": "https://www.nist.gov/programs-projects/nist-genome-editing-lexicon", "version": "2.1", "has_ontology_language": "OWL", "nb_classes": 52, "nb_individuals": 0, "nb_properties": 9, "max_depth": 5, "max_children": 9, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTONEPHRO", "name": "Nephrology Ontology in order to index MOOC", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7578, "download_url": "media/ontologies/ONTONEPHRO/2/ontonephro.owl", "submission_id": 2, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-09-02T00:00:00", "date_created": "2025-09-02T00:00:00", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 7794, "nb_individuals": 6, "nb_properties": 217, "max_depth": 16, "max_children": 99, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOPNEUMO", "name": "Ontology of Pneumology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 440, "download_url": "media/ontologies/ONTOPNEUMO/1/ontopneumo.owl", "submission_id": 1, "domain": null, "description": "Ontology of pneumology (french version).\r\n\r\nThe ONTOPNEUMO ontology was developped by Audrey Baneyx, under the direction\r\nof Jean Charlet about knowledge engineering expertise and by François-Xavier\r\nBlanc in collaboration with Bruno Housset about medical expertise.\r\nThe OWL compliant ONTOPNEUMO ontology is available under Creative Commons\r\nlicense “Attribution-Non-Commercial-No Derivative Works 2.0 UK”. Details of\r\nthis license are accessible at : http://creativecommons.org/licenses/\r\nby-nc-nd/2.0/uk/.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-05-11T07:00:00", "date_created": "2012-12-04T11:09:05", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 1153, "nb_individuals": 0, "nb_properties": 22, "max_depth": 13, "max_children": 47, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOPSYCARE", "name": "Ontology developed during PsyCARE project", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7690, "download_url": "media/ontologies/ONTOPSYCARE/1/ontopsycare.owl", "submission_id": 1, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-10-22T00:00:00", "date_created": "2025-10-22T00:00:00", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 10208, "nb_individuals": 82, "nb_properties": 327, "max_depth": 12, "max_children": 1606, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTRISCAL", "name": "Ontology of Risk Stratification in Mental Health", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6297, "download_url": "media/ontologies/ONTRISCAL/1/ontriscal.owl", "submission_id": 1, "domain": null, "description": "This ontology organizes concepts and properties of risk stratification in mental health. Stratification aims to determine the patient's risk level by scoring signs and symptoms. Psychotherapeutic treatments aim to minimize patient risk by producing qualitative data reported in therapeutic sessions. Thus, the ONTRISCAL is applied in projects that organize the knowledge about quali-quanti data produced by risk stratification and mental health treatments. Quali-quanti data, semantically annotated by ONTRISCAL, can be ingested into knowledge graphs. Domain specialists can use knowledge graphs to navigate the ONTRISCAL concepts, analyze psychotherapeutic treatments, and control risks in mental health. This is a non-profit and open-source project.", "documentation": "https://github.com/evaldo/homoginise/tree/master/Ontologia", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-12-27T00:00:00", "date_created": "2023-12-27T18:05:15", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 332, "nb_individuals": 82, "nb_properties": 37, "max_depth": 6, "max_children": 58, "avg_children": 5, "classifiable": true, "nb_inconsistent": 5, "indexed": true, "md5sum": null } }, { "acronym": "ONVOC", "name": "OpenNeuro Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7680, "download_url": "media/ontologies/ONVOC/9/onvoc.skos", "submission_id": 9, "domain": null, "description": "A controlled vocabulary for OpenNeuro.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-10-17T00:00:00", "date_created": "2025-10-17T00:00:00", "home_page": null, "version": "1.0.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 753, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OPTIMAL", "name": "OPTImAL: An ontology for patient adherence modeling in physical activity domain", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2418, "download_url": "media/ontologies/OPTIMAL/1/optimal.owl", "submission_id": 1, "domain": null, "description": "OPTImAL is a reusable formal model of factors affecting CVD patient adherence to physical activity and exercise. The basis for this model relies on the analysis of data/evidence published in the scientific literature and enables identification of adherence based on the patient profile. In the model, the patient profile is seen from the perspective of 60 multidimensional aspects (320 factors). Each factor is associated with defined adherence to a particular patient activity behavior.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-03-28T00:00:00", "date_created": "2019-03-28T21:51:43", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 142, "nb_individuals": 371, "nb_properties": 10, "max_depth": 5, "max_children": 20, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORCS", "name": "Ontology for Representing CDM Semantics", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4719, "download_url": "media/ontologies/ORCS/1/orcs.owl", "submission_id": 1, "domain": null, "description": "The Ontology for Representing CDM Semantics (ORCS) is an application ontology that was developed to represent the semantics underlying the National Patient-Centered Outcomes Research Network's (PCORnet) Common Data Model (CDM). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-11-18T00:00:00", "date_created": "2021-11-18T17:47:11", "home_page": "https://github.com/ufbmi/ORCS", "version": "2021-11-13", "has_ontology_language": "OWL", "nb_classes": 861, "nb_individuals": 68, "nb_properties": 424, "max_depth": 13, "max_children": 53, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIAID-GSC-BRC", "name": "NIAID GSC and BRC View", "status": "Classified", "topics": null, "species": null, "submission": { "id": 105, "download_url": "media/ontologies/NIAID-GSC-BRC/3/niaid-gsc-brc.owl", "submission_id": 3, "domain": null, "description": "It is a subset of OBI containing all terms representing NIAID GSCID and BRC Core Metadata. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-05-13T00:00:00", "date_created": "2015-05-13T18:51:19", "home_page": null, "version": "2015-04-13", "has_ontology_language": "OWL", "nb_classes": 198, "nb_individuals": 12, "nb_properties": 35, "max_depth": 15, "max_children": 12, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NMDCO", "name": "NMDC Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6469, "download_url": "media/ontologies/NMDCO/8/nmdco.owl", "submission_id": 8, "domain": null, "description": "The NMDC Ontology (NMDCO) is used by the National Microbiome Data Collaborative (NMDC, https://microbiomedata.org) to annotate multi-omic microbiome metadata. It merges a number of ontologies relevant to the NMDC (such as the plant and environment ontologies) into a single ontology.\r\nThe ontology can be download from Github at https://github.com/microbiomedata/nmdc-ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-03-16T01:10:27", "date_created": "2024-03-16T01:10:42", "home_page": "https://github.com/microbiomedata/nmdc-ontology", "version": "2024-03-15", "has_ontology_language": "OWL", "nb_classes": 13683, "nb_individuals": 83, "nb_properties": 709, "max_depth": 38, "max_children": 115, "avg_children": 2, "classifiable": true, "nb_inconsistent": 2, "indexed": true, "md5sum": null } }, { "acronym": "NMR", "name": "NMR-Controlled Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3116, "download_url": "media/ontologies/NMR/12/nmr.owl", "submission_id": 12, "domain": null, "description": "This is the new msi-sanctioned nmr CV, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with meaningful raw data descriptors.", "documentation": "http://www.cosmos-fp7.eu/system/files/presentation/COSMOS%20DELIVERABLE%202.4_0.pdf", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-11-13T02:13:41", "date_created": "2019-11-13T02:13:44", "home_page": "http://nmrml.org/cv/", "version": "1.1.0", "has_ontology_language": "OWL", "nb_classes": 788, "nb_individuals": 0, "nb_properties": 0, "max_depth": 9, "max_children": 28, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NND_CD", "name": "NND_Clinical_Diagnosis", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6348, "download_url": "media/ontologies/NND_CD/2/nnd_cd.owl", "submission_id": 2, "domain": null, "description": "This view represents a subset of the Human Disease Ontology (DOID) containing all the clinical diagnoses that are relevant for the most common neurodegenerative and psychiatric disorders in the Netherlands Brain Bank.\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-08-07T00:00:00", "date_created": "2024-01-18T13:54:45", "home_page": null, "version": "2023-03-31", "has_ontology_language": "OWL", "nb_classes": 11242, "nb_individuals": 0, "nb_properties": 3, "max_depth": 13, "max_children": 1396, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NND_CH", "name": "NND_Clinical_history", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6349, "download_url": "media/ontologies/NND_CH/2/nnd_ch.obo", "submission_id": 2, "domain": null, "description": "Netherlands Neurogenetics Database Clinical History ontology. This ontology describes clinical signs, symptoms and findings from the most common neurodegenerative and psychiatric disorders in the Netherlands Brain Bank and can be used for cross-disorder brain research. These attributes encompass 19 groupings, including ‘Disturbances in mood and behavior’, ‘Extrapyramidal signs’, ‘Cognitive and memory impairment’ in 5 broad domains: Psychiatric, Cognitive, Motor, Sensory/autonomic, and General.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-08-07T00:00:00", "date_created": "2024-01-18T13:56:19", "home_page": null, "version": "1", "has_ontology_language": "OBO", "nb_classes": 114, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SMASH", "name": "SMASH Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 436, "download_url": "media/ontologies/SMASH/6/smash.owl", "submission_id": 6, "domain": null, "description": "The SMASH (Semantic Mining of Activity, Social, and Health data) system ontology describes concepts used in describing the semantic features of healthcare data and social networks. The SMASH system primarily addresses the research topic of sustained weight loss with continued intervention with frequent social contacts.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-03T01:14:47", "date_created": "2015-06-03T01:14:47", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 189, "nb_individuals": 87, "nb_properties": 144, "max_depth": 7, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 2, "indexed": true, "md5sum": null } }, { "acronym": "NPHO", "name": "Nightshade Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 152, "download_url": "media/ontologies/NPHO/1/npho.owl", "submission_id": 1, "domain": null, "description": "first draft", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-09-12T00:00:00", "date_created": "2014-09-12T13:15:21", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 6201, "nb_individuals": 0, "nb_properties": 35, "max_depth": 10, "max_children": 870, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTONEO", "name": "Obstetric and Neonatal Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 4442, "download_url": "media/ontologies/ONTONEO/12/ontoneo.owl", "submission_id": 12, "domain": "biomedical, health", "description": "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ontoneo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ontoneo.owl" } ], "taxon": null, "date_released": "2021-05-03T12:40:10.611907", "date_created": "2021-05-03T12:40:10.611929", "home_page": "ontoneo.com", "version": null, "has_ontology_language": "OWL", "nb_classes": 1797, "nb_individuals": 17, "nb_properties": 444, "max_depth": 14, "max_children": 27, "avg_children": 14, "classifiable": true, "nb_inconsistent": 21, "indexed": true, "md5sum": "15a05f1634bb71e3aca21ca53750ea21" } }, { "acronym": "NPI", "name": "Non-Pharmacological Interventions (NPIs)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 527, "download_url": "media/ontologies/NPI/4/npi.owl", "submission_id": 4, "domain": null, "description": "Terminologies of Non-Pharmacological Interventions", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-07-15T00:00:00", "date_created": "2016-11-13T09:01:30", "home_page": "http://www.cepsplatform.eu", "version": "Version 2.0", "has_ontology_language": "OWL", "nb_classes": 128, "nb_individuals": 5, "nb_properties": 5, "max_depth": 4, "max_children": 25, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBOREL", "name": "Relations Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 873, "download_url": "media/ontologies/OBOREL/10/oborel.owl", "submission_id": 10, "domain": null, "description": "A collection of relations intended primarily for standardization across ontologies in the OBO Foundry and wider OBO library. It incorporates ROCore upper-level relations such as part of as well as biology-specific relationship types such as develops from.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-02T00:00:00", "date_created": "2017-11-28T16:18:50", "home_page": "https://github.com/oborel/obo-relations/", "version": null, "has_ontology_language": "OWL", "nb_classes": 79, "nb_individuals": 5, "nb_properties": 528, "max_depth": 10, "max_children": 7, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONL-MR-DA", "name": "Magnetic Resonance Dataset Acquisition Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 461, "download_url": "media/ontologies/ONL-MR-DA/1/onl-mr-da.owl", "submission_id": 1, "domain": null, "description": "This ontology is a module of the OntoNeuroLOG ontology, developed in the context of the NeuroLOG project, a french project supported by ANR (ANR-06-TLOG-024 grant) aiming at integrating distributed heterogeneous resources in neuroimaging.\r\nIf covers the domain of Magnetic Resonance Imaging (MRI) dataset acquisition, i.e. MRI protocols, and MRI sequence parameters. In particular, it includes a multi-axial classification of MR sequences.", "documentation": "http://neurolog.unice.fr/ontoneurolog/v3.0/OntoSpec-documentation.zip", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-10T07:00:00", "date_created": "2013-07-10T05:53:55", "home_page": "http://neurolog.unice.fr/ontoneurolog/v3.0/Documentation_OntoNeuroLOGv3.pdf", "version": "V1", "has_ontology_language": "OWL", "nb_classes": 702, "nb_individuals": 42, "nb_properties": 244, "max_depth": 13, "max_children": 38, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONL-MSA", "name": "Mental State Assessment", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 730, "download_url": "media/ontologies/ONL-MSA/1/onl-msa.owl", "submission_id": 1, "domain": null, "description": "This ontology is a module of the OntoNeuroLOG ontology, developed in the context of the NeuroLOG project, a french project supported by ANR (ANR-06-TLOG-024 grant) aiming at integrating distributed heterogeous resources in neuroimaging.\r\nThis MSA ontology module covers the field of mental state assessments, i.e. instruments, instrument variables, assessments, and resulting scores. It includes a generic domain core ontology, that provides a general model of such entities and a general taxonomy of behavioural, neurosychological and neuroclinical instruments, that can be easily extended to model any particular kind of instrument. It also includes such extensions for 8 relatively standard instruments, namely: (1) the Beck-depression-inventory-(BDI-II), (2) the Expanded-Disability-Status-Scale, (3) the Controlled-oral-word-association-test, (4) the Free-and-Cued-Selective-Reminding-Test-with-Immediate-Recall-16-item-version-(The-Gröber-and-Buschke-test), (5) the Mini-Mental-State, (6) the Stroop-color-and-word-test, (7) the Trail-making-test-(TMT), (8) the Wechsler-Adult-Intelligence-Scale-third-edition, (9) the Clinical-Dementia-Rating-scale, (10) the Category-verbal-fluency, (11) the Rey-Osterrieth-Complex-Figure-Test-(CFT).\r\n", "documentation": "http://neurolog.unice.fr/ontoneurolog/v3.0/OntoSpec-documentation.zip", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-09T07:00:00", "date_created": "2013-07-09T15:22:06", "home_page": "http://neurolog.unice.fr/ontoneurolog/v3.0/Documentation_OntoNeuroLOGv3.pdf", "version": "v1", "has_ontology_language": "OWL", "nb_classes": 769, "nb_individuals": 581, "nb_properties": 249, "max_depth": 10, "max_children": 119, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ordo", "name": "Orphanet Rare Disease Ontology", "status": "Classified", "topics": [ "rare disease" ], "species": [ "Human" ], "submission": { "id": 2197, "download_url": "media/ontologies/ordo/1/ordo.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-01-25T18:57:56.313542", "date_created": "2019-01-25T18:57:56.313507", "home_page": "https://www.ebi.ac.uk/ols/ontologies/ordo", "version": "2.7", "has_ontology_language": "OWL", "nb_classes": 14062, "nb_individuals": 0, "nb_properties": 18, "max_depth": 11, "max_children": 3864, "avg_children": 14, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DSIPFL7", "name": "DSIP_Fieldlab_7", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6175, "download_url": "media/ontologies/DSIPFL7/12/dsipfl7.skos", "submission_id": 12, "domain": null, "description": "The Human Trafficking Vocabulary is an essential resource for researchers and analysts working with raw interview data gathered from refugees affected by human trafficking. It offers a standardized framework for categorizing and understanding various aspects of human trafficking incidents. The vocabulary includes terms for describing the nationality and location of human traffickers, the number of times traffickers are mentioned by independent sources, the type of observation obtained (first-hand or second-hand), and more. This vocabulary was created as part of Data Science in Practice Fieldlab-7, with guidance from Kai Smiths. It is continuously updated to reflect new insights and developments in the field of human trafficking research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-03T00:00:00", "date_created": "2023-11-03T15:18:46", "home_page": null, "version": "latest", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 24, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBI_BCGO", "name": "Beta Cell Genomics Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 679, "download_url": "media/ontologies/OBI_BCGO/14/obi_bcgo.owl", "submission_id": 14, "domain": null, "description": "Beta Cell Genomics Ontology (BCGO) is an application ontology built for the Beta Cell Genomics database (http://genomics.betacell.org/gbco/) aiming to support database annotation, complicated semantic queries, and automated cell type classification. The ontology is developed using Basic Formal Ontology (BFO) as upper ontology, Ontology for Biomedical Investigations (OBI) as ontology framework and integrated subsets of multiple OBO Foundry (candidate) ontologies. Current the BCGO contains 2383 classes including terms referencing to 24 various OBO Foundry ontologies including CL, CLO, UBERON, GO, PRO, UO, etc.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-21T01:07:04", "date_created": "2015-08-21T01:07:04", "home_page": "https://github.com/obi-bcgo/bcgo", "version": "2015-07-08", "has_ontology_language": "OWL", "nb_classes": 2270, "nb_individuals": 46, "nb_properties": 107, "max_depth": 18, "max_children": 129, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "obi-device", "name": "OBI Device branch", "status": "Classified", "topics": null, "species": null, "submission": { "id": 647, "download_url": "media/ontologies/obi-device/1/obi-device.owl", "submission_id": 1, "domain": null, "description": "Subset of OBI that contains the term obi:device and all children terms.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-02-08T08:00:00", "date_created": "2011-02-09T06:02:25", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 427, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 57, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "obi-fged", "name": "FGED View", "status": "Classified", "topics": null, "species": null, "submission": { "id": 489, "download_url": "media/ontologies/obi-fged/11/obi-fged.owl", "submission_id": 11, "domain": null, "description": "Subset of OBI terms of interest to the Functional Genomics Data (FGED) Society", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-12-22T02:09:50", "date_created": "2016-12-22T02:09:51", "home_page": null, "version": "2013-10-25", "has_ontology_language": "OWL", "nb_classes": 1275, "nb_individuals": 118, "nb_properties": 50, "max_depth": 16, "max_children": 56, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBI_IEE", "name": "The Ontology for Biomedical Investigation based Inner Ear Electrophysiology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2894, "download_url": "media/ontologies/OBI_IEE/1/obi_iee.owl", "submission_id": 1, "domain": null, "description": "Inner Ear Electrophysiology (IEE) is an application ontology created to describe electrophysiology and biophysical data collections of the anatomical entities and cells (e.g., outer hair cells) of the inner ear. The ontology is developed with The Ontology for Biomedical Investigations (OBI) and integrated subsets of multiple OBO ontologies, especially, PATO, FMA, CHEBI, and OBA.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-08-31T00:00:00", "date_created": "2019-08-31T21:05:54", "home_page": null, "version": "2018-05-23", "has_ontology_language": "OWL", "nb_classes": 3507, "nb_individuals": 300, "nb_properties": 94, "max_depth": 17, "max_children": 78, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBOE", "name": "The Extensible Observation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2937, "download_url": "media/ontologies/OBOE/4/oboe.owl", "submission_id": 4, "domain": null, "description": "The Extensible Observation Ontology (OBOE) is a formal ontology for capturing the semantics of scientific observation and measurement. The ontology supports researchers to add detailed semantic annotations to scientific data, thereby clarifying the inherent meaning of scientific observations. The main concepts in OBOE include:\r\n\r\n- Observation: an event in which one or more measurements are taken\r\n- Measurement: the measured value of a property for a specific object or phenomenon (e.g., 3.2)\r\n- Entity: an object or phenomenon on which measurements are made (e.g., Quercus rubrum)\r\n- Characteristic: the property being measured (e.g., VolumetricDensity)\r\n- Standard: units and controlled vocabularies for interpreting measured values (e.g., g/cm^3)\r\n- Protocol: the procedures followed to obtain measurements (e.g., DensityProtocol2014)\r\n\r\nOBOE can characterize the context of an observation (e.g., space and time), as well as dependencies such as nested experimental observations. It includes an extensive set of unit definitions (e.g., grams of carbon per liter of seawater), and can facilitate automatic unit conversions (e.g., pounds to kilograms). OBOE can be easily extended to create Entities and Characteristics for specific research domains, making it both broadly applicable and highly customizable.\r\n\r\nOBOE is being used to improve data interpretation, facilitate reuse, and create precise and effective systems for data search and discovery.", "documentation": "https://github.com/NCEAS/oboe", "publication": "Madin, J., S. Bowers, M. Schildhauer, S. Krivov, D. Pennington, and F. Villa. 2007. An ontology for describing and synthesizing ecological observation data. Ecological Informatics 2:279–296. doi:10.1016/j.ecoinf.2007.05.004", "publications": null, "products": null, "taxon": null, "date_released": "2019-09-17T00:00:00", "date_created": "2019-09-18T01:59:47", "home_page": "https://github.com/NCEAS/oboe", "version": "Version 1.2", "has_ontology_language": "OWL", "nb_classes": 292, "nb_individuals": 0, "nb_properties": 24, "max_depth": 4, "max_children": 70, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBS", "name": "OntoBioStat", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6226, "download_url": "media/ontologies/OBS/5/obs.owl", "submission_id": 5, "domain": null, "description": "Application ontology for covariate selection support. ", "documentation": null, "publication": "https://pubmed.ncbi.nlm.nih.gov/34042854/", "publications": null, "products": null, "taxon": null, "date_released": "2022-12-19T00:00:00", "date_created": "2023-11-21T12:39:37", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 57, "nb_individuals": 30, "nb_properties": 35, "max_depth": 7, "max_children": 12, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OCCO", "name": "Occupation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7632, "download_url": "media/ontologies/OCCO/9/occo.owl", "submission_id": 9, "domain": "information", "description": "An ontology representing occupations. It is designed to facilitate harmonization of existing occupation standards, such as the US Bureau of Labor Statistics Standard Occupational Classification (US SOC), the International Standard Classification of Occupations (ISCO), the UK National Statistics Standard Occupational Classification (UK SOC), and the European Skills, Competences, Qualifications and Occupations (ESCO) of the European Union.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "occo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/occo.owl" } ], "taxon": null, "date_released": "2025-10-06T13:07:43.823117", "date_created": "2025-10-06T13:07:43.823120", "home_page": "https://github.com/Occupation-Ontology/OccO", "version": null, "has_ontology_language": "OWL", "nb_classes": 1802, "nb_individuals": 20, "nb_properties": 33, "max_depth": 11, "max_children": 289, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "645bb1c8d6277fb624830232cda7f7e1" } }, { "acronym": "OCD", "name": "OCD ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6235, "download_url": "media/ontologies/OCD/8/ocd.owl", "submission_id": 8, "domain": null, "description": "The Obsessive Compulsive Disorder Ontology (OCD) is a domain-specific ontology for representing the knowledge of OCD.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-21T00:00:00", "date_created": "2023-12-04T11:14:20", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 2475, "nb_individuals": 3091, "nb_properties": 60, "max_depth": 15, "max_children": 145, "avg_children": 7, "classifiable": true, "nb_inconsistent": 9, "indexed": true, "md5sum": null } }, { "acronym": "OCE", "name": "Ontology of Chemical Elements", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3385, "download_url": "media/ontologies/OCE/2/oce.owl", "submission_id": 2, "domain": null, "description": "The Ontology of Chemical Elements (OCE) is a community-based ontology in the domain of chemical elements. OCE systematically represents and annotates the known 118 chemical elements and their charactistics and relations with other entities. OCE imports the basic chemical element information from ChEBI and adds more classes, annotations, and axioms. OCE specifically focuses on adding all the related information from the Periodic Table of Chemical Elements. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-02-29T02:11:00", "date_created": "2020-02-29T02:11:01", "home_page": "https://github.com/ontologyofchemicalelements/OCE", "version": "Vision Release: 1.0.29", "has_ontology_language": "OWL", "nb_classes": 249, "nb_individuals": 0, "nb_properties": 7, "max_depth": 12, "max_children": 23, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OCHV", "name": "Ontology of Consumer Health Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 481, "download_url": "media/ontologies/OCHV/1/ochv.owl", "submission_id": 1, "domain": null, "description": "A SKOS-encoded implementation of the \"Open Access, Collaborative Consumer Health Vocabulary Initiative\" by the University of Utah (consumerhealthvocab.org and layhealthinformatics.com)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-21T00:00:00", "date_created": "2016-01-21T05:00:15", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 87879, "nb_properties": 19, "max_depth": 1, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OCIMIDO", "name": "Ocular Immune-Mediated Inflammatory Diseases Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4604, "download_url": "media/ontologies/OCIMIDO/2/ocimido.owl", "submission_id": 2, "domain": null, "description": "Application ontology for Ocular Immune-mediated Inflammatory Diseases, built from domain experts in ophthalmology, clinical guidelines, and enhanced with patient-preferred terms.", "documentation": "https://sap218.github.io/ocimido/", "publication": "https://doi.org/10.1016/j.compbiomed.2021.104542", "publications": null, "products": null, "taxon": null, "date_released": "2020-07-07T00:00:00", "date_created": "2021-06-16T14:23:13", "home_page": "https://github.com/sap218/ocimido", "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 661, "nb_individuals": 0, "nb_properties": 9, "max_depth": 17, "max_children": 47, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OCMR", "name": "Ontology of Chinese Medicine for Rheumatism", "status": "Classified", "topics": null, "species": null, "submission": { "id": 599, "download_url": "media/ontologies/OCMR/3/ocmr.owl", "submission_id": 3, "domain": null, "description": "OCMR is a biomedical ontology that represents anti-rheumatism traditional Chinese medicines and related information.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-21T01:08:03", "date_created": "2017-04-21T01:08:03", "home_page": "https://github.com/biomedontology/ocmr", "version": "Vision Release; 1.0.11", "has_ontology_language": "OWL", "nb_classes": 3359, "nb_individuals": 10, "nb_properties": 112, "max_depth": 26, "max_children": 165, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OCVDAE", "name": "Ontology of Cardiovascular Drug Adverse Events", "status": "Classified", "topics": null, "species": null, "submission": { "id": 748, "download_url": "media/ontologies/OCVDAE/2/ocvdae.owl", "submission_id": 2, "domain": null, "description": "OCVDAE is a biomedical ontology of cardiovascular disease drug-associated adverse events", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-12-29T00:00:00", "date_created": "2016-12-29T23:50:23", "home_page": null, "version": "Vision Release; 1.0.4", "has_ontology_language": "OWL", "nb_classes": 2948, "nb_individuals": 89, "nb_properties": 141, "max_depth": 17, "max_children": 58, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ODAE", "name": "Ontology of Drug Adverse Events", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2175, "download_url": "media/ontologies/ODAE/1/odae.owl", "submission_id": 1, "domain": null, "description": "The Ontology of Drug Adverse Events (ODAE) is a biomedical ontology in the area of drug adverse events, developed by following OBO Foundry principles (e.g., openness, collaboration). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-01-12T00:00:00", "date_created": "2019-01-12T18:33:03", "home_page": "https://github.com/ODAE-ontology/ODAE", "version": "Vision Release: 1.0.08", "has_ontology_language": "OWL", "nb_classes": 3672, "nb_individuals": 3, "nb_properties": 130, "max_depth": 15, "max_children": 57, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ODHT", "name": "Digital Health Technologies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5362, "download_url": "media/ontologies/ODHT/2/odht.owl", "submission_id": 2, "domain": null, "description": "An ontology of digital health technologies (DHTs) with a specific focus on DHT use in clinical trials.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-08-30T00:00:00", "date_created": "2022-09-19T15:54:26", "home_page": null, "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 39, "nb_individuals": 781, "nb_properties": 6, "max_depth": 3, "max_children": 9, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ODNAE", "name": "Ontology of Drug Neuropathy Adverse Events", "status": "Classified", "topics": null, "species": null, "submission": { "id": 463, "download_url": "media/ontologies/ODNAE/3/odnae.owl", "submission_id": 3, "domain": null, "description": "ODNAE is an extension of OAE with a focus on drug-associated neuropathy adverse events.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-05-17T01:09:11", "date_created": "2016-05-17T01:09:11", "home_page": "https://github.com/odnae/odnae", "version": "Vision Release; 1.0.13", "has_ontology_language": "OWL", "nb_classes": 1544, "nb_individuals": 10, "nb_properties": 90, "max_depth": 22, "max_children": 213, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OFSMR", "name": "Open Predictive Microbiology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 843, "download_url": "media/ontologies/OFSMR/19/ofsmr.owl", "submission_id": 19, "domain": null, "description": "Food-matrix ontology for Open Food Safety Model Repository", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-11-23T00:00:00", "date_created": "2017-11-22T10:55:11", "home_page": "https://sites.google.com/site/openfsmr/open-fsmr-detailfilter", "version": "0.4", "has_ontology_language": "OWL", "nb_classes": 156, "nb_individuals": 0, "nb_properties": 2, "max_depth": 7, "max_children": 14, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGMD_OWL", "name": "Ontology of Glucose Metabolism Disorder OWL View", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 277, "download_url": "media/ontologies/OGMD_OWL/1/ogmd_owl.owl", "submission_id": 1, "domain": null, "description": "OWL file of the ontology", "documentation": null, "publication": "http://www.med.kobe-u.ac.jp/journal/contents/55/E53.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2011-10-10T07:00:00", "date_created": "2011-10-20T14:39:19", "home_page": "https://sourceforge.net/projects/ogmd/", "version": "3.0", "has_ontology_language": "OWL", "nb_classes": 175, "nb_individuals": 0, "nb_properties": 2, "max_depth": 12, "max_children": 16, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "OBIWS", "name": "Bioinformatics Web Service Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 185, "download_url": "media/ontologies/OBIWS/2/obiws.owl", "submission_id": 2, "domain": null, "description": "The Bioinformatics Web Services ontology (OBIws) is an ontology that extends the Ontology for Biomedical Investigations (OBI) to build an Ontology that supports consistent annotation of Bioinformatics Web services. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-12-18T08:00:00", "date_created": "2012-12-18T23:13:11", "home_page": "http://code.google.com/p/obi-webservice/", "version": "Release v1.1", "has_ontology_language": "OWL", "nb_classes": 228, "nb_individuals": 34, "nb_properties": 27, "max_depth": 33, "max_children": 34, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGG", "name": "The Ontology of Genes and Genomes", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1039, "download_url": "media/ontologies/OGG/4/ogg.owl", "submission_id": 4, "domain": null, "description": "A formal ontology of genes and genomes of biological organisms.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ogg.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ogg.owl" } ], "taxon": null, "date_released": "2017-12-13T10:10:30.509253", "date_created": "2017-12-13T10:10:30.509274", "home_page": "https://bitbucket.org/hegroup/ogg", "version": null, "has_ontology_language": "OWL", "nb_classes": 69689, "nb_individuals": 0, "nb_properties": 81, "max_depth": 12, "max_children": 20710, "avg_children": 810, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "694a56219122d68e6b29c7c0be9ec052" } }, { "acronym": "OGG-MM", "name": "Ontology of Genes and Genomes - Mouse", "status": "Classified", "topics": null, "species": null, "submission": { "id": 580, "download_url": "media/ontologies/OGG-MM/2/ogg-mm.owl", "submission_id": 2, "domain": null, "description": "OGG-Mm is the OGG Mus musculus (mouse) subset. The OGG (Ontology of Genes and Genomes) is a formal ontology of genes and genomes of biological organisms. OGG is developed by following OBO Foundry principles and aligning with the BFO top ontology. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-12-02T00:00:00", "date_created": "2016-12-02T19:21:57", "home_page": "https://bitbucket.org/hegroup/ogg-mouse", "version": "Vision Release: 1.0.63", "has_ontology_language": "OWL", "nb_classes": 69433, "nb_individuals": 0, "nb_properties": 81, "max_depth": 9, "max_children": 29666, "avg_children": 1876, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PROCCHEMICAL", "name": "Chemical Process", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 398, "download_url": "media/ontologies/PROCCHEMICAL/1/procchemical.owl", "submission_id": 1, "domain": null, "description": "Chemical process", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-08T00:00:00", "date_created": "2016-01-07T21:36:12", "home_page": null, "version": "2.3", "has_ontology_language": "OWL", "nb_classes": 3535, "nb_individuals": 1226, "nb_properties": 358, "max_depth": 12, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGMD", "name": "Ontology of Glucose Metabolism Disorder", "status": "Classified", "topics": null, "species": null, "submission": { "id": 104, "download_url": "media/ontologies/OGMD/33/ogmd.obo", "submission_id": 33, "domain": null, "description": "Including the disease names. phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.)\r\nOWL file is downloadable as the different view here. ", "documentation": null, "publication": "http://www.med.kobe-u.ac.jp/journal/contents/55/E53.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2017-09-28T01:08:51", "date_created": "2017-09-28T01:08:51", "home_page": "http://sourceforge.net/projects/ogmd/", "version": "1", "has_ontology_language": "OBO", "nb_classes": 134, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 15, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGI", "name": "Ontology for genetic interval", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 438, "download_url": "media/ontologies/OGI/18/ogi.owl", "submission_id": 18, "domain": null, "description": "Using BFO as its framwork, OGI formalized the genomic element by defining an upper class 'genetic interval'.\r\n\r\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic_Acid_Base_Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-21T01:07:21", "date_created": "2015-08-21T01:07:21", "home_page": "https://code.google.com/p/ontology-for-genetic-interval/", "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 184, "nb_individuals": 23, "nb_properties": 59, "max_depth": 11, "max_children": 13, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGMS", "name": "Ontology for General Medical Science", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7461, "download_url": "media/ontologies/OGMS/20/ogms.owl", "submission_id": 20, "domain": "health", "description": "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/21347182", "title": "Toward an ontological treatment of disease and diagnosis", "preferred": true }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/25991121", "title": "Biomarkers in the Ontology for General Medical Science" } ], "products": [ { "id": "ogms.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ogms.owl" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2025-07-07T12:48:13.838402", "date_created": "2025-07-07T12:48:13.838410", "home_page": "https://github.com/OGMS/ogms", "version": null, "has_ontology_language": "OWL", "nb_classes": 18, "nb_individuals": 9, "nb_properties": 104, "max_depth": 5, "max_children": 4, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "638cb675c306d2c8f58f4f4f44c0d580" } }, { "acronym": "TOP-MENELAS", "name": "Menelas Project Top-Level Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 153, "download_url": "media/ontologies/TOP-MENELAS/4/top-menelas.owl", "submission_id": 4, "domain": null, "description": "The two main goals MENELAS contributes to are to (i) Provide better account of and better access to medical information through natural languages in order to help physicians in their daily practice, and to (ii) Enhance European cooperation by multilingual access to standardised medical nomenclatures. The major achievements of MENELAS are the realisation of its two functional systems: (i) The Document Indexing System encodes free text PDSs into both an internal representation (a set of Conceptual Graphs) and international nomenclature codes (ICD-9-CM). Instances of the Document Indexing System have been realised for French, English and Dutch ; (ii) The Consultation System allows users to access the information contained in PDSs previously indexed by the Document Indexing System. The test domain for the project was coronary diseases. The existing prototype shows promising results for information retrieval from natural language PDSs and for automatically encoding PDSs into an existing classification such as ICD-9-CM. A set of components, tools, knowledge bases and methods has also been produced by the project. These include language-independent ontology and models for the domain of coronary diseases; conceptual description of the relevant ICD-9-CM codes.\r\nThis ontology includes a top-ontology, a top-domain ontology and a domain ontology (Coronay diseases surgery). The menelas-top ontology here is the part of the whole ontology without any reference to medical domain.\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-03T07:00:00", "date_created": "2013-07-15T14:16:13", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 458, "nb_individuals": 0, "nb_properties": 298, "max_depth": 11, "max_children": 16, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CARRE", "name": "CARRE Risk Factor ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 295, "download_url": "media/ontologies/CARRE/3/carre.owl", "submission_id": 3, "domain": null, "description": "Clinical risk factors, evidence and observables", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-09-30T00:00:00", "date_created": "2014-12-08T16:18:11", "home_page": "http://www.carre-project.eu", "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 175, "nb_individuals": 0, "nb_properties": 127, "max_depth": 2, "max_children": 152, "avg_children": 152, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBI_IEDB_view", "name": "IEDB View", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 42, "download_url": "media/ontologies/OBI_IEDB_view/1/obi_iedb_view.owl", "submission_id": 1, "domain": null, "description": "OBI view for IMMUNE EPITOPE DATABASE (IEDB) community. The OBI terms used by IEDB were tagged by inSubSet annotation with the value \"IEDB\". The IEDB friendly labels were provided as IEDB alternative term.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-01-27T08:00:00", "date_created": "2012-01-27T20:31:42", "home_page": null, "version": "2011-12-13", "has_ontology_language": "OWL", "nb_classes": 3519, "nb_individuals": 149, "nb_properties": 77, "max_depth": 40, "max_children": 332, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "DHMO", "name": "RADx Data Hub Metadata Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7026, "download_url": "media/ontologies/DHMO/1/dhmo.skos", "submission_id": 1, "domain": null, "description": "An initial version of the RADx Data Hub Metadata Ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-11-26T00:00:00", "date_created": "2024-11-27T00:52:49", "home_page": null, "version": "2024-11-06", "has_ontology_language": "SKOS", "nb_classes": 145, "nb_individuals": 1933, "nb_properties": 62, "max_depth": 1, "max_children": 145, "avg_children": 145, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "XCO", "name": "Experimental condition ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8108, "download_url": "media/ontologies/XCO/163/xco.owl", "submission_id": 163, "domain": "health", "description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22654893", "title": "Three ontologies to define phenotype measurement data." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24103152", "title": "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications." } ], "products": [ { "id": "xco.owl", "ontology_purl": "http://purl.obolibrary.org/obo/xco.owl" }, { "id": "xco.obo", "ontology_purl": "http://purl.obolibrary.org/obo/xco.obo" } ], "taxon": null, "date_released": "2026-04-13T13:12:35.806887", "date_created": "2026-04-13T13:12:35.806891", "home_page": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000", "version": null, "has_ontology_language": "OWL", "nb_classes": 1796, "nb_individuals": 0, "nb_properties": 3, "max_depth": 9, "max_children": 79, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7aba6e853fd72c67dcee0703b7a0fe67" } }, { "acronym": "FISHO", "name": "Fish Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 649, "download_url": "media/ontologies/FISHO/1/fisho.owl", "submission_id": 1, "domain": null, "description": "This Fish Ontology is an ontology created as how the author views the fish structure following the book \"The Diversity of Fishes: Biology, Evolution and Ecology\" as the main reference, which covers one part of view on ichthyology, with an emphasis on diversity and adaptation. This ontology is created with the mindset of categorizing fish automatically based on the attributes and terms mined from the fish specimen.\r\n\r\nMost of the basic organization from this ontology follows Nelson's research due to its synthetic and broad approach, while recognizing that Nelson's conclusions are one of many alternative interpretations of the literature, which is mostly agreed by our main references, and many fish and fisheries researchers.\r\n\r\nMost of the classification used in this ontology is in no means completed and just following the recent classification provided by the books\r\n\r\nFor now our work focused more on two group of fish which is early jawless fish, and advanced jawed fishes. The classification from both of this group are structured following the reference.", "documentation": "https://github.com/mohdnajib1985/FishOntology", "publication": "https://peerj.com/preprints/3020/", "publications": null, "products": null, "taxon": null, "date_released": "2017-08-28T00:00:00", "date_created": "2017-08-28T08:51:50", "home_page": "https://mohdnajib1985.github.io/FOWebPage/", "version": "Version 1.0.3 (Possible addition)-Considering to add more fish study related terms in the ontology such as fish immune sytem, and Fish Locomotion and Feeding Behavior.-Also focused on completing other classification of fish, and adding more relationships between the classes.Version 1.0.2-Added a lot of annotations and metadata for fish terms, and added several more subclasses for the ontology. Version 1.0.1-Change the structure and the hierarchy of a lot of classes to follow the main references. Several classes are deleted and marked as \"deprecated\" or \"In Review\" in case they might be useful later.Version 1.0.0-The first version of the fish ontology is created.", "has_ontology_language": "OWL", "nb_classes": 386, "nb_individuals": 8, "nb_properties": 28, "max_depth": 8, "max_children": 21, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FLYGLYCODB", "name": "FlyGlycoDB", "status": "Classified", "topics": null, "species": null, "submission": { "id": 447, "download_url": "media/ontologies/FLYGLYCODB/2/flyglycodb.owl", "submission_id": 2, "domain": null, "description": "Ontology to describe glycogenes of Drosophila. Includes mutants, activity, references and links to FlyBase and UniProt.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-12-22T00:00:00", "date_created": "2016-12-22T06:03:35", "home_page": "http://fly.glycoinfo.org", "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 114, "nb_individuals": 0, "nb_properties": 21, "max_depth": 4, "max_children": 14, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "foaf", "name": "FOAF (people, organizations, groups)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 247, "download_url": "media/ontologies/foaf/1/foaf.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl. It contains terms relating to people, groups and organizations from the http://xmlns.com/foaf/0.1/ namespace that are included in the vivo ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T10:20:55", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 15, "nb_individuals": 0, "nb_properties": 24, "max_depth": 1, "max_children": 11, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FOAF", "name": "Friend of a Friend Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2240, "download_url": "media/ontologies/FOAF/1/foaf.owl", "submission_id": 1, "domain": null, "description": "Friend of a Friend Vocabulary", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-01-31T00:00:00", "date_created": "2019-02-01T01:38:31", "home_page": null, "version": "0.99", "has_ontology_language": "OWL", "nb_classes": 22, "nb_individuals": 0, "nb_properties": 40, "max_depth": 2, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FOBI", "name": "Food-Biomarker Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5069, "download_url": "media/ontologies/FOBI/7/fobi.owl", "submission_id": 7, "domain": "diet, metabolomics, and nutrition", "description": "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/32556148", "title": "FOBI: an ontology to represent food intake data and associate it with metabolomic data" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/34601570", "title": "The fobitools framework: the first steps towards food enrichment analysis" } ], "products": [ { "id": "fobi.owl", "title": "FOBI is an ontology to represent food intake data and associate it with metabolomic data", "format": "owl-rdf/xml", "ontology_purl": "http://purl.obolibrary.org/obo/fobi.owl" } ], "taxon": null, "date_released": "2022-05-09T12:45:36.999712", "date_created": "2022-05-09T12:45:36.999726", "home_page": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology", "version": null, "has_ontology_language": "OWL", "nb_classes": 1334, "nb_individuals": 0, "nb_properties": 4, "max_depth": 9, "max_children": 148, "avg_children": 107, "classifiable": true, "nb_inconsistent": 148, "indexed": true, "md5sum": "894f2bbe2c41f1ac47e92e24b94d14dc" } }, { "acronym": "FOODON", "name": "Food Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7853, "download_url": "media/ontologies/FOODON/91/foodon.owl", "submission_id": 91, "domain": "diet, metabolomics, and nutrition", "description": "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/31304272", "title": "FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration" } ], "products": [ { "id": "foodon.owl", "title": "FoodOn ontology with import file references and over 9,000 food products", "format": "owl-rdf/xml", "ontology_purl": "http://purl.obolibrary.org/obo/foodon.owl" }, { "id": "foodon_core.owl", "title": "FoodOn core ontology (currently the same as foodon.owl)", "format": "owl-rdf/xml", "ontology_purl": "http://purl.obolibrary.org/obo/foodon_core.owl" } ], "taxon": null, "date_released": "2026-01-05T12:18:42.029495", "date_created": "2026-01-05T12:18:42.029498", "home_page": "https://foodon.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 39683, "nb_individuals": 435, "nb_properties": 65, "max_depth": 33, "max_children": 573, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "4fa29b6e2f75271adb11169965becb5e" } }, { "acronym": "HCDR", "name": "Homelessness and Clinical Data Recording", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3298, "download_url": "media/ontologies/HCDR/1/hcdr.owl", "submission_id": 1, "domain": null, "description": "This ontology utilizes the European Typology of Homelessness and Housing Exclusion (ETHOS), a respected conceptual framework used to define degrees of housing insecurity and homelessness internationally, to conceptualize, define, and link homelessness in SNOMED, Read CTV3, and Read 2 codes to clinical data extraction. The ontology uses the ETHOS as a general framework, leading to endpoints represented by codes from across the three databases. This is useful for researchers and medical professionals seeking to understand how homelessness is represented in clinical data, how homelessness is defined internationally, and what types of services are available for homeless individuals. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-01-21T00:00:00", "date_created": "2020-01-21T21:56:18", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 119, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 6, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IMOBO", "name": "Intelligent Medicine oriented Biobank Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6647, "download_url": "media/ontologies/IMOBO/1/imobo.owl", "submission_id": 1, "domain": null, "description": "Intelligent Medicine oriented Biobank Ontology (IMOBO) is an ontology developed to facilitate the annotation and modeling of biobank repositories, metadata, and biobanking administration, supporting the paradigm shift towards AI in medicine. IMOBO focuses on AI modeling in both clinical applications and healthcare, with a specific emphasis on engaging clinical doctors and patients in data collection. Its goal is to structure knowledge for the future patient-centered medical paradigm. As measurement technologies and medical artificial intelligence continue to evolve, IMOBO will continually enhance its content and structure.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-06-04T00:00:00", "date_created": "2024-06-04T06:29:18", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 102, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 21, "avg_children": 8, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HCIOTO", "name": "HealthCareOntology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2075, "download_url": "media/ontologies/HCIOTO/1/hcioto.owl", "submission_id": 1, "domain": null, "description": "A sensor based health care ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-12-05T00:00:00", "date_created": "2018-12-05T18:40:59", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 49, "nb_individuals": 0, "nb_properties": 8, "max_depth": 4, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LEO", "name": "Living Environment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7038, "download_url": "media/ontologies/LEO/1/leo.owl", "submission_id": 1, "domain": null, "description": "The Living Environment Ontology (LEO) is a structured framework designed to classify and standardize concepts related to human living conditions. It integrates keywords and concepts from diverse sources, such as questionnaires, references, and abstracts, to create a comprehensive ontology for assessing human living environments.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-12-05T00:00:00", "date_created": "2024-12-05T21:38:04", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 234, "nb_individuals": 0, "nb_properties": 6, "max_depth": 8, "max_children": 16, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MARC-LANGUAGES", "name": "MARC List for Languages", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6580, "download_url": "media/ontologies/MARC-LANGUAGES/271/marc-languages.skos", "submission_id": 271, "domain": null, "description": "MARC List for Languages provides three-character lowercase alphabetic strings that serve as the identifiers of languages and language groups. The codes are usually based on the first three letters of the English form or, in some cases, vernacular form of the corresponding language name. The codes are varied where necessary to resolve conflicts and are not intended to be abbreviations of a language name. When the name of a language is changed in the list, the original code is generally retained. The codes in this list are equivalent to those of ISO 639-2 (Bibliographic) codes and some codes from ISO 639-5, although the language name labels may differ. They are linked to the equivalent codes in ISO 639-2 and ISO 639-5 and the corresponding two-character codes in ISO 639-1.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-04-25T00:00:00", "date_created": "2024-04-29T23:31:45", "home_page": "http://id.loc.gov/vocabulary/languages.html", "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 485, "nb_properties": 0, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MCO4HKE", "name": "Multiplex Classification Ontology for the HyperKvasir Experiment", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6891, "download_url": "media/ontologies/MCO4HKE/2/mco4hke.owl", "submission_id": 2, "domain": null, "description": "Ontology used for one of the experiments from the Multiplex Classification Framework (paper under review). This ontology is based on the set of classes from the HyperKvasir dataset. The HyperKvasir dataset is a manually annotated, multi-class image and video dataset for gastrointestinal endoscopy (Borgli et al., 2020). For the Multiplex experiment, only pathological finding labels were used (such as “Esophagitis grade A,” “Esophagitis grade B-D,” and “Hemorrhoids\").\r\n\r\nData Article: Borgli et al. (2020). HyperKvasir, a comprehensive multi-class image and video dataset for gastrointestinal endoscopy. Scientific Data, 7(1), 283. https://doi.org/10.1038/s41597-020-00622-y", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-09-07T00:00:00", "date_created": "2024-09-07T16:52:09", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 19, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 6, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO", "name": "Orphanet Rare Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 607, "download_url": "media/ontologies/ORDO/11/ordo.owl", "submission_id": 11, "domain": null, "description": "The Orphanet Rare Disease ontology (ORDO) is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. \r\n\r\nIt derived from the Orphanet database (www.orpha.net <http://www.orpha.net>) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, SNOMED CT, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10). \r\n\r\nThe ontology will be maintained by Orphanet and further populated with new data. Orphanet classifications can be browsed in the OLS view.\r\n\r\nThe Orphanet Rare Disease Ontology is updated monthly and follows the OBO guidelines on deprecation of terms. It constitutes the official ontology of rare diseases produced and maintained by Orphanet (INSERM, US14). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-06T01:07:34", "date_created": "2017-07-06T01:07:34", "home_page": "http://www.orpha.net", "version": "2.4", "has_ontology_language": "OWL", "nb_classes": 13504, "nb_individuals": 0, "nb_properties": 24, "max_depth": 11, "max_children": 3795, "avg_children": 16, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "POEM", "name": "Psychometric Ontology of Experiences and Measures", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7118, "download_url": "media/ontologies/POEM/8/poem.owl", "submission_id": 8, "domain": null, "description": "POEM supports the usage of psychometric instruments, particularly questionnaires, representing their structure, measured constructs, intended contexts, and provenance.", "documentation": null, "publication": "https://tetherless-world.github.io/POEM/publications/", "publications": null, "products": null, "taxon": null, "date_released": "2025-01-08T02:13:42", "date_created": "2025-01-08T02:13:46", "home_page": "https://tetherless-world.github.io/POEM/", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 1636, "nb_individuals": 28, "nb_properties": 230, "max_depth": 13, "max_children": 118, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PREO", "name": "Presence Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2787, "download_url": "media/ontologies/PREO/1/preo.owl", "submission_id": 1, "domain": null, "description": "The Presence Ontology is a systematic vocabulary of terms with defined relationships that models the encounters taking place every day among providers, patients, and family members or friends in environments such as hospitals and clinics. The Presence Ontology provides a conceptual model for the human experience in medicine. This is a preliminary approach, but further use of methods we have developed here may aid in providing clarity and consensus to topics in healthcare. The ontology is also a model for interdisciplinary collaboration, as it was developed in conjunction with experts from bioinformatics, medicine, anthropology, business, and communication sciences through multiple iterative stages.", "documentation": "http://onto-apps.stanford.edu/presence", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-07-27T00:00:00", "date_created": "2019-07-27T22:09:56", "home_page": "http://med.stanford.edu/presence/about.html", "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 276, "nb_individuals": 0, "nb_properties": 24, "max_depth": 7, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 3, "indexed": true, "md5sum": null } }, { "acronym": "WWECA", "name": "Women with Epilepsy of Child-bearing Age Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6422, "download_url": "media/ontologies/WWECA/4/wweca.owl", "submission_id": 4, "domain": null, "description": "This is an ontology for the management of women of child-bearing age with epilepsy.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-02-18T00:00:00", "date_created": "2024-02-18T01:18:27", "home_page": null, "version": "3.0", "has_ontology_language": "OWL", "nb_classes": 691, "nb_individuals": 0, "nb_properties": 0, "max_depth": 10, "max_children": 26, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FHHO", "name": "Family Health History Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 60, "download_url": "media/ontologies/FHHO/1/fhho.owl", "submission_id": 1, "domain": null, "description": "The FHHO facilitates representing the family health histories of persons related by biological and/or social family relationships (e.g. step, adoptive) who share genetic, behavioral, and/or environmental risk factors for disease. SWRL rules are included to compute 3 generations of biological relationships based on parentage and family history findings based on personal health findings.", "documentation": null, "publication": "http://healthsystems.engr.wisc.edu/Alumni/JanePeace.html", "publications": null, "products": null, "taxon": null, "date_released": "2008-09-23T07:00:00", "date_created": "2009-05-10T21:26:51", "home_page": "http://healthsystems.engr.wisc.edu/Alumni/JanePeace.html", "version": "1", "has_ontology_language": "OWL", "nb_classes": 238, "nb_individuals": 12, "nb_properties": 433, "max_depth": 6, "max_children": 63, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FBBT", "name": "Drosophila gross anatomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8085, "download_url": "media/ontologies/FBBT/51/fbbt.owl", "submission_id": 51, "domain": "anatomy and development", "description": "An ontology representing the gross anatomy of Drosophila melanogaster.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24139062", "title": "The Drosophila anatomy ontology", "preferred": true }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22402613", "title": "A strategy for building neuroanatomy ontologies" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22180411", "title": "The Virtual Fly Brain Browser and Query Interface" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/16381917", "title": "FlyBase: anatomical data, images and queries" } ], "products": [ { "id": "fbbt.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fbbt.owl" }, { "id": "fbbt.obo", "ontology_purl": "http://purl.obolibrary.org/obo/fbbt.obo" }, { "id": "fbbt.json", "ontology_purl": "http://purl.obolibrary.org/obo/fbbt.json" }, { "id": "fbbt/fbbt-simple.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.owl" }, { "id": "fbbt/fbbt-simple.obo", "ontology_purl": "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.obo" } ], "taxon": { "id": "NCBITaxon:7227", "label": "Drosophila" }, "date_released": "2026-04-06T12:51:44.786205", "date_created": "2026-04-06T12:51:44.786211", "home_page": "http://purl.obolibrary.org/obo/fbbt", "version": null, "has_ontology_language": "OWL", "nb_classes": 29751, "nb_individuals": 0, "nb_properties": 116, "max_depth": 35, "max_children": 7771, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "14a5aed3531afd5f7313a535e5b15af1" } }, { "acronym": "FBCV", "name": "FlyBase Controlled Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8086, "download_url": "media/ontologies/FBCV/44/fbcv.owl", "submission_id": 44, "domain": "organisms", "description": "A structured controlled vocabulary used for various aspects of annotation by FlyBase.", "documentation": null, "publication": null, "publications": [], "products": [ { "id": "fbcv.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fbcv.owl" }, { "id": "fbcv.obo", "ontology_purl": "http://purl.obolibrary.org/obo/fbcv.obo" }, { "id": "fbcv.json", "ontology_purl": "http://purl.obolibrary.org/obo/fbcv.json" } ], "taxon": null, "date_released": "2026-04-06T12:57:10.305897", "date_created": "2026-04-06T12:57:10.305900", "home_page": "http://purl.obolibrary.org/obo/fbcv", "version": null, "has_ontology_language": "OWL", "nb_classes": 2338, "nb_individuals": 0, "nb_properties": 43, "max_depth": 14, "max_children": 212, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "83f93913f1af05f3a29036615f85d99e" } }, { "acronym": "FB-BT", "name": "Drosophila Gross Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 718, "download_url": "media/ontologies/FB-BT/40/fb-bt.obo", "submission_id": 40, "domain": null, "description": "A structured controlled vocabulary of the anatomy of <i>Drosophila melanogaster</i>.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-09-07T01:02:06", "date_created": "2017-09-07T01:02:06", "home_page": "http://sourceforge.net/p/fbbtdv/wiki/Home/", "version": "2017-09-06", "has_ontology_language": "OBO", "nb_classes": 10421, "nb_individuals": 0, "nb_properties": 47, "max_depth": 15, "max_children": 528, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FB-DV", "name": "Drosophila Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 337, "download_url": "media/ontologies/FB-DV/19/fb-dv.obo", "submission_id": 19, "domain": null, "description": "A structured controlled vocabulary of the development of <i>Drosophila melanogaster</i>.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-10-15T01:02:12", "date_created": "2016-10-15T01:02:12", "home_page": "http://sourceforge.net/p/fbbtdv/wiki/Home/", "version": "2016-10-14", "has_ontology_language": "OBO", "nb_classes": 274, "nb_individuals": 0, "nb_properties": 6, "max_depth": 7, "max_children": 2, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FB-CV", "name": "FlyBase Controlled Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 22, "download_url": "media/ontologies/FB-CV/21/fb-cv.owl", "submission_id": 21, "domain": null, "description": "A structured controlled vocabulary used for various aspects of annotation by FlyBase.<br>This ontology is maintained by FlyBase for various aspects of annotation not covered, or not yet covered, by other OBO ontologies. If and when community ontologies are available for the domains here covered FlyBase will use them. This ontology includes the Drosophila phenotype ontology (DPO), provided here together with FBcv for legacy purposes.", "documentation": "http://flybase.bio.indiana.edu/.data/docs/refman/refman-G.html#G.2", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-06T01:01:49", "date_created": "2017-07-06T01:01:49", "home_page": "http://sourceforge.net/p/fbcv/wiki/Home/", "version": "2014-09-23", "has_ontology_language": "OWL", "nb_classes": 521, "nb_individuals": 0, "nb_properties": 28, "max_depth": 15, "max_children": 72, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FBbi", "name": "Biological Imaging Methods Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 227, "download_url": "media/ontologies/FBbi/14/fbbi.obo", "submission_id": 14, "domain": null, "description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-09-14T01:02:47", "date_created": "2016-09-14T01:02:48", "home_page": "http://cellimagelibrary.org/", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 624, "nb_individuals": 0, "nb_properties": 2, "max_depth": 9, "max_children": 19, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FBBI", "name": "Biological Imaging Methods Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8070, "download_url": "media/ontologies/FBBI/9/fbbi.owl", "submission_id": 9, "domain": "investigations", "description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "fbbi.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fbbi.owl" } ], "taxon": null, "date_released": "2026-03-30T12:44:07.482197", "date_created": "2026-03-30T12:44:07.482200", "home_page": "http://cellimagelibrary.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 678, "nb_individuals": 59, "nb_properties": 118, "max_depth": 9, "max_children": 109, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "162ba16dcbb1510ae02f1591259b0940" } }, { "acronym": "FBDV", "name": "Drosophila development", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8087, "download_url": "media/ontologies/FBDV/46/fbdv.owl", "submission_id": 46, "domain": "anatomy and development", "description": "A structured controlled vocabulary of the development of Drosophila melanogaster.", "documentation": null, "publication": null, "publications": [], "products": [ { "id": "fbdv.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fbdv.owl" }, { "id": "fbdv.obo", "ontology_purl": "http://purl.obolibrary.org/obo/fbdv.obo" }, { "id": "fbdv.json", "ontology_purl": "http://purl.obolibrary.org/obo/fbdv.json" }, { "id": "fbdv/fbdv-simple.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.owl" }, { "id": "fbdv/fbdv-simple.obo", "ontology_purl": "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.obo" } ], "taxon": { "id": "NCBITaxon:7227", "label": "Drosophila" }, "date_released": "2026-04-06T12:57:46.042011", "date_created": "2026-04-06T12:57:46.042016", "home_page": "http://purl.obolibrary.org/obo/fbdv", "version": null, "has_ontology_language": "OWL", "nb_classes": 250, "nb_individuals": 0, "nb_properties": 33, "max_depth": 7, "max_children": 98, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "76e69621a355bec9be0faec33911097d" } }, { "acronym": "FB-SP", "name": "Fly Taxonomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 414, "download_url": "media/ontologies/FB-SP/7/fb-sp.obo", "submission_id": 7, "domain": null, "description": "The taxonomy of the family <i>Drosophilidae</i> (largely after Baechli) and of other taxa referred to in FlyBase.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-06-21T01:02:50", "date_created": "2013-06-21T01:02:50", "home_page": "http://www.flybase.org/", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 6600, "nb_individuals": 0, "nb_properties": 0, "max_depth": 35, "max_children": 207, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FCC1", "name": "Fernald Community Cohort N", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3296, "download_url": "media/ontologies/FCC1/1/fcc1.owl", "submission_id": 1, "domain": null, "description": "Fernald Community Cohort meta data", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-10-03T00:00:00", "date_created": "2019-10-03T22:17:36", "home_page": "http://www.semanticweb.org/diwaleva/ontologies/2019/9/fcc-ontology", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 1, "nb_properties": 3, "max_depth": 2, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FDC-GDMT", "name": "Ontology for Generic Dataset Metadata Template", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5200, "download_url": "media/ontologies/FDC-GDMT/12/fdc-gdmt.skos", "submission_id": 12, "domain": null, "description": "Controlled terms and semantic properties used in the FAIR Data Collective's Generic Dataset Metadata Template. ", "documentation": "https://github.com/fair-data-collective/generic-dataset-metadata-template", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-02-16T00:00:00", "date_created": "2022-06-25T19:04:25", "home_page": "https://github.com/fair-data-collective/generic-dataset-metadata-template", "version": "v0.3.7", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 998, "nb_properties": 62, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "x", "name": "x", "status": "Classified", "topics": [ "x" ], "species": [ "x" ], "submission": { "id": 7654, "download_url": "media/ontologies/x/1/x.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-10-16T09:35:32.400875", "date_created": "2025-10-16T09:35:32.400867", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 7, "nb_properties": 3, "max_depth": 2, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "XAO", "name": "Xenopus Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6865, "download_url": "media/ontologies/XAO/35/xao.owl", "submission_id": 35, "domain": "anatomy and development", "description": "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/18817563", "title": "An ontology for Xenopus anatomy and development." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24139024", "title": "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase." } ], "products": [ { "id": "xao.owl", "ontology_purl": "http://purl.obolibrary.org/obo/xao.owl" }, { "id": "xao.obo", "ontology_purl": "http://purl.obolibrary.org/obo/xao.obo" } ], "taxon": { "id": "NCBITaxon:8353", "label": "Xenopus" }, "date_released": "2024-09-09T15:17:12.795073", "date_created": "2024-09-09T15:17:12.795076", "home_page": "http://www.xenbase.org/anatomy/xao.do?method=display", "version": null, "has_ontology_language": "OWL", "nb_classes": 1830, "nb_individuals": 0, "nb_properties": 5, "max_depth": 11, "max_children": 187, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "30590660633bfaedacee70b8bdf14fc7" } }, { "acronym": "HCOT", "name": "HealthCare Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2073, "download_url": "media/ontologies/HCOT/1/hcot.owl", "submission_id": 1, "domain": null, "description": "It is a sensor based health care ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-12-06T00:00:00", "date_created": "2018-12-06T05:21:15", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 49, "nb_individuals": 0, "nb_properties": 8, "max_depth": 4, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HIVHPVFGS", "name": "HIV, HPV, FGS vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6171, "download_url": "media/ontologies/HIVHPVFGS/2/hivhpvfgs.skos", "submission_id": 2, "domain": null, "description": "Vocabulary for testing and vaccination records for HIV, HPV, and FGS in Uganda.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-31T00:00:00", "date_created": "2023-11-01T06:47:28", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 7, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FENICS", "name": "Functional Electrophysiology Nomenclature for Ion Channels", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4726, "download_url": "media/ontologies/FENICS/9/fenics.owl", "submission_id": 9, "domain": null, "description": "The Functional Epilepsy Nomenclature for Ion Channels (FENICS) is allowing the consistent evaluation of electrophysiology experiments on Ion Channels in the context of neurological disorders, in particular epilepsy. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-09-30T00:00:00", "date_created": "2021-11-23T20:51:21", "home_page": null, "version": "0.0.5", "has_ontology_language": "OWL", "nb_classes": 153, "nb_individuals": 50, "nb_properties": 1, "max_depth": 7, "max_children": 20, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FG", "name": "FAIR Genomes", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4937, "download_url": "media/ontologies/FG/4/fg.owl", "submission_id": 4, "domain": null, "description": "The FAIR Genomes semantic metadata schema to power reuse of NGS data in research and healthcare.", "documentation": "https://w3id.org/fair-genomes/ontology", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-02-28T00:00:00", "date_created": "2022-03-01T09:08:54", "home_page": "https://w3id.org/fair-genomes", "version": "1.2-Minor", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 0, "nb_properties": 44, "max_depth": 1, "max_children": 9, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FIDEO", "name": "Food Interactions with Drugs Evidence Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6316, "download_url": "media/ontologies/FIDEO/9/fideo.owl", "submission_id": 9, "domain": "diet, metabolomics, and nutrition", "description": "Food-Drug interactions automatically extracted from scientific literature", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "fideo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fideo.owl" } ], "taxon": null, "date_released": "2024-01-15T12:21:56.223552", "date_created": "2024-01-15T12:21:56.223556", "home_page": "https://gitub.u-bordeaux.fr/erias/fideo", "version": null, "has_ontology_language": "OWL", "nb_classes": 3543, "nb_individuals": 0, "nb_properties": 12, "max_depth": 8, "max_children": 1573, "avg_children": 24, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "25027cebce402117213f8ae2517b48f9" } }, { "acronym": "FIRE", "name": "Fire Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 114, "download_url": "media/ontologies/FIRE/7/fire.owl", "submission_id": 7, "domain": null, "description": "The ontology of Fire was created in order to represent the set of concepts about the fire occurring in natural vegetation, its characteristics, causes and effects, with focus on Cerrado vegetation domain. The fire plays a determinant role on the structure and composition of Cerrado physiognomies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-02-25T02:14:37", "date_created": "2014-02-25T02:14:37", "home_page": null, "version": "0.8", "has_ontology_language": "OWL", "nb_classes": 53, "nb_individuals": 9, "nb_properties": 19, "max_depth": 3, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FISH-AST", "name": "FISH Archaeological Sciences Thesaurus", "status": "Classified", "topics": null, "species": null, "submission": { "id": 385, "download_url": "media/ontologies/FISH-AST/1/fish-ast.skos", "submission_id": 1, "domain": null, "description": "Terminology used for recording the techniques, recovery methods and materials associated with archaeological sciences. Maintained by Historic England on behalf of the FISH Terminology Working Group.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-17T00:00:00", "date_created": "2017-09-11T21:21:13", "home_page": "http://heritagedata.org/live/schemes/560.html", "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 125, "nb_properties": 0, "max_depth": 0, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOAD", "name": "Bilingual Ontology of Alzheimer's Disease and Related Diseases", "status": "Classified", "topics": [], "species": [], "submission": { "id": 26, "download_url": "media/ontologies/ONTOAD/2/ontoad.owl", "submission_id": 2, "domain": null, "description": "OntoAD is a bilingual (English-French) domain ontology for modeling knowledge about Alzheimer's Disease and Related Syndromes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-08-10T00:00:00", "date_created": "2013-12-02T18:00:14", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 5899, "nb_individuals": 2465, "nb_properties": 182, "max_depth": 34, "max_children": 173, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOPARON", "name": "Ontology of Amyotrophic Lateral Sclerosis, all modules", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4056, "download_url": "media/ontologies/ONTOPARON/9/ontoparon.owl", "submission_id": 9, "domain": null, "description": "Ontology of ALS (amyotrophic lateral sclerosis), social module + coordination module + medical module developped by neurologists (ICM) and knowledge engineers (LIMICS).\r\nThis version (11/15/2018) is upload with inferred axioms but without equivalent classe axioms. It serves in this version in a Gate pipeline for a semantic annotation task.\r\nThis version (03/20/2019) is upload with object properties, inferred axioms and equivalent classes axioms.\r\nThis version (11/10/2020) is uploaded with small corrections.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-11-10T00:00:00", "date_created": "2020-11-13T00:13:18", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 2464, "nb_individuals": 0, "nb_properties": 32, "max_depth": 14, "max_children": 73, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ARO", "name": "Antibiotic Resistance Ontology", "status": "Classified", "topics": [], "species": [], "submission": { "id": 7368, "download_url": "media/ontologies/ARO/32/aro.owl", "submission_id": 32, "domain": "microbiology", "description": "Antibiotic resistance genes and mutations", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/31665441", "title": "CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database." } ], "products": [ { "id": "aro.owl", "ontology_purl": "http://purl.obolibrary.org/obo/aro.owl" } ], "taxon": null, "date_released": "2025-06-02T12:00:32.187494", "date_created": "2025-06-02T12:00:32.187498", "home_page": "https://github.com/arpcard/aro", "version": null, "has_ontology_language": "OWL", "nb_classes": 8582, "nb_individuals": 0, "nb_properties": 19, "max_depth": 9, "max_children": 639, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "511f4c94faa4995864e20238cf2afc49" } }, { "acronym": "arp", "name": "Arpenteur", "status": "Classified", "topics": [ "Photogrammetry", "Cultural heritage" ], "species": [ "photogrammetry" ], "submission": { "id": 3157, "download_url": "media/ontologies/arp/1/arp.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-12-09T16:02:44.927411", "date_created": "2019-12-09T16:02:44.927386", "home_page": "http://www.arpenteur.org/", "version": "09-12-2019", "has_ontology_language": "OWL", "nb_classes": 99, "nb_individuals": 0, "nb_properties": 87, "max_depth": 8, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ASDPTO", "name": "Autism Spectrum Disorder Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 220, "download_url": "media/ontologies/ASDPTO/1/asdpto.owl", "submission_id": 1, "domain": null, "description": "Autism Spectrum Disorder Phenotype Ontology encapsulates the Autism Spectrum Disorder behavioral phenotype, informed by the standard ASD assessment instruments and the currently known characteristics of this disorder.\r\nhttp://www.ncbi.nlm.nih.gov/pubmed/24163114", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-01-21T00:00:00", "date_created": "2014-01-21T18:52:37", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 284, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 11, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GLYCORDF", "name": "GlycoRDF", "status": "Classified", "topics": null, "species": null, "submission": { "id": 338, "download_url": "media/ontologies/GLYCORDF/14/glycordf.owl", "submission_id": 14, "domain": null, "description": "Ontology for Glycomcis data.", "documentation": "https://github.com/ReneRanzinger/GlycoRDF/blob/master/ontology/documentation.docx", "publication": "http://bioinformatics.oxfordjournals.org/content/31/6/919.long", "publications": null, "products": null, "taxon": null, "date_released": "2014-09-24T00:00:00", "date_created": "2015-08-17T10:58:01", "home_page": "https://github.com/ReneRanzinger/GlycoRDF", "version": "1.00", "has_ontology_language": "OWL", "nb_classes": 113, "nb_individuals": 219, "nb_properties": 188, "max_depth": 3, "max_children": 32, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GMM", "name": "GoMapMan", "status": "Classified", "topics": null, "species": null, "submission": { "id": 145, "download_url": "media/ontologies/GMM/25/gmm.obo", "submission_id": 25, "domain": null, "description": "GoMapMan is an open web-accessible resource for gene functional annotations in the plant sciences. It was developed to facilitate improvement, consolidation and visualization of gene annotations across several plant species.", "documentation": "http://www.gomapman.org/node/2", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-09T00:00:00", "date_created": "2016-05-16T23:52:51", "home_page": "http://www.gomapman.org/", "version": "1.2", "has_ontology_language": "OBO", "nb_classes": 1896, "nb_individuals": 0, "nb_properties": 0, "max_depth": 7, "max_children": 79, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GNO", "name": "Glycan Naming and Subsumption Ontology (GNOme)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8046, "download_url": "media/ontologies/GNO/31/gno.owl", "submission_id": 31, "domain": "chemistry and biochemistry", "description": "GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). GNOme organizes these stable accessions for interative browsing, for text-based searching, and for automated reasoning with well-defined characterization levels.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.5281/zenodo.6678278", "title": "GNOme - Glycan Naming and Subsumption Ontology" } ], "products": [ { "id": "gno.owl", "description": "Glycan Naming and Subsumption Ontology, OWL format (primary)", "ontology_purl": "http://purl.obolibrary.org/obo/gno.owl" }, { "id": "gno.obo", "description": "Glycan Naming and Subsumption Ontology, OBO format (automated conversion from OWL)", "ontology_purl": "http://purl.obolibrary.org/obo/gno.obo" }, { "id": "gno.json", "description": "Glycan Naming and Subsumption Ontology, JSON format (automated conversion from OWL)", "ontology_purl": "http://purl.obolibrary.org/obo/gno.json" } ], "taxon": null, "date_released": "2026-03-23T12:50:49.199181", "date_created": "2026-03-23T12:50:49.199185", "home_page": "https://gnome.glyomics.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 198340, "nb_individuals": 5, "nb_properties": 0, "max_depth": 14, "max_children": 15477, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "fee41919f43528233f79a44bade5d2c4" } }, { "acronym": "GO", "name": "Gene Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8089, "download_url": "media/ontologies/GO/1798/go.owl", "submission_id": 1798, "domain": "biological systems", "description": "An ontology for describing the function of genes and gene products", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/10802651", "title": "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/33290552", "title": "The Gene Ontology resource: enriching a GOld mine" } ], "products": [ { "id": "go.owl", "page": "http://geneontology.org/page/download-ontology", "title": "GO (OWL edition)", "description": "The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/go.owl" }, { "id": "go.obo", "page": "http://geneontology.org/page/download-ontology", "title": "GO (OBO Format edition)", "description": "Equivalent to go.owl, in obo format", "ontology_purl": "http://purl.obolibrary.org/obo/go.obo" }, { "id": "go.json", "page": "https://github.com/geneontology/obographs/", "title": "GO (JSON edition)", "description": "Equivalent to go.owl, in obograph json format", "ontology_purl": "http://purl.obolibrary.org/obo/go.json" }, { "id": "go/extensions/go-plus.owl", "page": "http://geneontology.org/page/download-ontology", "title": "GO-Plus", "description": "The main ontology plus axioms connecting to select external ontologies, with subsets of those ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/go/extensions/go-plus.owl" }, { "id": "go/go-base.owl", "page": "http://geneontology.org/page/download-ontology", "title": "GO Base Module", "description": "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves", "ontology_purl": "http://purl.obolibrary.org/obo/go/go-base.owl" }, { "id": "go/extensions/go-plus.json", "page": "https://github.com/geneontology/obographs/", "title": "GO-Plus", "description": "As go-plus.owl, in obographs json format", "ontology_purl": "http://purl.obolibrary.org/obo/go/extensions/go-plus.json" }, { "id": "go/go-basic.obo", "page": "http://geneontology.org/page/download-ontology", "title": "GO-Basic, Filtered, for use with legacy tools", "description": "Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies.", "ontology_purl": "http://purl.obolibrary.org/obo/go/go-basic.obo" }, { "id": "go/go-basic.json", "page": "http://geneontology.org/page/download-ontology", "title": "GO-Basic, Filtered, for use with legacy tools (JSON)", "description": "As go-basic.obo, in json format", "ontology_purl": "http://purl.obolibrary.org/obo/go/go-basic.json" }, { "id": "go/extensions/go-taxon-groupings.owl", "page": "http://geneontology.org/page/download-ontology", "title": "GO Taxon Groupings", "description": "Classes added to ncbitaxon for groupings such as prokaryotes", "ontology_purl": "http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl" }, { "id": "go/snapshot/go.owl", "page": "http://geneontology.org/page/download-ontology", "title": "GO (OWL edition), daily snapshot release", "description": "Equivalent to go.owl, but released daily. Note the snapshot release is not archived.", "ontology_purl": "http://purl.obolibrary.org/obo/go/snapshot/go.owl" }, { "id": "go/snapshot/go.obo", "page": "http://geneontology.org/page/download-ontology", "title": "GO (OBO Format edition), daily snapshot release", "description": "Equivalent to go.owl, but released daily. Note the snapshot release is not archived.", "ontology_purl": "http://purl.obolibrary.org/obo/go/snapshot/go.obo" } ], "taxon": { "id": "NCBITaxon:1", "label": "All life" }, "date_released": "2026-04-06T13:01:49.636285", "date_created": "2026-04-06T13:01:49.636288", "home_page": "http://geneontology.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 51937, "nb_individuals": 0, "nb_properties": 9, "max_depth": 14, "max_children": 13380, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "94116bf76c67164b02534e6250ee3910" } }, { "acronym": "MY_SYRIANCINEMA", "name": "MWS-WSM Syrian Cinema Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6561, "download_url": "media/ontologies/MY_SYRIANCINEMA/1/my_syriancinema.owl", "submission_id": 1, "domain": null, "description": "I have an anthology that describes Syrian cinema\r\nIt contains the film's class, the actor's class, the director's class, the producer's class, and other classes\r\nEach class has the necessary properties\r\nThere are several relationships between classes\r\n\r\nThe project is a practical assignment in the Semantic Web course for a graduate student in the Master of Web Science program", "documentation": "https://www.facebook.com/share/Lahi4gL4qiX647wW/?mibextid=qi2Omg", "publication": "https://www.facebook.com/share/Lahi4gL4qiX647wW/?mibextid=qi2Omg", "publications": null, "products": null, "taxon": null, "date_released": "2024-04-21T00:00:00", "date_created": "2024-04-21T17:55:11", "home_page": "https://www.facebook.com/share/Lahi4gL4qiX647wW/?mibextid=qi2Omg", "version": "4.3", "has_ontology_language": "OWL", "nb_classes": 7, "nb_individuals": 109, "nb_properties": 7, "max_depth": 3, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONS", "name": "Ontology for Nutritional Studies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7976, "download_url": "media/ontologies/ONS/29/ons.owl", "submission_id": 29, "domain": "diet, metabolomics, and nutrition", "description": "An ontology for description of concepts in the nutritional studies domain.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/29736190", "title": "ONS: an ontology for a standardized description of interventions and observational studies in nutrition" } ], "products": [ { "id": "ons.owl", "title": "ONS latest release", "ontology_purl": "http://purl.obolibrary.org/obo/ons.owl" } ], "taxon": null, "date_released": "2026-02-23T13:25:43.676557", "date_created": "2026-02-23T13:25:43.676566", "home_page": "https://github.com/enpadasi/Ontology-for-Nutritional-Studies", "version": null, "has_ontology_language": "OWL", "nb_classes": 4834, "nb_individuals": 69, "nb_properties": 76, "max_depth": 38, "max_children": 45, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "404fc29775cc11d8d91dc0dfc10d5ed6" } }, { "acronym": "ONTOSIM", "name": "The Ontology of Information System on Mortality", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 3865, "download_url": "media/ontologies/ONTOSIM/2/ontosim.owl", "submission_id": 2, "domain": null, "description": "[pt] A Ontologia do SIM foi desenvolvida no contexto do projeto DIASUS. Ela buscou resgatar a estrutura presente na ficha de preenchimento da Declaração de Óbito - DO, do Sistema de Informação de Mortalidade - SIM, do Sistema Único de Saúde, do Brasil.\r\n\r\n[en] The SIM Ontology was developed in the context of DIASUS project. This ontology intent to rescue the data structure presented in Death Certificate form, from Information System on Mortality - SIM, from Brazilian Public Health System - SUS.", "documentation": "https://gitlab.com/beliefchangetools/diasus/-/tree/master/OF_SIM", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-08-12T00:00:00", "date_created": "2020-08-12T23:18:01", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 14, "nb_individuals": 0, "nb_properties": 27, "max_depth": 2, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GML", "name": "Ontology for Geography Markup Language (GML3.0)", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 121, "download_url": "media/ontologies/GML/1/gml.owl", "submission_id": 1, "domain": null, "description": "The Geography Markup Language (GML) is an RDF encoding for the transport and storage of geographic information, including both the geometry and properties of geographic features. Vocabulary terms are declared using OWL language to support RDF applications.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-08-06T00:00:00", "date_created": "2017-08-06T13:45:36", "home_page": null, "version": "version 1.0", "has_ontology_language": "OWL", "nb_classes": 175, "nb_individuals": 23, "nb_properties": 124, "max_depth": 5, "max_children": 46, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ATC", "name": "Anatomical Therapeutic Chemical Classification", "status": "Classified", "topics": null, "species": null, "submission": { "id": 186, "download_url": "media/ontologies/ATC/6/atc.umls", "submission_id": 6, "domain": null, "description": "The Anatomical Therapeutic Chemical (ATC) Classification System is used for the classification of active ingredients of drugs according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. It is controlled by the World Health Organization Collaborating Centre for Drug Statistics Methodology (WHOCC), and was first published in 1976. ", "documentation": "http://en.wikipedia.org/wiki/Anatomical_Therapeutic_Chemical_Classification_System", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:36", "date_created": "2017-02-06T21:25:36", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 6135, "nb_individuals": 0, "nb_properties": 7, "max_depth": 4, "max_children": 31, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GO-EXT", "name": "Gene Ontology Extension", "status": "Classified", "topics": null, "species": null, "submission": { "id": 706, "download_url": "media/ontologies/GO-EXT/2/go-ext.obo", "submission_id": 2, "domain": null, "description": "Gene Ontology Extension", "documentation": "http://www.geneontology.org/GO.doc.shtml", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-06-24T07:00:00", "date_created": "2011-06-24T15:01:44", "home_page": "http://www.geneontology.org", "version": "2", "has_ontology_language": "OBO", "nb_classes": 35873, "nb_individuals": 0, "nb_properties": 6, "max_depth": 15, "max_children": 5313, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ATMO", "name": "African Traditional Medicine Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 659, "download_url": "media/ontologies/ATMO/3/atmo.obo", "submission_id": 3, "domain": null, "description": "African Traditional Medicine Ontology (ATMO) describes the actors' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom's roles and the disease consideration.", "documentation": null, "publication": "http://www.springerlink.com/content/p43l84263u166152/", "publications": null, "products": null, "taxon": null, "date_released": "2009-05-04T07:00:00", "date_created": "2016-07-27T19:21:50", "home_page": "http://www.eurecom.fr/~atemezin/", "version": "1.101", "has_ontology_language": "OBO", "nb_classes": 223, "nb_individuals": 0, "nb_properties": 1, "max_depth": 0, "max_children": 29, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOPBM", "name": "Ontology for Process-Based Modeling of Dynamical Systems (OntoPBM)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2459, "download_url": "media/ontologies/ONTOPBM/13/ontopbm.owl", "submission_id": 13, "domain": null, "description": "OntoPBM is an ontology of core entities for process-based modeling of dynamical systems. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-04-11T01:16:47", "date_created": "2019-04-11T01:16:48", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 178, "nb_individuals": 17, "nb_properties": 42, "max_depth": 10, "max_children": 22, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOPPS", "name": "Ontopps", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5713, "download_url": "media/ontologies/ONTOPPS/1/ontopps.owl", "submission_id": 1, "domain": null, "description": "A patient safety ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-03-05T00:00:00", "date_created": "2023-03-05T17:50:58", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 1130, "nb_individuals": 0, "nb_properties": 23, "max_depth": 6, "max_children": 44, "avg_children": 22, "classifiable": true, "nb_inconsistent": 26, "indexed": true, "md5sum": null } }, { "acronym": "ONTOREPLICOV", "name": "OntoRepliCov", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4434, "download_url": "media/ontologies/ONTOREPLICOV/1/ontoreplicov.owl", "submission_id": 1, "domain": null, "description": "OntoRepliCov is an ontology designed to describe the different stages of the SARS-CoV-2 replication process.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-21T00:00:00", "date_created": "2021-04-21T07:36:45", "home_page": null, "version": "0", "has_ontology_language": "OWL", "nb_classes": 85, "nb_individuals": 15, "nb_properties": 13, "max_depth": 4, "max_children": 22, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHASES", "name": "Promoting Health Aging through Semantic Enrichment of Solitude Research", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8006, "download_url": "media/ontologies/PHASES/3/phases.owl", "submission_id": 3, "domain": null, "description": "PHASES provides an ontology for integrating research in solitude and gerotranscendence. By integrating these areas of study, we aim to deepen our understanding of each and how they promote healthy aging.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-27T02:11:47", "date_created": "2026-02-26T00:00:00", "home_page": null, "version": "2026-02-25", "has_ontology_language": "OWL", "nb_classes": 85, "nb_individuals": 44, "nb_properties": 22, "max_depth": 10, "max_children": 12, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOAVIDA", "name": "OntoAvida: ontology for Avida digital evolution platform", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4965, "download_url": "media/ontologies/ONTOAVIDA/3/ontoavida.owl", "submission_id": 3, "domain": "simulation", "description": "OntoAvida develops an integrated vocabulary for the description of the most widely-used computational approach for studying evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ontoavida.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ontoavida.owl" }, { "id": "ontoavida.obo", "ontology_purl": "http://purl.obolibrary.org/obo/ontoavida.obo" } ], "taxon": null, "date_released": "2022-03-21T12:32:23.245402", "date_created": "2022-03-21T12:32:23.245416", "home_page": "https://gitlab.com/fortunalab/ontoavida", "version": null, "has_ontology_language": "OWL", "nb_classes": 675, "nb_individuals": 0, "nb_properties": 22, "max_depth": 4, "max_children": 512, "avg_children": 23, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "8f3cd2b5b6d520fd8f81d33edc237dc6" } }, { "acronym": "ATO", "name": "Amphibian Taxonomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 565, "download_url": "media/ontologies/ATO/2/ato.obo", "submission_id": 2, "domain": null, "description": "A taxonomy of Amphibia", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-02-26T08:00:00", "date_created": "2009-11-02T21:58:28", "home_page": "http://www.amphibanat.org", "version": "See Remote Site", "has_ontology_language": "OBO", "nb_classes": 6135, "nb_individuals": 73, "nb_properties": 1, "max_depth": 9, "max_children": 704, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "APOLLO-SV", "name": "Apollo Structured Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 889, "download_url": "media/ontologies/APOLLO-SV/21/apollo-sv.owl", "submission_id": 21, "domain": null, "description": "Apollo-SV, developed as an OWL specification, defines the terms and relations necessary for interoperation between epidemic simulators and public health application software that interface with these simulators.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-01T02:00:14", "date_created": "2017-12-01T02:00:14", "home_page": "https://github.com/ApolloDev/apollo-sv", "version": "v4.0.1", "has_ontology_language": "OWL", "nb_classes": 1523, "nb_individuals": 30, "nb_properties": 119, "max_depth": 37, "max_children": 42, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "G-O", "name": "Geriatrics Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 70, "download_url": "media/ontologies/G-O/1/g-o.owl", "submission_id": 1, "domain": null, "description": "The Ontology defines the Geriatrics system with classes. It also has object properties and data properties which are used to create a Decision support system for the elderly.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-01T00:00:00", "date_created": "2016-11-27T15:40:12", "home_page": "http://healthcareelderly.me/GeriatricsWebApp/web/ontoBrowser.html", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 296, "nb_individuals": 246, "nb_properties": 15, "max_depth": 7, "max_children": 149, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTODM-ALGORITHM", "name": "OntoDM-core/algorithms", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5332, "download_url": "media/ontologies/ONTODM-ALGORITHM/2/ontodm-algorithm.owl", "submission_id": 2, "domain": null, "description": "OntoDM-algorithms is an ontology for data mining and machine learning entities.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-06-06T00:00:00", "date_created": "2022-08-30T14:21:25", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 377, "nb_individuals": 0, "nb_properties": 1, "max_depth": 11, "max_children": 31, "avg_children": 19, "classifiable": true, "nb_inconsistent": 31, "indexed": true, "md5sum": null } }, { "acronym": "ONTODM-KDD", "name": "Ontology of Data Mining Investigations", "status": "Classified", "topics": null, "species": null, "submission": { "id": 61, "download_url": "media/ontologies/ONTODM-KDD/1/ontodm-kdd.owl", "submission_id": 1, "domain": null, "description": "OntoDM-KDD is an ontology for representing data mining investigations. Its goal is to allow the representation of knowledge discovery processes and be general enough to represent the data mining investigations. The ontology is based on the CRISP-DM process methodology.", "documentation": "www.ontodm.com", "publication": "www.ontodm.com", "publications": null, "products": null, "taxon": null, "date_released": "2012-06-06T07:00:00", "date_created": "2012-06-06T12:37:22", "home_page": "www.ontodm.com", "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 264, "nb_individuals": 0, "nb_properties": 34, "max_depth": 4, "max_children": 25, "avg_children": 5, "classifiable": true, "nb_inconsistent": 10, "indexed": true, "md5sum": null } }, { "acronym": "ONTOKBCF", "name": "Ontological Knowledge Base Model for Cystic Fibrosis", "status": "Classified", "topics": null, "species": null, "submission": { "id": 84, "download_url": "media/ontologies/ONTOKBCF/3/ontokbcf.owl", "submission_id": 3, "domain": null, "description": "OntoKBCF is an ontological knowledge base model for cystic fibrosis. There are molecular genetic information (i.e. gene mutations) and health information included in OntoKBCF. The purposes of OntoKBCF include management of molecular genetic information and health information and embedding OntoKBCF into EHR settings.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-01-14T08:00:00", "date_created": "2013-01-16T18:11:04", "home_page": null, "version": "1301", "has_ontology_language": "OWL", "nb_classes": 408, "nb_individuals": 0, "nb_properties": 35, "max_depth": 9, "max_children": 20, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GEXO", "name": "Gene Expression Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 217, "download_url": "media/ontologies/GEXO/2/gexo.owl", "submission_id": 2, "domain": null, "description": "An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, and orthology relations using ontological properties from RO and ISO.", "documentation": null, "publication": "http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-014-0386-y", "publications": null, "products": null, "taxon": null, "date_released": "2015-12-16T00:00:00", "date_created": "2015-12-16T08:29:35", "home_page": "http://www.semantic-systems-biology.org/apo", "version": "2015", "has_ontology_language": "OWL", "nb_classes": 166254, "nb_individuals": 157102, "nb_properties": 12, "max_depth": 21, "max_children": 50996, "avg_children": 49, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GFO", "name": "General Formal Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 226, "download_url": "media/ontologies/GFO/1/gfo.owl", "submission_id": 1, "domain": null, "description": "The General Formal Ontology (GFO) is a top-level ontology integrating objects and processes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2006-01-07T08:00:00", "date_created": "2010-03-02T19:23:37", "home_page": "http://www.onto-med.de/ontologies/gfo/", "version": "Version 1.0 ($Revision: 1.13 $)", "has_ontology_language": "OWL", "nb_classes": 45, "nb_individuals": 0, "nb_properties": 41, "max_depth": 5, "max_children": 6, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GFVO", "name": "Genomic Feature and Variation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 499, "download_url": "media/ontologies/GFVO/20/gfvo.owl", "submission_id": 20, "domain": null, "description": "The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). It is captures the contents of data files that adhere to the Generic Feature Format Version 3 (GFF3, http://www.sequenceontology.org/resources/gff3.html), the General Transfer Format (GTF, http://mblab.wustl.edu/GTF22.html), the Genome Variation Format Version 1 (GVF, http://www.sequenceontology.org/resources/gvf.html), and the Variant Call Format (VCF, http://vcftools.sourceforge.net/specs.html), as well as the FASTA format (http://en.wikipedia.org/wiki/FASTA_format). The creation of the ontology was inspired by previous work of Robert Hoehndorf on RDF2OWL (http://code.google.com/p/rdf2owl).\r\n\r\nNOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed. The full ontology is available at: http://www.biointerchange.org/gfvo", "documentation": "https://www.codamono.com/biointerchange/documentation/", "publication": "https://peerj.com/articles/933/", "publications": null, "products": null, "taxon": null, "date_released": "2015-07-14T00:00:00", "date_created": "2016-10-14T23:45:32", "home_page": "https://www.codamono.com/biointerchange/", "version": "1.0.6", "has_ontology_language": "OWL", "nb_classes": 102, "nb_individuals": 0, "nb_properties": 33, "max_depth": 6, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GLYCOCOO", "name": "GlycoConjugate Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1965, "download_url": "media/ontologies/GLYCOCOO/2/glycocoo.owl", "submission_id": 2, "domain": null, "description": "GlycoConjugate Ontology (GlycoCoO) as a standard semantic framework to describe and represent glycoconjugate data in RDF.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-10-27T01:03:59", "date_created": "2018-10-27T01:04:00", "home_page": "https://github.com/glycoinfo/GlycoCoO", "version": "1.1.3", "has_ontology_language": "OWL", "nb_classes": 51, "nb_individuals": 1, "nb_properties": 27, "max_depth": 3, "max_children": 29, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ABD", "name": "Anthology of Biosurveillance Diseases", "status": "Classified", "topics": null, "species": null, "submission": { "id": 505, "download_url": "media/ontologies/ABD/4/abd.owl", "submission_id": 4, "domain": null, "description": "Our disease ontology provides information on infectious diseases, disease synonyms, transmission pathways, disease agents, affected populations and disease properties. Diseases have been grouped into syndromic disease categories, such that programmers can look through relevant categories, as well as at specific diseases. Organisms, linked to both agents and populations, are structured hierarchically, to provide multiple levels of organism resolution. In addition, both disease transmission and relevant disease properties are available to search. Disease properties include tags like 'notifiable diseases' and 'economic importance' to flag particular disease characteristics that may be of interest, but are not captured elsewhere.", "documentation": "http://brd.bsvgateway.org/api", "publication": "http://brd.bsvgateway.org/reference", "publications": null, "products": null, "taxon": null, "date_released": "2016-09-14T01:00:04", "date_created": "2016-09-14T01:00:04", "home_page": "http://brd.bsvgateway.org/disease", "version": null, "has_ontology_language": "OWL", "nb_classes": 1445, "nb_individuals": 0, "nb_properties": 3, "max_depth": 3, "max_children": 758, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HINO", "name": "Human Interaction Network Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 367, "download_url": "media/ontologies/HINO/6/hino.owl", "submission_id": 6, "domain": null, "description": "The Human Interaction Network Ontology (HINO) is an INO extension for the domain of human interaction networks. It has currently incoporated Reactome reactions and pathways. Like INO, HINO aligns with BFO. HINO is developed by following the OBO Foundry principles. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-06-27T19:32:47", "date_created": "2014-06-27T19:32:47", "home_page": "http://www.ino-ontology.org/", "version": "Vision Release: 1.0.69", "has_ontology_language": "OWL", "nb_classes": 37777, "nb_individuals": 1, "nb_properties": 71, "max_depth": 27, "max_children": 8962, "avg_children": 30, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AO", "name": "Asthma Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 288, "download_url": "media/ontologies/AO/2/ao.owl", "submission_id": 2, "domain": null, "description": "Asthma ontology", "documentation": "www.clininf.eu", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-03-02T00:00:00", "date_created": "2017-02-23T22:21:58", "home_page": "www.clininf.eu", "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 289, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 30, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GO-PLUS", "name": "go-plus", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 938, "download_url": "media/ontologies/GO-PLUS/467/go-plus.owl", "submission_id": 467, "domain": null, "description": null, "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-08T02:04:10", "date_created": "2017-12-08T02:04:10", "home_page": "http://geneontology.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 62137, "nb_individuals": 0, "nb_properties": 292, "max_depth": 37, "max_children": 4372, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "goslim_candida", "name": "Candida albicans slim", "status": "Classified", "topics": null, "species": null, "submission": { "id": 719, "download_url": "media/ontologies/goslim_candida/1/goslim_candida.obo", "submission_id": 1, "domain": null, "description": "Developed by Candida Genome Database (). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-09-22T07:00:00", "date_created": "2009-09-27T17:46:03", "home_page": null, "version": "1.6 (CVS revision)", "has_ontology_language": "OBO", "nb_classes": 114, "nb_individuals": 0, "nb_properties": 5, "max_depth": 3, "max_children": 31, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOTOX", "name": "Chemotherapy Toxicities Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4612, "download_url": "media/ontologies/ONTOTOX/1/ontotox.owl", "submission_id": 1, "domain": null, "description": "OntoTox is an ontology designed to represent chemotherapy toxicities extracted from various data in Clinical Data Warehouses. OntoTox can integrate toxicities and grading information extracted from heterogeneous sources.\r\nExamples of OntoTox instantiations can be found in GitHub : https://github.com/TeamHeka/OntoTox\r\n", "documentation": "https://github.com/TeamHeka/OntoTox", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-08T00:00:00", "date_created": "2021-09-08T18:19:30", "home_page": "https://github.com/TeamHeka/OntoTox", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 16, "nb_individuals": 0, "nb_properties": 6, "max_depth": 2, "max_children": 7, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOTOXNUC", "name": "Ontology of Nuclear Toxicity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 165, "download_url": "media/ontologies/ONTOTOXNUC/2/ontotoxnuc.owl", "submission_id": 2, "domain": null, "description": "Ontology of nuclear toxicity developed during ToxNuc project <>.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-09-17T00:00:00", "date_created": "2015-03-10T18:34:02", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 650, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 39, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OOEVV", "name": "Ontology of Experimental Variables and Values", "status": "Classified", "topics": null, "species": null, "submission": { "id": 698, "download_url": "media/ontologies/OOEVV/4/ooevv.owl", "submission_id": 4, "domain": null, "description": "The ontology of experimental variables and values provides a lightweight representation of (a) the variables used to measure experimental properties and (b) the measurement scales that form the complex data types supporting that data. Many different variables measure the same thing, here we use a lightweight representation driven by a small number of classes and a large number of variables to focus only on providing a vocabulary of variables that may be extended for consolidation to standardized variables for specific things and functions to map between values from different measurements scales. We use the base ontology description to provide a very lightweight representation of the basic elements of an experimental design and we use views to instantiate it for specific domains. ", "documentation": "http://www.isi.edu/projects/ooevv/overview", "publication": "http://www.isi.edu/research_groups/bmkeg/publications", "publications": null, "products": null, "taxon": null, "date_released": "2012-04-29T07:00:00", "date_created": "2012-07-19T05:55:02", "home_page": "http://bmkeg.isi.edu", "version": "0.0.4", "has_ontology_language": "OWL", "nb_classes": 47, "nb_individuals": 18, "nb_properties": 50, "max_depth": 4, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GVO", "name": "Genome Variation Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5349, "download_url": "media/ontologies/GVO/3/gvo.owl", "submission_id": 3, "domain": null, "description": "The Genome Variation Ontology (GVO) is an ontology for the systematic description of various genomic variations, including complex structural variations in genomes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-08T00:00:00", "date_created": "2022-09-09T00:52:14", "home_page": "http://genome-variation.org/resource/gvo", "version": "2022-09-09", "has_ontology_language": "OWL", "nb_classes": 77, "nb_individuals": 99, "nb_properties": 17, "max_depth": 4, "max_children": 19, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ooevv-tractTrace", "name": "OoEVV tract tracing experiments ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 416, "download_url": "media/ontologies/ooevv-tractTrace/1/ooevv-tracttrace.owl", "submission_id": 1, "domain": null, "description": "This serves as an instantiation of the OoEVV ontology design pattern for variables derived from models of neuroanatomical tract-tracing experiments described in detail in Russ et al. 2011 (http://www.biomedcentral.com/1471-2105/12/351). This serves as a well-developed example system for development of the KEfED formulation. ", "documentation": "http://www.isi.edu/projects/ooevv/overview", "publication": "http://www.isi.edu/research_groups/bmkeg/publications", "publications": null, "products": null, "taxon": null, "date_released": "2012-07-18T07:00:00", "date_created": "2012-07-19T06:02:27", "home_page": "http://bmkeg.isi.edu", "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 47, "nb_individuals": 65, "nb_properties": 50, "max_depth": 4, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HPIO", "name": "Host Pathogen Interactions Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 770, "download_url": "media/ontologies/HPIO/2/hpio.owl", "submission_id": 2, "domain": null, "description": "Ontology for host pathogen interactions in farmed animals", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-01-25T08:00:00", "date_created": "2011-02-08T20:29:10", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 275, "nb_individuals": 0, "nb_properties": 6, "max_depth": 10, "max_children": 20, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SCIO", "name": "Spinal Cord Injury Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 672, "download_url": "media/ontologies/SCIO/2/scio.owl", "submission_id": 2, "domain": null, "description": "Representation of pre-clinical studies in the domain of spinal cord injury therapies", "documentation": "http://www.psink.de", "publication": "https://pub.uni-bielefeld.de/publication/2913603", "publications": null, "products": null, "taxon": null, "date_released": "2017-09-19T00:00:00", "date_created": "2017-09-20T14:29:51", "home_page": "http://www.psink.de", "version": "1", "has_ontology_language": "OWL", "nb_classes": 526, "nb_individuals": 1788, "nb_properties": 210, "max_depth": 8, "max_children": 41, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ooevv-vaccine", "name": "OoEVV vaccine protection experiments ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 140, "download_url": "media/ontologies/ooevv-vaccine/1/ooevv-vaccine.owl", "submission_id": 1, "domain": null, "description": "This serves as an instantiation of the OoEVV ontology design pattern for variables derived from vaccine protection studies that have been previously indexed in the Los Alamos National Laboratories (LANL) HIV Vaccine Trials Database. This is a comprehensive index of research outcomes derived from vaccine studies in nonhuman primates and provides an excellent index of papers for examination with our approach. ", "documentation": "http://www.isi.edu/projects/ooevv/overview", "publication": "http://www.isi.edu/research_groups/bmkeg/publications", "publications": null, "products": null, "taxon": null, "date_released": "2012-07-18T07:00:00", "date_created": "2012-07-19T06:12:07", "home_page": "http://bmkeg.isi.edu", "version": "0.0.4", "has_ontology_language": "OWL", "nb_classes": 48, "nb_individuals": 168, "nb_properties": 50, "max_depth": 4, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "REPRODUCE-ME", "name": "REPRODUCE-ME", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 2725, "download_url": "media/ontologies/REPRODUCE-ME/7/reproduce-me.owl", "submission_id": 7, "domain": null, "description": "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials and settings required for its reproducibility. ", "documentation": "https://w3id.org/reproduceme", "publication": "https://w3id.org/reproduceme/research", "publications": null, "products": null, "taxon": null, "date_released": "2019-01-14T00:00:00", "date_created": "2019-07-08T14:20:25", "home_page": "https://w3id.org/reproduceme/research", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 347, "nb_individuals": 255, "nb_properties": 71, "max_depth": 6, "max_children": 34, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OPTION-ONTOLOGY", "name": "Optimization Algorithm Benchmarking Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5531, "download_url": "media/ontologies/OPTION-ONTOLOGY/3/option-ontology.owl", "submission_id": 3, "domain": null, "description": "OPTImization Algorithm Benchmarking ONtology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-12T00:00:00", "date_created": "2022-11-30T16:00:18", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 347, "nb_individuals": 28, "nb_properties": 59, "max_depth": 11, "max_children": 36, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OOSTT", "name": "Ontology of Organizational Structures of Trauma centers and Trauma systems", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7567, "download_url": "media/ontologies/OOSTT/16/oostt.owl", "submission_id": 16, "domain": "health", "description": "An ontology built for representating the organizational components of trauma centers and trauma systems.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "oostt.owl", "ontology_purl": "http://purl.obolibrary.org/obo/oostt.owl" } ], "taxon": null, "date_released": "2025-09-01T12:33:53.005034", "date_created": "2025-09-01T12:33:53.005037", "home_page": "https://github.com/OOSTT/OOSTT", "version": null, "has_ontology_language": "OWL", "nb_classes": 831, "nb_individuals": 22, "nb_properties": 80, "max_depth": 13, "max_children": 70, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7729e009e53255bf32450c8cf6c1087a" } }, { "acronym": "OPB", "name": "Ontology of Physics for Biology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 127, "download_url": "media/ontologies/OPB/13/opb.owl", "submission_id": 13, "domain": null, "description": "The OPB is a reference ontology of classical physics and thermodynamics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.", "documentation": null, "publication": "http://dx.plos.org/10.1371/journal.pone.0028708", "publications": null, "products": null, "taxon": null, "date_released": "2015-02-18T00:00:00", "date_created": "2017-09-05T14:33:34", "home_page": "https://sites.google.com/site/semanticsofbiologicalprocesses/projects/the-ontology-of-physics-for-biology-opb", "version": "1.05", "has_ontology_language": "OWL", "nb_classes": 861, "nb_individuals": 0, "nb_properties": 66, "max_depth": 13, "max_children": 18, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OPDE", "name": "OPD-Ethiopia", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4579, "download_url": "media/ontologies/OPDE/1/opde.skos", "submission_id": 1, "domain": null, "description": "This is an OPD Registry Form in Ethiopia.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-02T00:00:00", "date_created": "2021-06-02T12:31:18", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 59, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OPDZIMBABWE", "name": "OPDZimbabwe", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4873, "download_url": "media/ontologies/OPDZIMBABWE/1/opdzimbabwe.skos", "submission_id": 1, "domain": null, "description": "OPD Terms that are used in Zimbabwe.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-01-29T00:00:00", "date_created": "2022-01-30T06:49:45", "home_page": null, "version": "1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 4, "nb_properties": 3, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OPL", "name": "Ontology for Parasite LifeCycle", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6043, "download_url": "media/ontologies/OPL/12/opl.owl", "submission_id": 12, "domain": "organisms", "description": "A reference ontology for parasite life cycle stages.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "opl.owl", "ontology_purl": "http://purl.obolibrary.org/obo/opl.owl" } ], "taxon": null, "date_released": "2023-09-04T13:39:08.625827", "date_created": "2023-09-04T13:39:08.625834", "home_page": "https://github.com/OPL-ontology/OPL", "version": null, "has_ontology_language": "OWL", "nb_classes": 561, "nb_individuals": 20, "nb_properties": 37, "max_depth": 11, "max_children": 49, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "12206813a5635b8c5aac633e3b8c860f" } }, { "acronym": "OPMI", "name": "Ontology of Precision Medicine and Investigation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6461, "download_url": "media/ontologies/OPMI/29/opmi.owl", "submission_id": 29, "domain": "investigations", "description": "The Ontology of Precision Medicine and Investigation (OPMI) aims to ontologically represent and standardize various entities and relations associated with precision medicine and related investigations at different conditions.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "opmi.owl", "ontology_purl": "http://purl.obolibrary.org/obo/opmi.owl" } ], "taxon": null, "date_released": "2024-03-18T12:41:57.647702", "date_created": "2024-03-18T12:41:57.647705", "home_page": "https://github.com/OPMI/opmi", "version": null, "has_ontology_language": "OWL", "nb_classes": 3153, "nb_individuals": 36, "nb_properties": 157, "max_depth": 39, "max_children": 171, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "875ac5e005ccfdece24c426d33db04ae" } }, { "acronym": "OPTION", "name": "OPTImization Algorithm Benchmarking ONtology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4235, "download_url": "media/ontologies/OPTION/1/option.owl", "submission_id": 1, "domain": null, "description": "OPTION:OPTImization Algorithm Benchmarking ONtology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-01-30T00:00:00", "date_created": "2021-01-30T16:27:58", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 286, "nb_individuals": 23, "nb_properties": 58, "max_depth": 11, "max_children": 36, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_CS", "name": "ORDO Czech", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7824, "download_url": "media/ontologies/ORDO_CS/9/ordo_cs.owl", "submission_id": 9, "domain": null, "description": "This ontology is the czech version of ORDO with definition, labels and synonyms in czech.", "documentation": "https://www.orphadata.com/ordo/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-20T12:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "4.8", "has_ontology_language": "OWL", "nb_classes": 16036, "nb_individuals": 0, "nb_properties": 13, "max_depth": 11, "max_children": 4477, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PCALION", "name": "Prostate Cancer Lifestyle Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4031, "download_url": "media/ontologies/PCALION/6/pcalion.owl", "submission_id": 6, "domain": null, "description": "PCLiON:Prostate Cancer Lifestyle Ontology", "documentation": "http://pcaontology.net/PCaLifeStyleDefault.aspx", "publication": "http://pcaontology.net/PCaLifeStyleDefault.aspx", "publications": null, "products": null, "taxon": null, "date_released": "2020-10-28T00:00:00", "date_created": "2020-10-29T07:56:09", "home_page": "http://pcaontology.net/PCaLifeStyleDefault.aspx", "version": "3.0", "has_ontology_language": "OWL", "nb_classes": 397, "nb_individuals": 54, "nb_properties": 18, "max_depth": 9, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PCAO", "name": "Prostate Cancer Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5874, "download_url": "media/ontologies/PCAO/2/pcao.owl", "submission_id": 2, "domain": null, "description": "Here, we introduce the Prostate cancer ontology (PCaO) as a comprehensive semantic framework covering the whole breadth of the PCa’s knowledge domain. This ontology with a subclass-based taxonomic hierarchy not only covers the broad spectrum of major biomedical concepts from molecular to clinical features of the disease, but also the different views on disease features held by molecular biologists, clinicians and drug developers. PCaO organized under three biological viewpoints, i.e., epidemiology, diagnosis, and treatment.", "documentation": "http://pcaontology.net", "publication": "http://pcaontology.net", "publications": null, "products": null, "taxon": null, "date_released": "2023-06-07T00:00:00", "date_created": "2023-06-07T02:33:07", "home_page": "http://pcaontology.net", "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 633, "nb_individuals": 0, "nb_properties": 33, "max_depth": 8, "max_children": 53, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PCL", "name": "Provisional Cell Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7479, "download_url": "media/ontologies/PCL/28/pcl.owl", "submission_id": 28, "domain": "phenotype", "description": "Cell types that are provisionally defined by experimental techniques such as single cell or single nucleus transcriptomics rather than a straightforward & coherent set of properties.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "pcl.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pcl.owl" }, { "id": "pcl.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pcl.obo" }, { "id": "pcl.json", "ontology_purl": "http://purl.obolibrary.org/obo/pcl.json" }, { "id": "pcl-base.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-base.owl" }, { "id": "pcl-base.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-base.obo" }, { "id": "pcl-base.json", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-base.json" }, { "id": "pcl-full.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-full.owl" }, { "id": "pcl-full.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-full.obo" }, { "id": "pcl-full.json", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-full.json" }, { "id": "pcl-simple.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-simple.owl" }, { "id": "pcl-simple.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-simple.obo" }, { "id": "pcl-simple.json", "ontology_purl": "http://purl.obolibrary.org/obo/pcl-simple.json" } ], "taxon": null, "date_released": "2025-07-14T12:34:22.671460", "date_created": "2025-07-14T12:34:22.671466", "home_page": "https://github.com/obophenotype/provisional_cell_ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 37211, "nb_individuals": 9213, "nb_properties": 263, "max_depth": 32, "max_children": 14232, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7f0c96462f00115510b8f4d59d4ba7ae" } }, { "acronym": "PDRO", "name": "The Prescription of Drugs Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4549, "download_url": "media/ontologies/PDRO/8/pdro.owl", "submission_id": 8, "domain": "health", "description": "An ontology to describe entities related to prescription of drugs", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "pdro.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pdro.owl" } ], "taxon": null, "date_released": "2021-10-25T16:01:21.663643", "date_created": "2021-10-25T16:01:21.663770", "home_page": "https://github.com/OpenLHS/PDRO", "version": null, "has_ontology_language": "OWL", "nb_classes": 310, "nb_individuals": 0, "nb_properties": 38, "max_depth": 9, "max_children": 23, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "bbd5adc44cb838db34d5ea5ab6a0cd3f" } }, { "acronym": "PDUMDV", "name": "Platynereis Developmental Stages", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6547, "download_url": "media/ontologies/PDUMDV/10/pdumdv.owl", "submission_id": 10, "domain": "anatomy and development", "description": "Life cycle stages for Platynereis dumerilii", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "pdumdv.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pdumdv.owl" }, { "id": "pdumdv.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pdumdv.obo" } ], "taxon": null, "date_released": "2024-04-15T13:14:48.456578", "date_created": "2024-04-15T13:14:48.456582", "home_page": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv", "version": null, "has_ontology_language": "OWL", "nb_classes": 21, "nb_individuals": 0, "nb_properties": 3, "max_depth": 2, "max_children": 20, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "2418dd126798c6d3932854028e676afa" } }, { "acronym": "PE", "name": "Pulmonary Embolism Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 225, "download_url": "media/ontologies/PE/1/pe.owl", "submission_id": 1, "domain": null, "description": "A controlled vocabulary of PE-relevant information. Currently, only treatment information is available. ", "documentation": null, "publication": "http://www.sciencedirect.com/science/article/pii/S0933365716300689", "publications": null, "products": null, "taxon": null, "date_released": "2015-12-08T00:00:00", "date_created": "2015-12-08T14:54:20", "home_page": null, "version": "version 1.0", "has_ontology_language": "OWL", "nb_classes": 97, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 61, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PEAO", "name": "Plant Experimental Assay Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 290, "download_url": "media/ontologies/PEAO/1/peao.owl", "submission_id": 1, "domain": null, "description": "The Plant domain has been the subject of several attempts to structure and formally define terms and corresponding relations, such as their anatomical features, developmental stages, and the application of particular experimental procedures to a biological problem. However, a focus on experimental assays in order to describe the whole experimental procedure, to the best of our knowledge, has only been attempted in the context of a very general description based on classical views of the scientific method. In this study, we focus on the development and proposal of an ontology dedicated to the description of these experimental procedures, regardless of the scientific questions that prompted the assays. This ontology includes entities from three distinct realms (biological, physical and data), which include both experimental products, their relations and the protocols describing their manipulation. The final outcome is a useful and comprehensive ontology in the plant domain, to be used as a log book by experimentalists, providing a formal relation between entities.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-12-17T00:00:00", "date_created": "2014-12-17T15:10:11", "home_page": "https://bitbucket.org/PlantExpAssay/ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 2298, "nb_individuals": 1, "nb_properties": 74, "max_depth": 9, "max_children": 75, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PMR", "name": "Physical Medicine and Rehabilitation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 193, "download_url": "media/ontologies/PMR/4/pmr.owl", "submission_id": 4, "domain": null, "description": "Knowledge representation related to computer-based decision support in rehabilitation; concepts and relationships in the rehabilitation domain, integrating clinical practice, the ICD (specifically its 11th revision), the clinical investigator record ontology, the ICF and SNOMED CT.", "documentation": "https://www.researchgate.net/publication/235248247_Interoperable_Knowledge_Representation_In_Clinical_Decision_Support_Systems_for_Rehabilitation", "publication": "https://sites.google.com/site/laiasubirats/publications", "publications": null, "products": null, "taxon": null, "date_released": "2012-03-06T08:00:00", "date_created": "2017-07-15T14:10:09", "home_page": "https://sites.google.com/site/laiasubirats", "version": "1.6", "has_ontology_language": "OWL", "nb_classes": 1597, "nb_individuals": 945, "nb_properties": 52, "max_depth": 15, "max_children": 293, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PREFER", "name": "Precision Fermentation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8042, "download_url": "media/ontologies/PREFER/3/prefer.owl", "submission_id": 3, "domain": null, "description": "PREFER is an ontology designed to integrate high-throughput bioprocess data, covering operational, environmental and process parameters across different scales of a precision fermentation process, to accelerate the development and scaling of biosustainable production processes., An ontology for PREcision FERmentation.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-11T02:48:17", "date_created": "2026-03-10T00:00:00", "home_page": null, "version": "2026-03-10", "has_ontology_language": "OWL", "nb_classes": 367, "nb_individuals": 235, "nb_properties": 65, "max_depth": 9, "max_children": 33, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "AURA", "name": "KB_Bio_101", "status": "Classified", "topics": null, "species": null, "submission": { "id": 58, "download_url": "media/ontologies/AURA/1/aura.owl", "submission_id": 1, "domain": null, "description": "KB_Bio_101 is the ontology of the AURA + Inquire project @ SRI International, Menlo Park. \r\n\r\nThis work is owned by Vulcan Inc. and is licensed for use under the Creative Commons Attribution-NonCommerical-ShareAlike 3.0 license (http://creativecommons.org/licenses/by-nc-sa/3.0/). Vulcan Inc., June 2013", "documentation": "http://www.ai.sri.com/~halo/public/exported-kb/export-doc.pdf", "publication": "http://www.ai.sri.com/software/AURA", "publications": null, "products": null, "taxon": null, "date_released": "2014-01-21T00:00:00", "date_created": "2014-01-21T19:51:39", "home_page": "http://www.ai.sri.com/people/chaudhri", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 27396, "nb_individuals": 634, "nb_properties": 358, "max_depth": 23, "max_children": 21058, "avg_children": 15, "classifiable": true, "nb_inconsistent": 1, "indexed": true, "md5sum": null } }, { "acronym": "FLOPO", "name": "Flora Phenotype Ontology", "status": "Classified", "topics": [], "species": [], "submission": { "id": 2901, "download_url": "media/ontologies/FLOPO/10/flopo.owl", "submission_id": 10, "domain": "phenotype", "description": "Traits and phenotypes of flowering plants occurring in digitized Floras", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "flopo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/flopo.owl" } ], "taxon": { "id": "NCBITaxon:33090", "label": "Viridiplantae" }, "date_released": "2019-09-09T12:20:11.778238", "date_created": "2019-09-09T12:20:11.778262", "home_page": "https://github.com/flora-phenotype-ontology/flopoontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 28971, "nb_individuals": 0, "nb_properties": 135, "max_depth": 11, "max_children": 2289, "avg_children": 69, "classifiable": true, "nb_inconsistent": 107, "indexed": true, "md5sum": "b93ed5e841a68be02c4f5ef40d923fd2" } }, { "acronym": "iceci-mechanism", "name": "iceci-mechanism", "status": "Classified", "topics": null, "species": null, "submission": { "id": 213, "download_url": "media/ontologies/iceci-mechanism/2/iceci-mechanism.owl", "submission_id": 2, "domain": null, "description": "ICECI Mechanism of injury-full version C2", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T21:09:44", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 233, "nb_individuals": 230, "nb_properties": 7, "max_depth": 4, "max_children": 11, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PMD", "name": "Persian Medicine Diseases Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2702, "download_url": "media/ontologies/PMD/1/pmd.owl", "submission_id": 1, "domain": null, "description": "PMD is an ontology that represents classification and related information of Persian medicine diseases. Persian medicine also known as Iranian traditional medicine is one of famous and most ancient forms of traditional medicines. This ontology is based on the top-level ontology GFO (General Formal Ontology)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-06-24T00:00:00", "date_created": "2019-06-24T22:00:53", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 529, "nb_individuals": 0, "nb_properties": 41, "max_depth": 7, "max_children": 62, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PYRAMIDAL2H", "name": "NeuroMorpho.Org Pyramidal cell gross connectivity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 342, "download_url": "media/ontologies/PYRAMIDAL2H/2/pyramidal2h.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of Pyramidal cell gross connectivity projecting to different cortico-cortical or cortico-subcortical regions.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:50:14", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 3, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "APOLLO_SV", "name": "Apollo Structured Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8023, "download_url": "media/ontologies/APOLLO_SV/27/apollo_sv.owl", "submission_id": 27, "domain": "health", "description": "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1186/s13326-016-0092-y", "title": "The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation" } ], "products": [ { "id": "apollo_sv.owl", "ontology_purl": "http://purl.obolibrary.org/obo/apollo_sv.owl" } ], "taxon": null, "date_released": "2026-03-16T12:01:08.618361", "date_created": "2026-03-16T12:01:08.618364", "home_page": "https://github.com/ApolloDev/apollo-sv", "version": null, "has_ontology_language": "OWL", "nb_classes": 1718, "nb_individuals": 27, "nb_properties": 227, "max_depth": 37, "max_children": 39, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "010ba852ab5397254c3a27ee80ea23c9" } }, { "acronym": "iceci-substance_use", "name": "iceci-substance_use", "status": "Classified", "topics": null, "species": null, "submission": { "id": 161, "download_url": "media/ontologies/iceci-substance_use/2/iceci-substance_use.owl", "submission_id": 2, "domain": null, "description": "ICECI Substance use\t C6 and C7", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-07T07:00:00", "date_created": "2010-05-07T21:17:27", "home_page": null, "version": "1.02", "has_ontology_language": "OWL", "nb_classes": 16, "nb_individuals": 13, "nb_properties": 7, "max_depth": 2, "max_children": 5, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_PL", "name": "ORDO POLISH", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7830, "download_url": "media/ontologies/ORDO_PL/14/ordo_pl.owl", "submission_id": 14, "domain": null, "description": "This ontology is the polish version of ORDO with definition, labels and synonyms in polish.", "documentation": "https://www.orphadata.com/ordo/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-20T12:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "4.8", "has_ontology_language": "OWL", "nb_classes": 16036, "nb_individuals": 0, "nb_properties": 13, "max_depth": 11, "max_children": 4477, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GEOSPARQL", "name": "GeoSPARQL", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 941, "download_url": "media/ontologies/GEOSPARQL/1/geosparql.owl", "submission_id": 1, "domain": null, "description": "The OGC GeoSPARQL standard supports representing and querying geospatial data on the Semantic Web. GeoSPARQL defines a vocabulary for representing geospatial data in RDF, and it defines an extension to the SPARQL query language for processing geospatial data. In addition, GeoSPARQL is designed to accommodate systems based on qualitative spatial reasoning and systems based on quantitative spatial computations.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-09T00:00:00", "date_created": "2017-12-09T22:43:17", "home_page": null, "version": "OGC GeoSPARQL 1.0", "has_ontology_language": "OWL", "nb_classes": 78, "nb_individuals": 0, "nb_properties": 43, "max_depth": 9, "max_children": 8, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_PT", "name": "ORDO Portuguese", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7831, "download_url": "media/ontologies/ORDO_PT/10/ordo_pt.owl", "submission_id": 10, "domain": null, "description": "This ontology is the portuguese version of ORDO with definition, labels and synonyms in portuguese.", "documentation": "https://www.orphadata.com/ordo/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-20T12:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "4.8", "has_ontology_language": "OWL", "nb_classes": 16036, "nb_individuals": 0, "nb_properties": 13, "max_depth": 11, "max_children": 4477, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "O-REXTECH", "name": "OSIRIS-REx Analytical Technique", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5354, "download_url": "media/ontologies/O-REXTECH/2/o-rextech.skos", "submission_id": 2, "domain": null, "description": "second draft, M4M workshop, testing SKOS-Play and workflows. Add top concepts and more hierarchy.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-08T00:00:00", "date_created": "2022-09-08T23:27:27", "home_page": null, "version": "0.0.2", "has_ontology_language": "SKOS", "nb_classes": 5, "nb_individuals": 56, "nb_properties": 17, "max_depth": 2, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GLYCO", "name": "Glycomics Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 122, "download_url": "media/ontologies/GLYCO/1/glyco.owl", "submission_id": 1, "domain": null, "description": "The GlycO ontology provides an up-to-date knowledge base of experimentally verified glycan structures. Glycan (oligosaccharide or polysaccharide) structures are represented as trees of monosaccharide residues. Linkage to proteins and lipids is supported as well. Insertion of a new glycan is controlled by curation process that includes matching the new glycan against a canonical glyco-tree (a highly branched representation for a family of glycans).", "documentation": "http://glycomics.ccrc.uga.edu/core4/informatics-ontologies.html", "publication": "http://glycomics.ccrc.uga.edu/core4/informatics-ontologies.html", "publications": null, "products": null, "taxon": null, "date_released": "2012-10-29T07:00:00", "date_created": "2012-10-29T12:31:37", "home_page": "http://glycomics.ccrc.uga.edu/core4/informatics-ontologies.html", "version": "4.6.0.0", "has_ontology_language": "OWL", "nb_classes": 230, "nb_individuals": 1784, "nb_properties": 65, "max_depth": 8, "max_children": 11, "avg_children": 3, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "GFO-BIO", "name": "General Formal Ontology for Biology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 59, "download_url": "media/ontologies/GFO-BIO/1/gfo-bio.owl", "submission_id": 1, "domain": null, "description": "GFO-Bio is a biological core ontology built on the General Formal Ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-07-12T07:00:00", "date_created": "2010-03-02T19:27:14", "home_page": "http://www.onto-med.de/ontologies/gfo-bio/", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 168, "nb_individuals": 1, "nb_properties": 73, "max_depth": 11, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OREX-SAM", "name": "OSIRIS-REx sample type", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5347, "download_url": "media/ontologies/OREX-SAM/1/orex-sam.skos", "submission_id": 1, "domain": null, "description": "Sample types from JSC-SAMIS Interface Control Document. Edited by S.M. Richard. These sample types are limited to those expected from the OSIRIS-REx sample return, this is not an exhaustive sample type categorization.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-08T00:00:00", "date_created": "2022-09-08T23:31:32", "home_page": null, "version": "0.2.0", "has_ontology_language": "SKOS", "nb_classes": 5, "nb_individuals": 25, "nb_properties": 17, "max_depth": 2, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OREX-WG", "name": "OSIRIS-REx sample analysis workgroups", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5351, "download_url": "media/ontologies/OREX-WG/1/orex-wg.skos", "submission_id": 1, "domain": null, "description": "Workgroups organized to analyzed samples returned by OSIRIS-REx mission from asteroid Bennu. Mostly for reference in other metadata records.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-08T00:00:00", "date_created": "2022-09-08T23:34:07", "home_page": null, "version": "0.1.0", "has_ontology_language": "SKOS", "nb_classes": 5, "nb_individuals": 9, "nb_properties": 17, "max_depth": 2, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORNASEQ", "name": "Ontology of RNA Sequencing", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2850, "download_url": "media/ontologies/ORNASEQ/2/ornaseq.owl", "submission_id": 2, "domain": "experiments", "description": "An application ontology designed to annotate next-generation sequencing experiments performed on RNA.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ornaseq.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ornaseq.owl" } ], "taxon": null, "date_released": "2019-08-19T15:41:30.373552", "date_created": "2019-08-19T15:41:30.373607", "home_page": "http://kim.bio.upenn.edu/software/ornaseq.shtml", "version": null, "has_ontology_language": "OWL", "nb_classes": 164, "nb_individuals": 1, "nb_properties": 8, "max_depth": 11, "max_children": 14, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "e446b1a4c5dbaffa7e9763585dc1327f" } }, { "acronym": "ORON", "name": "Ontology for Reporting of Observational studies in Nutrition", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1723, "download_url": "media/ontologies/ORON/2/oron.owl", "submission_id": 2, "domain": null, "description": "Currently, ontology for representing observational study manuscript is still missing. This ontology is developed as a representation ontology based on STROBE-nut reporting guideline.\r\n1) Manuscript items are developed as classes;\r\n2) STROBE-nut recommendations are developed as datatype properties.", "documentation": null, "publication": "http://www.strobe-nut.org/", "publications": null, "products": null, "taxon": null, "date_released": "2018-08-01T00:00:00", "date_created": "2018-08-01T13:19:23", "home_page": "https://github.com/cyang0128/Nutritional-epidemiological-ontologies", "version": "V1.0", "has_ontology_language": "OWL", "nb_classes": 30, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 9, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OSM", "name": "Ontologia de Saúde Mental", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2747, "download_url": "media/ontologies/OSM/1/osm.owl", "submission_id": 1, "domain": null, "description": "Esta ontologia foi desenvolvida para auxiliar na gestão da Rede de Atenção Psicossocial no contexto brasileiro, a fim de possibilitar a criação de ferramentas computacionais inteligentes, permitindo a integração e interoperabilidade entre bases de dados independentes e possibilitando a geração de indicadores para a saúde mental, visando melhorar a tomada de decisão, o planejamento e a eficiência e eficácia dos serviços prestados à comunidade.", "documentation": null, "publication": "https://www.sciencedirect.com/science/article/pii/S187705091831651X", "publications": null, "products": null, "taxon": null, "date_released": "2019-07-11T00:00:00", "date_created": "2019-07-11T14:11:12", "home_page": "https://saudeconectada.org/", "version": "1", "has_ontology_language": "OWL", "nb_classes": 280, "nb_individuals": 21, "nb_properties": 68, "max_depth": 7, "max_children": 19, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OVAE", "name": "Ontology of Vaccine Adverse Events", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1051, "download_url": "media/ontologies/OVAE/11/ovae.owl", "submission_id": 11, "domain": null, "description": "A biomedical ontology in the domain of vaccine adverse events.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ovae.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ovae.owl" } ], "taxon": null, "date_released": "2017-12-13T11:12:16.026775", "date_created": "2017-12-13T11:12:16.026797", "home_page": "http://www.violinet.org/ovae/", "version": null, "has_ontology_language": "OWL", "nb_classes": 1555, "nb_individuals": 22, "nb_properties": 144, "max_depth": 16, "max_children": 45, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "be09c4baffd91fbb051813233424bf38" } }, { "acronym": "PACO", "name": "Physical Activity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2287, "download_url": "media/ontologies/PACO/2/paco.owl", "submission_id": 2, "domain": null, "description": "Physical Activity Concept Ontology (PACO) contains various concepts that are required to describe one's physical activity. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-02-14T00:00:00", "date_created": "2019-02-14T19:18:45", "home_page": null, "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 224, "nb_individuals": 59, "nb_properties": 21, "max_depth": 6, "max_children": 38, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PAE", "name": "Plant Anatomy", "status": "Classified", "topics": null, "species": null, "submission": { "id": 128, "download_url": "media/ontologies/PAE/13/pae.obo", "submission_id": 13, "domain": null, "description": "REPLACED BY: Plant Ontology (PO). A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. Note that this has been subsumed into the PO. This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant anatomical entity branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/", "documentation": "http://www.plantontology.org/docs/docs.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-20T00:00:00", "date_created": "2013-08-22T01:04:12", "home_page": "http://www.plantontology.org", "version": "Release #20", "has_ontology_language": "OBO", "nb_classes": 1548, "nb_individuals": 0, "nb_properties": 9, "max_depth": 10, "max_children": 62, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PARTUMDO", "name": "postpartum depression ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4572, "download_url": "media/ontologies/PARTUMDO/1/partumdo.owl", "submission_id": 1, "domain": null, "description": "This ontology is for use in extracting postpartum depression condition codes, and also comorbidities and diseases often mistaken for postpartum depression. The ontology describes not only the codes but also the relationships between these various diseases/risk factors for use in automatically extracting relevant patient populations from Electronic Health Records", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-07-08T00:00:00", "date_created": "2021-07-08T15:08:06", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 734, "nb_individuals": 4844, "nb_properties": 13, "max_depth": 10, "max_children": 23, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PATCT", "name": "Placental Cell Type", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3300, "download_url": "media/ontologies/PATCT/1/patct.owl", "submission_id": 1, "domain": null, "description": "Cell types associated with placental structure and function. This Cell Type ontology builds on the Cell Ontology (CL) as well as the BRENDA Tissue and Enzyme Source Ontology (BTO) and was further developed by PAT External Scientific Panel Members and contributions from other subject matter experts.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-01-13T00:00:00", "date_created": "2020-01-13T20:16:28", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 153, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PATEL", "name": "Archana Patel", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4359, "download_url": "media/ontologies/PATEL/1/patel.owl", "submission_id": 1, "domain": null, "description": "Covid19 Impact on Banking Ontology (Covid19-IBO) provides semantic information about the impact of the Covid-19 on the banking sector of India", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-03-18T00:00:00", "date_created": "2021-03-18T20:20:34", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 123, "nb_individuals": 0, "nb_properties": 28, "max_depth": 6, "max_children": 14, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PATGV", "name": "Placental Genetic Variance", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3299, "download_url": "media/ontologies/PATGV/1/patgv.owl", "submission_id": 1, "domain": null, "description": "Includes variations of DNA sequence, chromosomal structure and copy number, as well as RNA and translational variation. The Genetic Variation ontology expands on work done for Variation Ontology (VariO) and Sequence Types and Features Ontology (SO) which can be found on NCBO. This ontology was further developed by PAT External Scientific Panel Members and contributions from other subject matter experts.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-01-13T00:00:00", "date_created": "2020-01-13T20:00:27", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 73, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PATHLEX", "name": "Anatomic Pathology Lexicon", "status": "Classified", "topics": null, "species": null, "submission": { "id": 210, "download_url": "media/ontologies/PATHLEX/5/pathlex.owl", "submission_id": 5, "domain": null, "description": "PathLex, a comprehensive lexicon—a unified language of anatomic pathology terms—for standardized indexing and retrieval of anatomic pathology information resources. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-01-22T08:00:00", "date_created": "2013-01-22T20:05:19", "home_page": null, "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 1786, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 1522, "avg_children": 28, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PATIT", "name": "Placental Investigative Technique", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3304, "download_url": "media/ontologies/PATIT/1/patit.owl", "submission_id": 1, "domain": null, "description": "Experimental methods and observation types used in placental research. The PAT Investigative Techniques ontology builds on work done for a handful of existing ontologies, including the Ontology for Biomedical Investigations (OBI) and NCI Thesaurus (NCIT), and was further developed by PAT External Scientific Panel Members and contributions from other subject matter experts.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-01-13T00:00:00", "date_created": "2020-01-13T20:09:29", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 139, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 18, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PATMHC", "name": "Placental Maternal Health Conditions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3308, "download_url": "media/ontologies/PATMHC/1/patmhc.owl", "submission_id": 1, "domain": null, "description": "Physical and psychological disorders in the mother that occur during pregnancy, childbirth, and the postpartum period. These include both pre-existing and gestational maternal health conditions that may result in adverse pregnancy outcomes. The Maternal Conditions Ontology builds on the work done for a handful of existing ontologies, including the Human Phenotype Ontology (HPO) and NCI Thesaurus (NCIT), and was further developed by PAT External Scientific Panel Members and contributions from other subject matter experts.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-01-13T00:00:00", "date_created": "2020-01-13T19:47:07", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 228, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PATO", "name": "Phenotype And Trait Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7349, "download_url": "media/ontologies/PATO/200/pato.owl", "submission_id": 200, "domain": "phenotype", "description": "An ontology of phenotypic qualities (properties, attributes or characteristics)", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/28387809", "title": "The anatomy of phenotype ontologies: principles, properties and applications" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/15642100", "title": "Using ontologies to describe mouse phenotypes" } ], "products": [ { "id": "pato.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pato.owl" }, { "id": "pato.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pato.obo" }, { "id": "pato.json", "ontology_purl": "http://purl.obolibrary.org/obo/pato.json" }, { "id": "pato/pato-base.owl", "description": "Includes axioms linking to other ontologies, but no imports of those ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/pato/pato-base.owl" } ], "taxon": null, "date_released": "2025-05-26T12:47:17.158275", "date_created": "2025-05-26T12:47:17.158278", "home_page": "https://github.com/pato-ontology/pato/", "version": null, "has_ontology_language": "OWL", "nb_classes": 8625, "nb_individuals": 0, "nb_properties": 252, "max_depth": 33, "max_children": 1005, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "b103070bfd64780c68079695d199ccde" } }, { "acronym": "PAYOR", "name": "Payor", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5542, "download_url": "media/ontologies/PAYOR/1/payor.skos", "submission_id": 1, "domain": null, "description": "This class refers to the entity that made the payment on behalf of the interviewee.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-07T00:00:00", "date_created": "2022-12-07T20:00:29", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 6, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHMAMMADO", "name": "Phallusia mammillata Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 120, "download_url": "media/ontologies/PHMAMMADO/2/phmammado.obo", "submission_id": 2, "domain": null, "description": "The first ontology describing the anatomy and the development of Phallusia mammillata. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-07T00:00:00", "date_created": "2016-08-04T22:06:52", "home_page": "http://www.aniseed.cnrs.fr/", "version": null, "has_ontology_language": "OBO", "nb_classes": 880, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 371, "avg_children": 88, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PIERO", "name": "Enzyme Reaction Ontology for annotating Partial Information of chemical transformation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 605, "download_url": "media/ontologies/PIERO/10/piero.owl", "submission_id": 10, "domain": null, "description": "Enzyme Reaction Ontology for annotating Partial Information of chemical transformation", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-05-01T23:47:11", "date_created": "2015-02-13T00:47:38", "home_page": "http://reactionontology.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 36, "nb_individuals": 0, "nb_properties": 87, "max_depth": 3, "max_children": 10, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PLANA", "name": "planaria-ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5739, "download_url": "media/ontologies/PLANA/28/plana.owl", "submission_id": 28, "domain": "anatomy and development", "description": "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/34318308", "title": "Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms" } ], "products": [ { "id": "plana.owl", "ontology_purl": "http://purl.obolibrary.org/obo/plana.owl" }, { "id": "plana.obo", "ontology_purl": "http://purl.obolibrary.org/obo/plana.obo" } ], "taxon": null, "date_released": "2023-03-27T12:59:31.758703", "date_created": "2023-03-27T12:59:31.758713", "home_page": "https://github.com/obophenotype/planaria-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 876, "nb_individuals": 18, "nb_properties": 160, "max_depth": 11, "max_children": 206, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "1896425cc842597b0e0011a633b34965" } }, { "acronym": "PLANP", "name": "Planarian Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3511, "download_url": "media/ontologies/PLANP/6/planp.owl", "submission_id": 6, "domain": "phenotype", "description": "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "planp.owl", "ontology_purl": "http://purl.obolibrary.org/obo/planp.owl" }, { "id": "planp.obo", "ontology_purl": "http://purl.obolibrary.org/obo/planp.obo" } ], "taxon": null, "date_released": "2020-04-06T14:15:10.088986", "date_created": "2020-04-06T14:15:10.089003", "home_page": "https://github.com/obophenotype/planarian-phenotype-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 3562, "nb_individuals": 19, "nb_properties": 206, "max_depth": 12, "max_children": 150, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c711e318d9ee0e10140f58aa4ba4e78e" } }, { "acronym": "PLANTSO", "name": "Plant Stress Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7901, "download_url": "media/ontologies/PLANTSO/5/plantso.owl", "submission_id": 5, "domain": null, "description": "This ontology describes biotic and abiotic stresses that a plant may encounter., An ontology describing biotic and abiotic plant stresses.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-01-15T02:14:26", "date_created": "2026-01-14T00:00:00", "home_page": "https://github.com/Planteome/plant-stress-ontology", "version": "2026-01-08", "has_ontology_language": "OWL", "nb_classes": 4900, "nb_individuals": 48, "nb_properties": 141, "max_depth": 36, "max_children": 70, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PMDO", "name": "Parkinson and Movement Disorder Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6268, "download_url": "media/ontologies/PMDO/4/pmdo.owl", "submission_id": 4, "domain": null, "description": "The Parkinson Movement Disorder Ontology (PMDO) uses a systematic analysis of movement disorder instruments, extensive review of literature led by movement disorder specialists, and the AMP PD knowledge portal with an iterative ontology engineering process. The current version of PMDO is focused on parkinsonian disorders with classes representing three broad categories of: (1) neurological findings, (2) treatment plans, and (3) instruments used to evaluate various traits of PD. \r\n\r\nRelease notes (v1.0):\r\nThis version models the MDS Clinical Diagnostic Criteria for Parkinson’s Disease (2015), including:\r\n1. Essential criteria (1)\r\n2. Supportive criteria (4)\r\n3. Absolute exclusion criteria (9)\r\n4. Red flags (10)", "documentation": "https://bmhinformatics.case.edu/", "publication": "https://www.medrxiv.org/content/medrxiv/early/2020/11/12/2020.11.09.20228577.full.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2023-12-12T00:00:00", "date_created": "2023-12-13T16:58:53", "home_page": "https://bmhinformatics.case.edu/", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 629, "nb_individuals": 0, "nb_properties": 21, "max_depth": 11, "max_children": 39, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PR", "name": "PRotein Ontology (PRO)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7739, "download_url": "media/ontologies/PR/87/pr.owl", "submission_id": 87, "domain": "chemistry and biochemistry", "description": "An ontological representation of protein-related entities", "documentation": "https://proconsortium.org/download/current/pro_readme.txt", "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/27899649", "title": "Protein Ontology (PRO): enhancing and scaling up the representation of protein entities" } ], "products": [ { "id": "pr.owl", "title": "pro_reasoned.owl", "description": "PRO after reasoning has been applied, OWL format. Add '.gz' for compressed.", "ontology_purl": "http://purl.obolibrary.org/obo/pr.owl" }, { "id": "pr.obo", "title": "pro_reasoned.obo", "description": "PRO after reasoning has been applied, OBO format.", "ontology_purl": "http://purl.obolibrary.org/obo/pr.obo" }, { "id": "pr-asserted.owl", "title": "pro_nonreasoned.owl", "description": "PRO without reasoning applied, OWL format. Add '.gz' for compressed.", "ontology_purl": "http://purl.obolibrary.org/obo/pr-asserted.owl" }, { "id": "pr-asserted.obo", "title": "pro_nonreasoned.obo", "description": "PRO without reasoning applied, OBO format.", "ontology_purl": "http://purl.obolibrary.org/obo/pr-asserted.obo" } ], "taxon": null, "date_released": "2025-11-17T12:49:01.055353", "date_created": "2025-11-17T12:49:01.055357", "home_page": "http://proconsortium.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 365852, "nb_individuals": 0, "nb_properties": 24, "max_depth": 17, "max_children": 102399, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "36a120be5472584805187f9861814b5a" } }, { "acronym": "PYRAMIDALH", "name": "NeuroMorpho.Org Pyramidal cell systems connectivity", "status": "Classified", "topics": null, "species": null, "submission": { "id": 576, "download_url": "media/ontologies/PYRAMIDALH/3/pyramidalh.owl", "submission_id": 3, "domain": null, "description": "A hierarchy of Pyramidal cell types projecting to achieve specific systems connectivity such as cortico-thalamic, cortico-spinal, cortico-cortical projections. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-03-31T01:10:06", "date_created": "2017-03-31T01:10:06", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 10, "nb_individuals": 15, "nb_properties": 0, "max_depth": 1, "max_children": 8, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RDA-CONTENT", "name": "RDA Content type", "status": "Classified", "topics": null, "species": null, "submission": { "id": 917, "download_url": "media/ontologies/RDA-CONTENT/1/rda-content.owl", "submission_id": 1, "domain": null, "description": "A categorization reflecting the fundamental form of communication in which the content is expressed and the human sense through which it is intended to be perceived.\r\nRequired data for RDA (Resource Description and Access)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-13T00:00:00", "date_created": "2017-10-13T16:50:01", "home_page": "http://www.rdaregistry.info/termList/RDAContentType/", "version": null, "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 25, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SCDO", "name": "Sickle Cell Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4468, "download_url": "media/ontologies/SCDO/18/scdo.owl", "submission_id": 18, "domain": "disease", "description": "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "scdo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/scdo.owl" }, { "id": "scdo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/scdo.obo" } ], "taxon": null, "date_released": "2021-05-10T13:17:51.080389", "date_created": "2021-05-10T13:17:51.080405", "home_page": "https://scdontology.h3abionet.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 2072, "nb_individuals": 0, "nb_properties": 61, "max_depth": 11, "max_children": 91, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "90809637cc07c0f7937375fd79812904" } }, { "acronym": "SCO_V1", "name": "Sustainability Core Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7653, "download_url": "media/ontologies/SCO_V1/5/sco_v1.owl", "submission_id": 5, "domain": null, "description": "The Sustainability Core Ontology (SCO) is a middle-level ontology, covering the terminology related to the three major theoretical challenges of sustainability:\r\n1) The polysemy of the term sustainability.\r\n2) The relationship between sustainability and sustainable development.\r\n3) The complexity underlying sustainability.\r\nSCO is designed to be the pivotal resource upon which to harmonize and integrate ontologies regarding sustainability. The ultimate goal is to establish a family of interoperable sustainability ontologies. Currently, SCO employs Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO) as the upper-level ontologies. SCO V1.1.0 is the current release and is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO. SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). SCO V1.1.0. covers three natural languages, English, French, and Italian. SCO V1.1.0. conforms to OBO-Foundry principles.\r\n\r\nThe most recent version of SCO-B segment can always be found at https://w3id.org/sco. The most recent version of SCO-U segment can always be found at https://w3id.org/sco/sco-u., SCO is a middle-level ontology, representing the major theoretical challenges to sustainability:\n1) The polysemy of the term sustainability.\n2) The relationship between sustainability and sustainable development.\n3) The complexity underlying sustainability.\nSCO aims to play a pivotal role in harmonizing and integrating top-level and domain ontologies regarding sustainability., SCO V1.1.0 aligns with two Top-Level Ontologies (TLOs), Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO). SCO V1.1.0 is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO (as SCO V1.0.0). SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). This file provides SCO-B segment.\n\nReferences – TLOs: \nhttps://github.com/BFO-ontology/BFO-2020 \nhttps://ontouml.readthedocs.io/en/latest/intro/ufo.html \nhttps://nemo-ufes.github.io/gufo/", "documentation": "https://www.w3id.org/sco/sco-u\\nhttps://www.w3id.org/sco/sco-u-b-mapping", "publication": "['https://doi.org/10.31219/osf.io/z8uqr']", "publications": null, "products": null, "taxon": null, "date_released": "2025-10-11T00:00:00", "date_created": "2025-10-11T00:00:00", "home_page": "https://www.w3id.org/sco/repo", "version": "Version 1.1.0. ; segment B.", "has_ontology_language": "OWL", "nb_classes": 80, "nb_individuals": 2, "nb_properties": 84, "max_depth": 8, "max_children": 7, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "QUDT", "name": "Quantities, Units, Dimensions, and Types Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 202, "download_url": "media/ontologies/QUDT/4/qudt.owl", "submission_id": 4, "domain": null, "description": "The QUDT, or 'Quantity, Unit, Dimension and Type' collection of ontologies define the base classes properties, and restrictions used for modeling physical quantities, units of measure, and their dimensions in various measurement systems. The goal of the QUDT ontology is to provide a unified model of, measurable quantities, units for measuring different kinds of quantities, the numerical values of quantities in different units of measure and the data structures and data types used to store and manipulate these objects in software. This OWL schema is a foundation for a basic treatment of units.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-08-12T01:14:36", "date_created": "2013-08-12T01:14:36", "home_page": "http://qudt.org/", "version": "$Id: OSG_qudt-(v1.1).ttl 4989 2011-06-01 21:56:40Z RalphHodgson $", "has_ontology_language": "OWL", "nb_classes": 205, "nb_individuals": 71, "nb_properties": 109, "max_depth": 6, "max_children": 24, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "QUDT2", "name": "Quantities, Units, Dimensions and Types (QUDT) Schema - Version 2.0", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3263, "download_url": "media/ontologies/QUDT2/1/qudt2.owl", "submission_id": 1, "domain": null, "description": "The QUDT, or \"Quantity, Unit, Dimension and Type\" schema defines the base classes properties, and restrictions used for modeling physical quantities, units of measure, and their dimensions in various measurement systems. The goal of the QUDT ontology is to provide a unified model of, measurable quantities, units for measuring different kinds of quantities, the numerical values of quantities in different units of measure and the data structures and data types used to store and manipulate these objects in software.\r\n\r\nExcept for unit prefixes, all units are specified in separate vocabularies. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-10-09T00:00:00", "date_created": "2020-01-16T02:21:37", "home_page": "http://qudt.org/doc/2016/DOC_SCHEMA-QUDT-v2.0.html", "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 108, "nb_individuals": 95, "nb_properties": 109, "max_depth": 5, "max_children": 24, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SDOED", "name": "Social Determinants of Education Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6935, "download_url": "media/ontologies/SDOED/1/sdoed.owl", "submission_id": 1, "domain": null, "description": "Social Determinants of Education Ontology (SDoE) arise from the growing recognition that various factors influence educational outcomes.\r\nEducational success or failure is not solely determined by in-school factors but external factors including social, economic, and environmental influences effect the edcational outcome.\r\ne.g. family income, access to resources, neighborhood, health, and more\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-10-13T00:00:00", "date_created": "2024-10-14T02:04:23", "home_page": null, "version": "V1", "has_ontology_language": "OWL", "nb_classes": 231, "nb_individuals": 0, "nb_properties": 0, "max_depth": 7, "max_children": 17, "avg_children": 1, "classifiable": true, "nb_inconsistent": 1, "indexed": true, "md5sum": null } }, { "acronym": "PMO", "name": "Performed Music Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 914, "download_url": "media/ontologies/PMO/11/pmo.owl", "submission_id": 11, "domain": null, "description": "An extension to the Library of Congress BIBFRAME ontology for performed music.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-05T05:12:48", "date_created": "2017-12-05T05:12:48", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 53, "nb_individuals": 51, "nb_properties": 27, "max_depth": 3, "max_children": 25, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHAGE", "name": "Phylogenetics Ontology", "status": "Unloadable", "topics": [], "species": [], "submission": { "id": 111, "download_url": "media/ontologies/PHAGE/5/phage.owl", "submission_id": 5, "domain": null, "description": "This ontology represents the seven steps of phylogenetic analyses. Each root concept step is composed from a set of resource annotations (to represent the data-flow) and programs (to represent the control flow). Object properties serve to represent relations to annotate data (e.g. has_RetrievedInDatabase, has_ModeledBy, etc.) and reorder the sequence of programs (e.g. has_InputOutput).This ontology has been collected in a semi-automated way from well-known databases such as NCBI, GeneOntology, UniProtKB and Felsenstein’s Web site through Web crawling and mapping techniques.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-05-02T00:00:00", "date_created": "2016-07-05T22:30:59", "home_page": null, "version": "5.0", "has_ontology_language": "OWL", "nb_classes": 48543, "nb_individuals": 0, "nb_properties": 37, "max_depth": 19, "max_children": 9377, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PNADO", "name": "Pneumonia Diagnosis Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6895, "download_url": "media/ontologies/PNADO/3/pnado.owl", "submission_id": 3, "domain": null, "description": "Pneumonia Diagnosis Ontology (PNADO) provides the necessary knowledge to diagnose infective pneumonia. It covers symptoms and clinical signs, clinical history, pathogens, laboratory tests and results, imaging, differential diagnosis, complications and pneumonia types.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-09-23T00:00:00", "date_created": "2024-09-23T11:14:14", "home_page": null, "version": "Version 2.0, 2024/07/10", "has_ontology_language": "OWL", "nb_classes": 1601, "nb_individuals": 18, "nb_properties": 42, "max_depth": 18, "max_children": 44, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PO", "name": "Plant Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7885, "download_url": "media/ontologies/PO/29/po.owl", "submission_id": 29, "domain": "anatomy and development", "description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/23220694", "title": "The plant ontology as a tool for comparative plant anatomy and genomic analyses." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578", "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." } ], "products": [ { "id": "po.owl", "ontology_purl": "http://purl.obolibrary.org/obo/po.owl" }, { "id": "po.obo", "ontology_purl": "http://purl.obolibrary.org/obo/po.obo" } ], "taxon": { "id": "NCBITaxon:33090", "label": "Viridiplantae" }, "date_released": "2026-01-19T20:06:10.474577", "date_created": "2026-01-19T20:06:10.474580", "home_page": "http://browser.planteome.org/amigo", "version": null, "has_ontology_language": "OWL", "nb_classes": 2028, "nb_individuals": 9, "nb_properties": 125, "max_depth": 14, "max_children": 341, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "0bb19e6a6107167a478453be710258a0" } }, { "acronym": "PORO", "name": "Porifera Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4689, "download_url": "media/ontologies/PORO/10/poro.owl", "submission_id": 10, "domain": "anatomy", "description": "An ontology covering the anatomy of the taxon Porifera (sponges)", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1186/2041-1480-5-39", "title": "The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology" } ], "products": [ { "id": "poro.owl", "ontology_purl": "http://purl.obolibrary.org/obo/poro.owl" }, { "id": "poro.obo", "ontology_purl": "http://purl.obolibrary.org/obo/poro.obo" } ], "taxon": { "id": "NCBITaxon:6040", "label": "Porifera" }, "date_released": "2021-11-15T12:45:32.264093", "date_created": "2021-11-15T12:45:32.264107", "home_page": "https://github.com/obophenotype/porifera-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 896, "nb_individuals": 2, "nb_properties": 54, "max_depth": 10, "max_children": 48, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "6c5da5df4d6270c4064b5345c35cada9" } }, { "acronym": "POSITIONALH", "name": "NeuroMorpho.Org bilateral positions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 388, "download_url": "media/ontologies/POSITIONALH/2/positionalh.owl", "submission_id": 2, "domain": null, "description": "A hierarchy of bilateral positions commonly attached to all brain regions in bilateral species.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-29T00:00:00", "date_created": "2016-08-29T19:43:02", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 3, "nb_individuals": 88, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PP", "name": "Pipeline Patterns Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 667, "download_url": "media/ontologies/PP/1/pp.owl", "submission_id": 1, "domain": null, "description": "To answer the need for a workflow representing a sequence of data transformations, a high-level process ontology was defined, denoted Pipeline Patterns (PP) ontology. \r\n\r\nEvery concept is generically a Data (class from EDAM), which can be further specified as an Entry (P:00002) or an Exit (P:00009). All Entries can be subjected to an Operation (class from EDAM) producing an Intermediate (P:00010). An Intermediate has a TemporalEntity associated to represent its time of creation. Some Entries are specifically of the type Exit, meaning that they will represent concepts that exit the current category and be passed to the next one on the workflow. Additionally, in order to permit the treatment of a set of objects as a single entity, this high-level ontology considers the concept of List (P:00004) and more specifically an Aggregate (P:00005), containing a set of Data or Entry, respectively.\r\nThe concept Intermediate is an Entry, allowing for the successive application of an operation to an Element. This is particularly useful in the case of the application of sequential set of operations.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-12-17T00:00:00", "date_created": "2014-12-17T14:59:53", "home_page": "https://bitbucket.org/PlantExpAssay/ontology", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 15, "nb_individuals": 0, "nb_properties": 4, "max_depth": 2, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PPO", "name": "Plant Phenology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7417, "download_url": "media/ontologies/PPO/12/ppo.owl", "submission_id": 12, "domain": "phenotype", "description": "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ppo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ppo.owl" } ], "taxon": { "id": "NCBITaxon:33090", "label": "Viridiplantae" }, "date_released": "2025-06-23T16:30:58.207772", "date_created": "2025-06-23T16:30:58.207774", "home_page": "https://github.com/PlantPhenoOntology/PPO", "version": null, "has_ontology_language": "OWL", "nb_classes": 544, "nb_individuals": 0, "nb_properties": 36, "max_depth": 13, "max_children": 79, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c549acda9727a092004511d2e088af7c" } }, { "acronym": "KENYAANC", "name": "kenyaancfile", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4698, "download_url": "media/ontologies/KENYAANC/1/kenyaanc.owl", "submission_id": 1, "domain": null, "description": "Ontology on kenyan ANC terms. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-11-12T00:00:00", "date_created": "2021-11-13T04:33:31", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 76, "nb_properties": 56, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "KORO", "name": "Knowledge Object Reference Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 91, "download_url": "media/ontologies/KORO/2/koro.owl", "submission_id": 2, "domain": null, "description": "An ontology to define the parts of a Knowledge Object and their relations built using the Basic Formal Ontology and Information Artifact Ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-03-09T00:00:00", "date_created": "2017-09-17T16:13:07", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 86, "nb_individuals": 24, "nb_properties": 54, "max_depth": 8, "max_children": 8, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PCO", "name": "Population and Community Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4443, "download_url": "media/ontologies/PCO/18/pco.owl", "submission_id": 18, "domain": "collections of organisms", "description": "An ontology about groups of interacting organisms such as populations and communities", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "pco.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pco.owl" } ], "taxon": null, "date_released": "2021-05-03T12:41:20.270317", "date_created": "2021-05-03T12:41:20.270330", "home_page": "https://github.com/PopulationAndCommunityOntology/pco", "version": null, "has_ontology_language": "OWL", "nb_classes": 221, "nb_individuals": 18, "nb_properties": 110, "max_depth": 31, "max_children": 16, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "8d8ef36ff49c36bd50a9a6b02087e3e2" } }, { "acronym": "PDO", "name": "Pathogenic Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 592, "download_url": "media/ontologies/PDO/6/pdo.owl", "submission_id": 6, "domain": null, "description": "An ontology for describing both human infectious diseases caused by microbes and the diseases that is related to microbial infection. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-03-31T00:00:00", "date_created": "2016-03-31T09:16:15", "home_page": "http://mdb.bio.titech.ac.jp/pdo", "version": "Version 0.7", "has_ontology_language": "OWL", "nb_classes": 388, "nb_individuals": 0, "nb_properties": 13, "max_depth": 7, "max_children": 26, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PDO_CAS", "name": "Plant Diversity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 726, "download_url": "media/ontologies/PDO_CAS/1/pdo_cas.owl", "submission_id": 1, "domain": null, "description": "Plant Diversity Ontology (PDO) is the outcome of the construction tasks of domain ontology of science in the project of Scientific & Technological Knowledge Organization Systems (STKOS). The structure of PDO centers on species, including micro level of molecular, cell and tissue, medium level of plant organs, species and population, and macro level of ecosystem. The classes of PDO also capture the habitat, environmental conditions and expand the general characteristics of plants, completing the instances richness for plant species, geographical, classification and morphology. Furthermore, PDO builds the relationships among species, region, morphology, plant organs, developmental stage, revealing the list of species in an area, the morphology and life form of plants, and development process of species. In sum, PDO shows a growth process or development stage of a species and its structure characteristics in particular space and time scale, realizing the description of species diversity, ecosystem diversity and genetic diversity. At present, PDO has been applied to the platform of Go to Selected Open Access Journals (GoOA) developed by National Science Library of Chinese Academy of Sciences, supporting concept retrieval and concept extension for GoOA.", "documentation": null, "publication": "http://124.16.154.130:8080/lis/CN/10.13266/j.issn.0252-3116.2015.03.017", "publications": null, "products": null, "taxon": null, "date_released": "2015-04-30T00:00:00", "date_created": "2015-04-30T11:28:10", "home_page": "http://gooa.las.ac.cn/external/index.jsp", "version": null, "has_ontology_language": "OWL", "nb_classes": 380, "nb_individuals": 12168, "nb_properties": 88, "max_depth": 0, "max_children": 46, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PDON", "name": "Parkinson's Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 449, "download_url": "media/ontologies/PDON/1/pdon.owl", "submission_id": 1, "domain": null, "description": "Here, we introduce the Parkinson’s disease ontology (PDO) as a comprehensive semantic framework covering the whole breadth of the Parkinson’s knowledge domain. This ontology with a subclass-based taxonomic hierarchy not only covers the broad spectrum of major biomedical concepts from molecular to clinical features of the disease, but also the different views on disease features held by molecular biologists, clinicians and drug developers. This resource has been created for use in the IMI-funded AETIONOMY project (www.aetionomy.org). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-17T00:00:00", "date_created": "2014-08-18T08:32:33", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 632, "nb_individuals": 0, "nb_properties": 12, "max_depth": 7, "max_children": 43, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PDQ", "name": "Physician Data Query", "status": "Classified", "topics": null, "species": null, "submission": { "id": 717, "download_url": "media/ontologies/PDQ/11/pdq.umls", "submission_id": 11, "domain": null, "description": "Physician Data Query (PDQ) Terminology is part of NCI's comprehensive cancer information database, which contains expert summaries on a wide range of cancer topics, a listing of some 30,000 cancer clinical trials from around the world, a directory of genetics services professionals, the NCI Dictionary of Cancer Terms, and the NCI Drug Dictionary.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:18", "date_created": "2017-02-06T21:26:18", "home_page": null, "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 7871, "nb_individuals": 0, "nb_properties": 17, "max_depth": 10, "max_children": 89, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PGHD-COM", "name": "DATA COMMUNICATION", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5530, "download_url": "media/ontologies/PGHD-COM/1/pghd-com.skos", "submission_id": 1, "domain": null, "description": "Vocabulary describing the method with which a specific metadata instance was sent to CEDAR", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-02T00:00:00", "date_created": "2022-12-02T16:19:46", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 2, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PGHD-COMM", "name": "PGHD COMMUNICATION", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6197, "download_url": "media/ontologies/PGHD-COMM/3/pghd-comm.skos", "submission_id": 3, "domain": null, "description": "Ontology containing terms describing the ancillary information surrounding the collection of Blood Pressure data and the \r\n communication via Interactive Voice Response in the context of the VODAN-Africa project.", "documentation": "https://github.com/abdullahikawu/PGHD/blob/main/vocabularies/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-07T00:00:00", "date_created": "2023-11-13T16:00:16", "home_page": "https://github.com/abdullahikawu/PGHD/", "version": "1.2", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 15, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PGXO", "name": "PGxO", "status": "Classified", "topics": null, "species": null, "submission": { "id": 577, "download_url": "media/ontologies/PGXO/2/pgxo.owl", "submission_id": 2, "domain": null, "description": "PGxO: a lite Pharmacogenomic Ontology.\r\nThis ontology aims at providing a small set of concepts and roles that may type elements of pharmacogenomic\r\n relationships.\r\nIts concepts has been mapped to other existing ontologies. Mappings are not included in this version for lisibility purposes. Mapping are available on demand. ", "documentation": "https://pmonnin.github.io/nettab2017.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-06-09T00:00:00", "date_created": "2017-06-09T21:58:19", "home_page": "https://members.loria.fr/ACoulet/", "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 11, "nb_individuals": 0, "nb_properties": 4, "max_depth": 2, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHARE", "name": "Pharmacogenomic Relationships Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 249, "download_url": "media/ontologies/PHARE/2/phare.owl", "submission_id": 2, "domain": null, "description": "The PHArmacogenomic RElationships Ontology (or PHARE) proposes concepts and roles to represent relationships of pharmacogenomics interest.", "documentation": null, "publication": "http://www.jbiomedsem.com/content/2/S2/S10", "publications": null, "products": null, "taxon": null, "date_released": "2011-01-14T08:00:00", "date_created": "2011-01-14T18:40:10", "home_page": "http://bioportal.bioontology.org/ontologies/45138", "version": "Developed by the Helix Group, Department of Genetics, Stanford University, \nand by the Orpailleur Group, LORIA - INRIA Nancy. \n", "has_ontology_language": "OWL", "nb_classes": 229, "nb_individuals": 0, "nb_properties": 83, "max_depth": 5, "max_children": 32, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PhenomeNETSH", "name": "PhenomeNET Ontology - Shrinked version", "status": "Unloadable", "topics": [], "species": [], "submission": { "id": 3925, "download_url": "media/ontologies/PhenomeNETSH/8/phenomenetsh.owl", "submission_id": 8, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-09-15T10:31:15.772792", "date_created": "2020-09-15T10:31:15.772743", "home_page": null, "version": "2020", "has_ontology_language": "OWL", "nb_classes": 284987, "nb_individuals": 0, "nb_properties": 210, "max_depth": 22, "max_children": 27614, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "PMA", "name": "Portfolio Management Application", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 511, "download_url": "media/ontologies/PMA/4/pma.owl", "submission_id": 4, "domain": null, "description": "The Portfolio Management Application (PMA) is a system for tracking grants and producing reports - Users can access grant data through a query interface and a variety of pre-defined forms and reports", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-11T07:00:00", "date_created": "2010-10-19T00:04:33", "home_page": null, "version": "0.9.1", "has_ontology_language": "OWL", "nb_classes": 2084, "nb_individuals": 0, "nb_properties": 9, "max_depth": 0, "max_children": 2084, "avg_children": 2084, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PREGONTO", "name": "Pregnancy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1983, "download_url": "media/ontologies/PREGONTO/1/pregonto.owl", "submission_id": 1, "domain": null, "description": "The pregnancy ontology is a biomedical ontology used for identifying pregnancies in routine health databases. The ontology was primarily developed for conducting surveillance of vaccine uptake in pregnant women in the UK.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-10-31T00:00:00", "date_created": "2018-10-31T21:49:36", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 39, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 17, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PREMEDONTO", "name": "Precision Medicine Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2035, "download_url": "media/ontologies/PREMEDONTO/1/premedonto.owl", "submission_id": 1, "domain": null, "description": "Precision MedicinePreMedOnto is an application ontology built for the precision medicine domain on top of gold standard biomedical ontologies. The ontology learning process involves mining the PubMed repository to extract domain specific texts, abstracts and vocabulary as sources of data. The information gathered is clustered and outlined to determine main modules. It reuses terms and concepts from NCIT, MESH and IOBC to construct the ontology hierarchy.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-11-24T00:00:00", "date_created": "2018-11-25T01:43:33", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 543, "nb_individuals": 0, "nb_properties": 10, "max_depth": 8, "max_children": 90, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RO", "name": "Relation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7938, "download_url": "media/ontologies/RO/33/ro.owl", "submission_id": 33, "domain": "upper", "description": "Relationship types shared across multiple ontologies", "documentation": "https://oborel.github.io/obo-relations/", "publication": null, "publications": null, "products": [ { "id": "ro.owl", "title": "Relation Ontology", "description": "Canonical edition", "ontology_purl": "http://purl.obolibrary.org/obo/ro.owl" }, { "id": "ro.obo", "title": "Relation Ontology in obo format", "description": "The obo edition is less expressive than the OWL, and has imports merged in", "ontology_purl": "http://purl.obolibrary.org/obo/ro.obo" }, { "id": "ro.json", "title": "Relation Ontology in obojson format", "ontology_purl": "http://purl.obolibrary.org/obo/ro.json" }, { "id": "ro/core.owl", "page": "https://github.com/oborel/obo-relations/wiki/ROCore", "title": "RO Core relations", "description": "Minimal subset intended to work with BFO-classes", "ontology_purl": "http://purl.obolibrary.org/obo/ro/core.owl" }, { "id": "ro/ro-base.owl", "page": "https://github.com/INCATools/ontology-development-kit/issues/50", "title": "RO base ontology", "description": "Axioms defined within RO and to be used in imports for other ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/ro/ro-base.owl" }, { "id": "ro/subsets/ro-interaction.owl", "title": "Interaction relations", "description": "For use in ecology and environmental science", "ontology_purl": "http://purl.obolibrary.org/obo/ro/subsets/ro-interaction.owl" }, { "id": "ro/subsets/ro-eco.owl", "title": "Ecology subset", "ontology_purl": "http://purl.obolibrary.org/obo/ro/subsets/ro-eco.owl" }, { "id": "ro/subsets/ro-neuro.owl", "page": "http://bioinformatics.oxfordjournals.org/content/28/9/1262.long", "title": "Neuroscience subset", "description": "For use in neuroscience", "ontology_purl": "http://purl.obolibrary.org/obo/ro/subsets/ro-neuro.owl" } ], "taxon": null, "date_released": "2026-02-02T13:26:16.787177", "date_created": "2026-02-02T13:26:16.787180", "home_page": "https://oborel.github.io/", "version": null, "has_ontology_language": "OWL", "nb_classes": 59, "nb_individuals": 91, "nb_properties": 705, "max_depth": 8, "max_children": 11, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "60ef6895c8270e57fddf76f3ff52034c" } }, { "acronym": "ROADMAP", "name": "Radiology Ontology of AI Datasets, Models and Projects", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8064, "download_url": "media/ontologies/ROADMAP/5/roadmap.owl", "submission_id": 5, "domain": null, "description": "ROADMAP provides a controlled terminology for the metadata that describe AI models and datasets. It builds on \"model cards\" and \"datasheets for datasets\" with imaging-specific descriptors. It includes a comprehensive set of metrics to assess the performance of AI models that work with images, text, and/or discrete data. ", "documentation": null, "publication": "['https://doi.org/10.1148/ryai.260070', 'https://doi.org/10.1148/ryai.260069']", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-20T00:00:00", "date_created": "2026-03-20T00:00:00", "home_page": null, "version": "2026-03", "has_ontology_language": "OWL", "nb_classes": 537, "nb_individuals": 4, "nb_properties": 20, "max_depth": 8, "max_children": 145, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LANDFORM", "name": "Landform classifiers", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 4397, "download_url": "media/ontologies/LANDFORM/2/landform.skos", "submission_id": 2, "domain": null, "description": "Machine-readable representation of the classifiers described in chapter 5 Landform, by J.G. Speight, in Australian soil and land survey field handbook (3rd edn).\r\n\r\nIn this technique for describing landforms, the whole land surface is viewed as a mosaic of tiles of odd shapes and sizes. The scheme is intended to produce a record of observations rather than inferences.\r\n\r\nThe data was converted from the print representation to this linked-data form by Linda Gregory assisted by Simon J D Cox.", "documentation": "https://www.publish.csiro.au/book/5230", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-02T00:00:00", "date_created": "2021-04-07T00:40:27", "home_page": null, "version": "3rd edition", "has_ontology_language": "SKOS", "nb_classes": 68, "nb_individuals": 406, "nb_properties": 64, "max_depth": 2, "max_children": 52, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PROCO", "name": "Process Chemistry Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5180, "download_url": "media/ontologies/PROCO/1/proco.owl", "submission_id": 1, "domain": "chemistry and biochemistry", "description": "PROCO covers process chemistry, the chemical field concerned with scaling up laboratory syntheses to commercially viable processes.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "proco.owl", "ontology_purl": "http://purl.obolibrary.org/obo/proco.owl" } ], "taxon": null, "date_released": "2022-06-27T12:51:00.253685", "date_created": "2022-06-27T12:51:00.253697", "home_page": "https://github.com/proco-ontology/PROCO", "version": null, "has_ontology_language": "OWL", "nb_classes": 922, "nb_individuals": 17, "nb_properties": 58, "max_depth": 15, "max_children": 33, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "97684b32ed8820ea7bf2088dc1fa2998" } }, { "acronym": "PROVO", "name": "Provenance Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 441, "download_url": "media/ontologies/PROVO/124/provo.owl", "submission_id": 124, "domain": null, "description": "The PROV Ontology (PROV-O) expresses the PROV Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes, properties, and restrictions that can be used to represent and interchange provenance information generated in different systems and under different contexts. It can also be specialized to create new classes and properties to model provenance information for different applications and domains.", "documentation": "http://www.w3.org/TR/prov-o/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-04T07:00:00", "date_created": "2013-08-17T00:11:20", "home_page": "http://www.w3.org/TR/prov-o/", "version": "Recommendation version 2013-04-30", "has_ontology_language": "OWL", "nb_classes": 31, "nb_individuals": 4, "nb_properties": 50, "max_depth": 3, "max_children": 7, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RS", "name": "Rat Strain Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8107, "download_url": "media/ontologies/RS/212/rs.owl", "submission_id": 212, "domain": "organisms", "description": "Ontology of rat strains", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24267899", "title": "Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD." } ], "products": [ { "id": "rs.owl", "ontology_purl": "http://purl.obolibrary.org/obo/rs.owl" }, { "id": "rs.obo", "ontology_purl": "http://purl.obolibrary.org/obo/rs.obo" } ], "taxon": { "id": "NCBITaxon:10114", "label": "Rattus" }, "date_released": "2026-04-13T13:09:10.782198", "date_created": "2026-04-13T13:09:10.782201", "home_page": "http://rgd.mcw.edu/rgdweb/search/strains.html", "version": null, "has_ontology_language": "OWL", "nb_classes": 5503, "nb_individuals": 0, "nb_properties": 1, "max_depth": 8, "max_children": 346, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "ff9a928bc247ab217a6debe9bc557955" } }, { "acronym": "RSA", "name": "Reference Sequence Annotation", "status": "Classified", "topics": null, "species": null, "submission": { "id": 245, "download_url": "media/ontologies/RSA/5/rsa.owl", "submission_id": 5, "domain": null, "description": "An ontology for sequence annotations and how to preserve them with reference sequences.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-05-23T01:11:48", "date_created": "2014-01-31T17:51:37", "home_page": null, "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 10, "nb_individuals": 5, "nb_properties": 12, "max_depth": 1, "max_children": 5, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LAND-SURFACE", "name": "Land Surface classifiers", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 4403, "download_url": "media/ontologies/LAND-SURFACE/1/land-surface.skos", "submission_id": 1, "domain": null, "description": "Machine-readable representation of the classifiers described in chapter 7 Land Surface, by R.C. McDonald, R.F. Isbell and J.G. Speight, in Australian soil and land survey field handbook (3rd edn).\r\n\r\nLand surface is concerned mainly with surface phenomena affecting land use and soil development that have traditionally been noted at the point of soil observation.", "documentation": "https://www.publish.csiro.au/book/5230", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-02T00:00:00", "date_created": "2021-04-01T23:36:24", "home_page": null, "version": "3rd Edition", "has_ontology_language": "SKOS", "nb_classes": 68, "nb_individuals": 514, "nb_properties": 58, "max_depth": 2, "max_children": 52, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PSDO", "name": "Performance Summary Display Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7961, "download_url": "media/ontologies/PSDO/5/psdo.owl", "submission_id": 5, "domain": "information", "description": "Ontology to reproducibly study visualizations of clinical performance", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "psdo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/psdo.owl" } ], "taxon": null, "date_released": "2026-02-16T13:22:51.941384", "date_created": "2026-02-16T13:22:51.941390", "home_page": "https://github.com/Display-Lab/psdo", "version": null, "has_ontology_language": "OWL", "nb_classes": 1252, "nb_individuals": 23, "nb_properties": 84, "max_depth": 15, "max_children": 41, "avg_children": 15, "classifiable": true, "nb_inconsistent": 20, "indexed": true, "md5sum": "2463123563278a19fca46024e23c5d97" } }, { "acronym": "PSDS", "name": "Plant Structure Development Stage", "status": "Classified", "topics": null, "species": null, "submission": { "id": 343, "download_url": "media/ontologies/PSDS/6/psds.obo", "submission_id": 6, "domain": null, "description": "REPLACED BY: Plant Ontology (PO). A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the Plant Ontology (PO).\r\nThis file is created by filtering plant_ontology_assert.obo to contain only terms from the plant structure development stage branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/", "documentation": "http://www.plantontology.org/docs/docs.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-08-21T07:00:00", "date_created": "2013-08-22T01:06:01", "home_page": "http://www.plantontology.org", "version": "Release #20", "has_ontology_language": "OBO", "nb_classes": 345, "nb_individuals": 0, "nb_properties": 10, "max_depth": 7, "max_children": 20, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PSIMOD", "name": "Protein Modification Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 31, "download_url": "media/ontologies/PSIMOD/4/psimod.obo", "submission_id": 4, "domain": null, "description": "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-05-30T00:00:00", "date_created": "2014-06-17T22:40:35", "home_page": "http://www.psidev.info/MOD", "version": "1.013.0", "has_ontology_language": "OBO", "nb_classes": 2001, "nb_individuals": 0, "nb_properties": 4, "max_depth": 9, "max_children": 176, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PSO", "name": "Plant Stress Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7866, "download_url": "media/ontologies/PSO/7/pso.owl", "submission_id": 7, "domain": "agriculture", "description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578", "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." } ], "products": [ { "id": "pso.owl", "ontology_purl": "http://purl.obolibrary.org/obo/pso.owl" }, { "id": "pso.obo", "ontology_purl": "http://purl.obolibrary.org/obo/pso.obo" } ], "taxon": null, "date_released": "2026-01-12T17:26:16.335377", "date_created": "2026-01-12T17:26:16.335382", "home_page": "https://github.com/Planteome/plant-stress-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 4900, "nb_individuals": 48, "nb_properties": 141, "max_depth": 36, "max_children": 70, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d630bd2cc7b6615e8fe726ff71c322bf" } }, { "acronym": "RELO", "name": "Relations Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 673, "download_url": "media/ontologies/RELO/2/relo.owl", "submission_id": 2, "domain": null, "description": "A collection of relations intended primarily for standardization across ontologies in the OBO Foundry and wider OBO library. It incorporates ROCore upper-level relations such as part of as well as biology-specific relationship types such as develops from.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-10-03T01:37:59", "date_created": "2017-10-03T01:37:59", "home_page": "https://github.com/oborel/obo-relations/", "version": null, "has_ontology_language": "OWL", "nb_classes": 79, "nb_individuals": 5, "nb_properties": 528, "max_depth": 9, "max_children": 5, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PSO_2", "name": "PatientSafetyOntologyRevisted", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3729, "download_url": "media/ontologies/PSO_2/3/pso_2.owl", "submission_id": 3, "domain": null, "description": "This is a revised version of the Patient Safety Ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-06-26T00:00:00", "date_created": "2020-06-27T10:07:25", "home_page": null, "version": "005", "has_ontology_language": "OWL", "nb_classes": 291, "nb_individuals": 0, "nb_properties": 7, "max_depth": 4, "max_children": 47, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PSY-LKSR", "name": "Psych Phenotypes Test Ontology (LKSR)", "status": "Classified", "topics": [ "mental health" ], "species": [ "Human" ], "submission": { "id": 4415, "download_url": "media/ontologies/PSY-LKSR/1/psy-lksr.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-20T11:12:52.130734", "date_created": "2021-04-20T11:12:52.130712", "home_page": null, "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 611, "nb_individuals": 50, "nb_properties": 276, "max_depth": 10, "max_children": 34, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PTO", "name": "Plant Trait Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 809, "download_url": "media/ontologies/PTO/427/pto.owl", "submission_id": 427, "domain": null, "description": "A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant part.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-10T02:14:53", "date_created": "2017-11-10T02:14:53", "home_page": "http://www.planteome.org", "version": "September 2016", "has_ontology_language": "OWL", "nb_classes": 1433, "nb_individuals": 0, "nb_properties": 1, "max_depth": 12, "max_children": 34, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PTRANS", "name": "Pathogen Transmission Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 519, "download_url": "media/ontologies/PTRANS/14/ptrans.obo", "submission_id": 14, "domain": null, "description": "This vocabulary describes a process that is the means of how a pathogen is transmitted from one host, reservoir, or source to another host. This transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-12-14T08:00:00", "date_created": "2010-12-15T02:10:23", "home_page": "http://diseaseontology.sourceforge.net/", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 28, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 4, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RADLEX", "name": "Radiology Lexicon", "status": "Classified", "topics": null, "species": null, "submission": { "id": 415, "download_url": "media/ontologies/RADLEX/37/radlex.owl", "submission_id": 37, "domain": null, "description": "RadLex is a controlled terminology for radiology-a single unified source of radiology terms for radiology practice, education, and research. For license information see : <a href=\"http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/RadLex_License_Agreement_and_Terms_of_Use_V2_Final.pdf\">http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/RadLex_License_Agreement_and_Terms_of_Use_V2_Final.pdf</a>\r\n\r\nConverted to use OWL format submissions", "documentation": "https://docs.google.com/document/d/10zRIBkXyj1eLt3LS_A7w3gSGRedXXoYvucH6H4trCZY/edit?hl=en#", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-11-16T00:00:00", "date_created": "2016-11-16T16:50:31", "home_page": "http://www.rsna.org/RadLex.aspx", "version": "3.14", "has_ontology_language": "OWL", "nb_classes": 46433, "nb_individuals": 46938, "nb_properties": 91, "max_depth": 20, "max_children": 747, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MIAPA", "name": "MIAPA Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 1019, "download_url": "media/ontologies/MIAPA/2/miapa.owl", "submission_id": 2, "domain": null, "description": "An application ontology to formalize annotation of phylogenetic data.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "miapa.owl", "ontology_purl": "http://purl.obolibrary.org/obo/miapa.owl" } ], "taxon": null, "date_released": "2017-12-13T01:59:36.295927", "date_created": "2017-12-13T01:59:36.295949", "home_page": "http://www.evoio.org/wiki/MIAPA", "version": null, "has_ontology_language": "OWL", "nb_classes": 211, "nb_individuals": 41, "nb_properties": 121, "max_depth": 5, "max_children": 32, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c723d319a81967b4b22e9fe5ea54794e" } }, { "acronym": "MICRO", "name": "Ontology of Prokaryotic Phenotypic and Metabolic Characters", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 1571, "download_url": "media/ontologies/MICRO/3/micro.owl", "submission_id": 3, "domain": "phenotype", "description": "An ontology of prokaryotic phenotypic and metabolic characters", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "micro.owl", "ontology_purl": "http://purl.obolibrary.org/obo/micro.owl" } ], "taxon": null, "date_released": "2018-06-18T13:34:09.904586", "date_created": "2018-06-18T13:34:09.904613", "home_page": "https://github.com/carrineblank/MicrO", "version": null, "has_ontology_language": "OWL", "nb_classes": 17287, "nb_individuals": 13, "nb_properties": 247, "max_depth": 22, "max_children": 432, "avg_children": 2, "classifiable": true, "nb_inconsistent": 2, "indexed": true, "md5sum": "db28fb7fa8eecd4859bb3643b31ecf53" } }, { "acronym": "NMOBR_1", "name": "NeuroMorpho.Org Complete Metadata Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 864, "download_url": "media/ontologies/NMOBR_1/18/nmobr_1.owl", "submission_id": 18, "domain": null, "description": "The complete hierarchy of species, brain regions, cell types, and experimental conditions representing the neuronal reconstructions shared on NeuroMorpho.Org.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T02:12:09", "date_created": "2017-11-28T02:12:09", "home_page": null, "version": "2.1", "has_ontology_language": "OWL", "nb_classes": 2538, "nb_individuals": 1119, "nb_properties": 2, "max_depth": 40, "max_children": 408, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RADXTT-MVREASONS", "name": "RADx Tiger Team Missing Value Reasons", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6153, "download_url": "media/ontologies/RADXTT-MVREASONS/10/radxtt-mvreasons.skos", "submission_id": 10, "domain": null, "description": "These concepts define the different reasons values might be missing from the RADx data record. The concepts have been approved by the RADx Executive Committee to fill in fields that do not have a value in them. \r\n\r\nThe concepts in this vocabulary were developed by the RADx Missing Values Tiger Team. The protocols for managing these concepts in the RADx Data Hub environment are still being developed and will be improved and described as part of the RADx program.", "documentation": "https://github.com/bmir-radx/radx-missing-value-reasons", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-25T01:22:12", "date_created": "2023-10-25T01:22:13", "home_page": "https://github.com/bmir-radx/radx-missing-value-reasons", "version": "0.1.2", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 26, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RAO", "name": "Rheumatoid Arthritis ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 546, "download_url": "media/ontologies/RAO/1/rao.owl", "submission_id": 1, "domain": null, "description": "A controlled vocabulary of RA-relevant information. Currently, only treatment information is available. ", "documentation": null, "publication": "http://www.sciencedirect.com/science/article/pii/S0933365716300689", "publications": null, "products": null, "taxon": null, "date_released": "2015-12-08T00:00:00", "date_created": "2015-12-08T14:45:44", "home_page": null, "version": "Version 1.0", "has_ontology_language": "OWL", "nb_classes": 280, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 204, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "rare_deneme", "name": "Alper K.", "status": "Classified", "topics": [ "biomedical" ], "species": [], "submission": { "id": 5604, "download_url": "media/ontologies/rare_deneme/1/rare_deneme.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-01-14T18:49:19.763229", "date_created": "2023-01-14T18:49:19.763214", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 17964, "nb_individuals": 0, "nb_properties": 46, "max_depth": 34, "max_children": 2495, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PROPREO", "name": "Proteomics Data and Process Provenance Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 689, "download_url": "media/ontologies/PROPREO/2/propreo.owl", "submission_id": 2, "domain": null, "description": "A comprehensive proteomics data and process provenance ontology.", "documentation": "http://knoesis.wright.edu/research/semsci/application_domain/sem_life_sci/glycomics/resources/ontologies/propreo/", "publication": "http://knoesis.wright.edu/research/semsci/application_domain/sem_life_sci/glycomics/resources/ontologies/propreo/", "publications": null, "products": null, "taxon": null, "date_released": "2015-08-22T01:05:51", "date_created": "2015-08-22T01:05:51", "home_page": "http://knoesis.wright.edu/research/semsci/application_domain/sem_life_sci/glycomics/resources/ontologies/propreo/", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 401, "nb_individuals": 46, "nb_properties": 39, "max_depth": 7, "max_children": 25, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RBO", "name": "Radiation Biology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8030, "download_url": "media/ontologies/RBO/41/rbo.owl", "submission_id": 41, "domain": "environment", "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "rbo.owl", "name": "Radiation Biology Ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/rbo.owl" }, { "id": "rbo.obo", "name": "Radiation Biology Ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/rbo.obo" }, { "id": "rbo.json", "name": "Radiation Biology Ontology additional release in OBOJSon format", "ontology_purl": "http://purl.obolibrary.org/obo/rbo.json" }, { "id": "rbo/rbo-base.owl", "name": "Radiation Biology Ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/rbo/rbo-base.owl" }, { "id": "rbo/rbo-base.obo", "name": "Radiation Biology Ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/rbo/rbo-base.obo" }, { "id": "rbo/rbo-base.json", "name": "Radiation Biology Ontology additional release in OBOJSon format", "ontology_purl": "http://purl.obolibrary.org/obo/rbo/rbo-base.json" } ], "taxon": null, "date_released": "2026-03-16T13:27:29.298767", "date_created": "2026-03-16T13:27:29.298770", "home_page": "https://github.com/Radiobiology-Informatics-Consortium/RBO", "version": null, "has_ontology_language": "OWL", "nb_classes": 9210, "nb_individuals": 1009, "nb_properties": 314, "max_depth": 39, "max_children": 266, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "fcc9ec1747c30a665ae5c9571b2d7945" } }, { "acronym": "RBO-LKK", "name": "RBO", "status": "Classified", "topics": [ "radiation", "space to some extent" ], "species": [ "Multiple" ], "submission": { "id": 4840, "download_url": "media/ontologies/RBO-LKK/3/rbo-lkk.owl", "submission_id": 3, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-01-20T15:41:48.642905", "date_created": "2022-01-20T15:41:48.642884", "home_page": null, "version": "0.0.test3", "has_ontology_language": "OWL", "nb_classes": 4004, "nb_individuals": 350, "nb_properties": 244, "max_depth": 37, "max_children": 175, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RCTV2", "name": "Read Clinical Terminology Version 2", "status": "Classified", "topics": null, "species": null, "submission": { "id": 24, "download_url": "media/ontologies/RCTV2/1/rctv2.owl", "submission_id": 1, "domain": null, "description": "NHS UK Read Codes Version 2", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-04-11T00:00:00", "date_created": "2016-04-08T09:01:27", "home_page": null, "version": "2015", "has_ontology_language": "OWL", "nb_classes": 88854, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 62, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RNPRIO", "name": "Research Network and Patient Registry Inventory Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 775, "download_url": "media/ontologies/RNPRIO/1/rnprio.owl", "submission_id": 1, "domain": null, "description": "Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-06-07T07:00:00", "date_created": "2013-06-07T23:42:37", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 79, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RNRMU", "name": "RNRMU", "status": "Classified", "topics": null, "species": null, "submission": { "id": 205, "download_url": "media/ontologies/RNRMU/1/rnrmu.owl", "submission_id": 1, "domain": null, "description": "The terms of RNRMU", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-09-30T00:00:00", "date_created": "2014-07-04T07:19:21", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 2310, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 67, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ROO", "name": "Radiation Oncology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 162, "download_url": "media/ontologies/ROO/3/roo.owl", "submission_id": 3, "domain": null, "description": "The Radiation Oncology Ontology aims to cover the radiation oncology domain with a strong focus on re-using existing ontologies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-07-17T00:00:00", "date_created": "2015-07-17T19:41:09", "home_page": "http://www.cancerdata.org/roo", "version": "0.3", "has_ontology_language": "OWL", "nb_classes": 1183, "nb_individuals": 0, "nb_properties": 211, "max_depth": 10, "max_children": 249, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ROS", "name": "Radiation Oncology Structures Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 242, "download_url": "media/ontologies/ROS/6/ros.owl", "submission_id": 6, "domain": null, "description": "This ontology describes commonly contoured (anatomical and treatment planning) structures for radiation treatment planning. 22000 structures labels (created over a 16 years period in our radiation department) were extracted, classified and categorized to produce this ontology. Lymph nodes delineation international guidelines are provided.\r\n\r\nThis ontology was created to ease and standardize the integration of radiation oncology data into clinical datawarehouses for multicentric studies. The high granularity of this ontology will allow precise dosimetric evaluations.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-07-27T00:00:00", "date_created": "2017-07-27T08:03:48", "home_page": "http://www.twitter.com/jebibault", "version": "1.2.2", "has_ontology_language": "OWL", "nb_classes": 416, "nb_individuals": 0, "nb_properties": 2, "max_depth": 7, "max_children": 14, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RPO", "name": "Resource of Asian Primary Immunodeficiency Diseases (RAPID) Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 32, "download_url": "media/ontologies/RPO/2/rpo.owl", "submission_id": 2, "domain": null, "description": "RAPID phenotype ontology presents controlled vocabulary of ontology class structures and entities of observed phenotypic terms for primary immunodeficiency diseases (PIDs) that facilitate global sharing and free exchange of PID data with users’ communities", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-08-14T07:00:00", "date_created": "2012-08-14T05:42:17", "home_page": "http://rapid.rcai.riken.jp/ontology/v1.0/phenomer.php", "version": "Version 1.0", "has_ontology_language": "OWL", "nb_classes": 1545, "nb_individuals": 0, "nb_properties": 166, "max_depth": 5, "max_children": 1371, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SK", "name": "Digital Forensic", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3142, "download_url": "media/ontologies/SK/1/sk.owl", "submission_id": 1, "domain": null, "description": "An abstraction based approach.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-11-28T00:00:00", "date_created": "2019-11-28T15:12:45", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 38, "nb_individuals": 4, "nb_properties": 4, "max_depth": 5, "max_children": 8, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "S4EHAW", "name": "SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7924, "download_url": "media/ontologies/S4EHAW/1/s4ehaw.owl", "submission_id": 1, "domain": null, "description": "The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. \nSAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both:\n - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e.\n - Use case 1 ?elderly at home monitoring and support?,\n - Use case 2 ?monitoring and support of healthy lifestyles for citizens?,\n - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?.\n - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification.\n\nSAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology.\n\nFor semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure).\nFor embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e.\n - Use case 1 “elderly at home monitoring and support”,\n - Use case 2 “monitoring and support of healthy lifestyles for citizens”,\n - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”.\n - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2020-02-01T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "v1.1.1", "has_ontology_language": "OWL", "nb_classes": 137, "nb_individuals": 38, "nb_properties": 73, "max_depth": 4, "max_children": 40, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SAO", "name": "Subcellular Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 515, "download_url": "media/ontologies/SAO/2/sao.owl", "submission_id": 2, "domain": null, "description": "SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.", "documentation": "http://ccdb.ucsd.edu/SAO", "publication": "http://ccdb.ucsd.edu/SAO", "publications": null, "products": null, "taxon": null, "date_released": "2015-08-22T01:06:37", "date_created": "2015-08-22T01:06:37", "home_page": "http://ccdb.ucsd.edu/SAO", "version": "Version 1.2", "has_ontology_language": "OWL", "nb_classes": 764, "nb_individuals": 0, "nb_properties": 81, "max_depth": 10, "max_children": 34, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SARSMUTONTO", "name": "Ontology for SARS-CoV-2 lineages and mutations", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5646, "download_url": "media/ontologies/SARSMUTONTO/7/sarsmutonto.owl", "submission_id": 7, "domain": null, "description": "The SARSMutOnto ontology provides a list of all SARS-CoV-2 Pango lineages while maintaining their hierarchy (lineage/sublineage) describing in detail all lineage mutations", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-02-02T02:22:36", "date_created": "2023-02-02T02:22:39", "home_page": "https://github.com/jbakkas/SARSMutOnto", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 2388, "nb_individuals": 3100, "nb_properties": 2, "max_depth": 18, "max_children": 456, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SASAP", "name": "The State of Alaska's Salmon and People Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5273, "download_url": "media/ontologies/SASAP/2/sasap.owl", "submission_id": 2, "domain": null, "description": "An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities.", "documentation": "https://github.com/DataONEorg/sem-prov-ontologies", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-07-22T00:00:00", "date_created": "2022-08-06T02:30:37", "home_page": "https://github.com/DataONEorg/sem-prov-ontologies", "version": "0.1.1", "has_ontology_language": "OWL", "nb_classes": 30, "nb_individuals": 221, "nb_properties": 12, "max_depth": 3, "max_children": 20, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SBO", "name": "Systems Biology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5854, "download_url": "media/ontologies/SBO/816/sbo.owl", "submission_id": 816, "domain": "chemistry and biochemistry", "description": "Terms commonly used in Systems Biology, and in particular in computational modeling.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "sbo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/sbo.owl" } ], "taxon": null, "date_released": "2023-06-05T16:17:43.842437", "date_created": "2023-06-05T16:17:43.842448", "home_page": "http://www.ebi.ac.uk/sbo/", "version": null, "has_ontology_language": "OWL", "nb_classes": 695, "nb_individuals": 0, "nb_properties": 1, "max_depth": 10, "max_children": 32, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "af8224034238aba1be4ee361ff9ddefa" } }, { "acronym": "SBOL", "name": "Synthetic Biology Open Language Visual Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 514, "download_url": "media/ontologies/SBOL/2/sbol.obo", "submission_id": 2, "domain": null, "description": "Synthetic Biology Open Language Visual (SBOLv) is an ontology to represent standardized graphical notation for synthetic biology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-04-26T07:00:00", "date_created": "2013-07-18T19:00:30", "home_page": "www.sbolstandard.org/visual", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 41, "nb_individuals": 0, "nb_properties": 4, "max_depth": 2, "max_children": 18, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SHR", "name": "Student Health Record Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 487, "download_url": "media/ontologies/SHR/3/shr.owl", "submission_id": 3, "domain": null, "description": "The goal of SHR project is to develop an ontology for the description of student health records. Student health records are created for entering college students in order to provide better health services will be formed. This file contains various sections such as history of disease, family history of disease, public examinations and ... .", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-09-29T07:00:00", "date_created": "2015-01-09T12:36:20", "home_page": "http://www.shojaee.com/shr/", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 295, "nb_individuals": 0, "nb_properties": 38, "max_depth": 4, "max_children": 23, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SIBO", "name": "Social Insect Behavior Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7000, "download_url": "media/ontologies/SIBO/3/sibo.owl", "submission_id": 3, "domain": "biological systems", "description": "Social Behavior in insects", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "sibo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/sibo.owl" }, { "id": "sibo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/sibo.obo" } ], "taxon": null, "date_released": "2024-11-18T14:54:48.795465", "date_created": "2024-11-18T14:54:48.795472", "home_page": "https://github.com/obophenotype/sibo", "version": null, "has_ontology_language": "OWL", "nb_classes": 525, "nb_individuals": 0, "nb_properties": 7, "max_depth": 5, "max_children": 158, "avg_children": 16, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "43acf0584e784f5397373fd2fc83602c" } }, { "acronym": "ISSVA", "name": "International Society for the Study of Vascular Anomalies (ISSVA) Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4452, "download_url": "media/ontologies/ISSVA/5/issva.owl", "submission_id": 5, "domain": null, "description": "The International Society for the Study of Vascular Anomalies (ISSVA) is a multidisciplinary international society of physicians, scientists, and health care providers united by an interest in vascular anomalies. The Society aims to promote the highest standards of care for patients with vascular anomalies by advancing clinical and scientific knowledge concerning causes, diagnosis and treatment, and by education of physicians, health care providers, patients and the community. The Society encourages the free flow of information between its members and interested groups, through workshop meetings and teaching programs, and by the dissemination of a classification scheme and pertinent scientific data.\r\n\r\nThe updated classification was approved at the May, 2018 General Assembly in Amsterdam, the Netherlands and can be found at https://www.issva.org/classification.\r\n\r\nWhat is the ISSVA Ontology?\r\n\r\nThe ISSVA ontology has been created to represent a sharable semantic data model of the ISSVA classification. This ontological representation of the ISSVA classification is machine-readable and facilitates interoperability between systems that capture data about vascular anomalies. It is structured hierarchically and contains all concepts of the ISSVA classification and the relationships between them. The ontology is available in the Web Ontology Language (OWL) format, and can be browsed and downloaded online: https://bioportal.bioontology.org/ontologies/ISSVA\r\n\r\nHow to Use the ISSVA Ontology?\r\n\r\nThe ISSVA ontology does not substitute the ISSVA classification, instead, it should be used as an additional component to facilitate interoperability. Every concept in the ISSVA ontology has a unique code that should be attached to the corresponding data element. In the context of databases, the ISSVA ontology codes could be added as an extra column to the existing data. \r\n\r\nMappings to Other Ontologies?\r\n\r\nThe ISSVA ontology contains machine-readable mappings to equivalent concepts in other ontologies, namely: the Orphanet Rare Disease Ontology (ORDO), SNOMED Clinical Terms (SNOMED CT), National Cancer Institute thesaurus (NCIT), and the Human Phenotype Ontology (HPO). This means that data annotated with codes from the ISSVA ontology are interoperable with data annotated with the aforementioned ontologies, without any extra effort, as long as there exists a mapping between the concepts.\r\n\r\nIssue Reporting\r\n\r\nPlease contact ISSVA at info@issva.org in case you have any issues and/or feature requests for the ISSVA ontology. The ontology can then be updated accordingly.", "documentation": "https://github.com/brunasv/ISSVA", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-02-19T00:00:00", "date_created": "2021-04-29T16:05:21", "home_page": "https://www.issva.org", "version": "1.1.3", "has_ontology_language": "OWL", "nb_classes": 194, "nb_individuals": 5, "nb_properties": 1, "max_depth": 8, "max_children": 40, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NMOSP", "name": "NeuroMorpho.Org species ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 883, "download_url": "media/ontologies/NMOSP/18/nmosp.owl", "submission_id": 18, "domain": null, "description": "The species ontology of NeuroMorpho.Org was updated (OntoSearch v1.3) to map the new species and strains added in NeuroMorpho.Org v6.3 release.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T02:12:14", "date_created": "2017-11-28T02:12:14", "home_page": "NeuroMorpho.Org", "version": "1.3", "has_ontology_language": "OWL", "nb_classes": 1562, "nb_individuals": 191, "nb_properties": 0, "max_depth": 40, "max_children": 408, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NPOKB", "name": "Neuron Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8063, "download_url": "media/ontologies/NPOKB/22/npokb.owl", "submission_id": 22, "domain": null, "description": "An ontology of neuron types based on the phenotypic dimensions of cells that can be measure experimentally.", "documentation": "https://github.com/SciCrunch/NIF-Ontology/blob/master/docs/Neurons.md", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-20T01:10:24", "date_created": "2026-03-19T00:00:00", "home_page": "https://github.com/SciCrunch/NIF-Ontology", "version": "2026-03-19", "has_ontology_language": "OWL", "nb_classes": 6875, "nb_individuals": 19, "nb_properties": 97, "max_depth": 34, "max_children": 1327, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RDAU", "name": "RDA unconstrained properties", "status": "Classified", "topics": null, "species": null, "submission": { "id": 222, "download_url": "media/ontologies/RDAU/1/rdau.owl", "submission_id": 1, "domain": null, "description": "The Unconstrained properties element set consists of properties representing the attributes and relationships of all of the RDA entities. Each property in the element set has semantics which are independent of the FRBR model and has no specified domain or range.\r\n\r\nThe Unconstrained properties are intended for use in applications that do not require the FRBR semantics.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-08-01T00:00:00", "date_created": "2017-08-29T16:09:49", "home_page": "http://www.rdaregistry.info/Elements/u/", "version": null, "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 2, "nb_properties": 582, "max_depth": 0, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RDFS", "name": "The RDF Schema vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7092, "download_url": "media/ontologies/RDFS/4/rdfs.owl", "submission_id": 4, "domain": null, "description": "RDF Schema provides a data-modelling vocabulary for RDF data", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-12-19T02:14:22", "date_created": "2024-12-19T02:14:23", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 7, "nb_individuals": 0, "nb_properties": 5, "max_depth": 3, "max_children": 3, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RDO", "name": "Reusable Biodiversity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4647, "download_url": "media/ontologies/RDO/1/rdo.owl", "submission_id": 1, "domain": null, "description": "Facilitating Biodiversity information ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-02T00:00:00", "date_created": "2021-06-02T12:26:11", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 362, "nb_individuals": 3, "nb_properties": 13, "max_depth": 7, "max_children": 108, "avg_children": 89, "classifiable": true, "nb_inconsistent": 108, "indexed": true, "md5sum": null } }, { "acronym": "REGN_BRO", "name": "REGN_BRO", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5610, "download_url": "media/ontologies/REGN_BRO/1/regn_bro.owl", "submission_id": 1, "domain": null, "description": "A controlled terminology of resources, which is used to improve the sensitivity and specificity of web searches.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-01-12T00:00:00", "date_created": "2023-01-12T14:19:05", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 486, "nb_individuals": 80, "nb_properties": 30, "max_depth": 8, "max_children": 65, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "REGN_GO", "name": "REGN_GO", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5611, "download_url": "media/ontologies/REGN_GO/1/regn_go.owl", "submission_id": 1, "domain": null, "description": "Provides structured controlled vocabularies for the annotation of gene products with respect to their molecular function, cellular component, and biological role. The Gene Ontology consists of three Vocabularies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-01-12T00:00:00", "date_created": "2023-01-12T14:35:54", "home_page": null, "version": "2023-01-01", "has_ontology_language": "OWL", "nb_classes": 51063, "nb_individuals": 0, "nb_properties": 9, "max_depth": 12, "max_children": 7818, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "REPO", "name": "Reproductive Trait and Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 531, "download_url": "media/ontologies/REPO/3/repo.owl", "submission_id": 3, "domain": null, "description": "Ontology for livestock reproductive traits and phenotypes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-10-12T07:00:00", "date_created": "2011-10-12T13:06:04", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 96, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 14, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WB-PHENOTYPE", "name": "C. elegans Phenotype Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 852, "download_url": "media/ontologies/WB-PHENOTYPE/267/wb-phenotype.obo", "submission_id": 267, "domain": null, "description": "A structured controlled vocabulary of <i>Caenorhabditis elegans</i> phenotypes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-23T03:44:14", "date_created": "2017-11-23T03:44:14", "home_page": "http://www.wormbase.org/", "version": "releases/2017-11-22", "has_ontology_language": "OBO", "nb_classes": 2470, "nb_individuals": 0, "nb_properties": 0, "max_depth": 11, "max_children": 29, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SATO", "name": "SATO (IDEAS expAnded wiTh BCIO): workflow for designers of patient-centered mobile health behaviour change intervention applications", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5508, "download_url": "media/ontologies/SATO/2/sato.owl", "submission_id": 2, "domain": null, "description": "Designing effective theory-driven digital behaviour change interventions (DBCI) is a challenging task. To ease the design process, and assist with knowledge sharing and evaluation of the DBCI, we propose the SATO (IDEASexpAnded wiTh BCIO) design workflow based on the IDEAS (Integrate, Design, Assess, and Share) framework and aligned with the Behaviour Change Intervention Ontology (BCIO). BCIO is a structural representation of the knowledge in behaviour change domain supporting evaluation of behaviour change interventions (BCIs) but it is not straightforward to utilise it during DBCI design. IDEAS (Integrate, Design, Assess, and Share) framework guides multi-disciplinary teams through the mobile health (mHealth) application development life-cycle but it is not aligned with BCIO entities. SATO couples BCIO entities with workflow steps and extends IDEAS Integrate stage with consideration of customisation and personalisation.\r\nThe SATO ontology provides the extensions of BCIO along with examples of a BCI Scenario of Fatigue Reduction.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-11-17T00:00:00", "date_created": "2022-11-26T21:18:17", "home_page": null, "version": "v2", "has_ontology_language": "OWL", "nb_classes": 773, "nb_individuals": 1, "nb_properties": 33, "max_depth": 12, "max_children": 24, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MO", "name": "Microarray and Gene Expression Data Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 291, "download_url": "media/ontologies/MO/1/mo.owl", "submission_id": 1, "domain": null, "description": "Concepts, definitions, terms, and resources for standardized description of a microarray experiment in support of MAGE v.1.", "documentation": "http://mged.sourceforge.net/software/downloads.php", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-19T00:00:00", "date_created": "2009-05-21T17:24:23", "home_page": "http://mged.sourceforge.net/ontologies/MGEDontology.php", "version": "1.3.1.1", "has_ontology_language": "OWL", "nb_classes": 236, "nb_individuals": 698, "nb_properties": 127, "max_depth": 8, "max_children": 31, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WB-BT", "name": "C. elegans Gross Anatomy Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 509, "download_url": "media/ontologies/WB-BT/116/wb-bt.obo", "submission_id": 116, "domain": null, "description": "A structured controlled vocabulary of the anatomy of <i>Caenorhabditis elegans</i>.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-29T01:24:05", "date_created": "2016-06-29T01:24:05", "home_page": "http://www.wormbase.org/", "version": "2016-06-01", "has_ontology_language": "OBO", "nb_classes": 7601, "nb_individuals": 0, "nb_properties": 6, "max_depth": 8, "max_children": 2755, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MPO", "name": "Microbial Phenotype Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 382, "download_url": "media/ontologies/MPO/7/mpo.owl", "submission_id": 7, "domain": null, "description": "An ontology for describing microbial phenotypes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-02-20T00:00:00", "date_created": "2014-02-20T08:59:20", "home_page": null, "version": "Version 0.5 alpha", "has_ontology_language": "OWL", "nb_classes": 337, "nb_individuals": 120, "nb_properties": 132, "max_depth": 8, "max_children": 24, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RETO", "name": "Regulation of Transcription Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 610, "download_url": "media/ontologies/RETO/7/reto.obo", "submission_id": 7, "domain": null, "description": "An application ontology for the domain of gene transcription regulation. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI and orthological properties from RO and SIO.", "documentation": null, "publication": "http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-014-0386-y", "publications": null, "products": null, "taxon": null, "date_released": "2015-12-16T00:00:00", "date_created": "2015-12-16T08:32:01", "home_page": "http://www.semantic-systems-biology.org/apo/", "version": "2015", "has_ontology_language": "OBO", "nb_classes": 148637, "nb_individuals": 0, "nb_properties": 13, "max_depth": 21, "max_children": 47109, "avg_children": 48, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "REX", "name": "Physico-chemical process", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1060, "download_url": "media/ontologies/REX/1/rex.owl", "submission_id": 1, "domain": null, "description": "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "rex.owl", "ontology_purl": "http://purl.obolibrary.org/obo/rex.owl" } ], "taxon": null, "date_released": "2017-12-13T11:22:15.739042", "date_created": "2017-12-13T11:22:15.739064", "home_page": "", "version": null, "has_ontology_language": "OWL", "nb_classes": 552, "nb_individuals": 0, "nb_properties": 6, "max_depth": 12, "max_children": 28, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7bb85e3c19e558a08f323357d36f448b" } }, { "acronym": "SALMON", "name": "Salmon Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 5271, "download_url": "media/ontologies/SALMON/2/salmon.owl", "submission_id": 2, "domain": null, "description": "An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms.", "documentation": "https://github.com/DataONEorg/sem-prov-ontologies/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-07-22T00:00:00", "date_created": "2022-08-06T02:30:48", "home_page": "https://github.com/DataONEorg/sem-prov-ontologies/", "version": "0.3.1", "has_ontology_language": "OWL", "nb_classes": 1198, "nb_individuals": 42, "nb_properties": 82, "max_depth": 11, "max_children": 36, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "REXO", "name": "Regulation of Gene Expression Ontolology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 297, "download_url": "media/ontologies/REXO/6/rexo.owl", "submission_id": 6, "domain": null, "description": "An application ontology for the domain of gene expression regulation. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, and orthology relations using ontological properties from RO and ISO.", "documentation": null, "publication": "http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-014-0386-y", "publications": null, "products": null, "taxon": null, "date_released": "2015-12-16T00:00:00", "date_created": "2015-12-16T08:32:08", "home_page": "http://www.semantic-systems-biology.org/apo", "version": "2015", "has_ontology_language": "OWL", "nb_classes": 158239, "nb_individuals": 149084, "nb_properties": 12, "max_depth": 21, "max_children": 48984, "avg_children": 49, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ROCKNROLLTEST", "name": "ROCK-N-ROLL-TEST", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4394, "download_url": "media/ontologies/ROCKNROLLTEST/2/rocknrolltest.skos", "submission_id": 2, "domain": null, "description": "This Vocabulary describes some few terms of high level geologic concept hierarchy. This vocabulary is not complete and half randomly made up, but based on the USGS North American Geological Map Data Model. It is a test before the M4M workshop.\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-03-31T01:20:43", "date_created": "2021-03-31T01:20:44", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 1, "nb_individuals": 1, "nb_properties": 0, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OF", "name": "OntoFood", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 641, "download_url": "media/ontologies/OF/1/of.owl", "submission_id": 1, "domain": null, "description": "This is an ontology with SWRL rules of nutrition for diabetic patient. We can import the value of Blood Sugar and Weight by .xls and use that like instance for generate the rules with rule engine Jess.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-12-26T00:00:00", "date_created": "2015-12-26T09:18:36", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 292, "nb_individuals": 206, "nb_properties": 48, "max_depth": 12, "max_children": 22, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SCO-U", "name": "Sustainability Core Ontology - Segment U", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 7672, "download_url": "media/ontologies/SCO-U/5/sco-u.owl", "submission_id": 5, "domain": null, "description": "SCO is a middle-level ontology, representing the major theoretical challenges to sustainability:\r\n1) The polysemy of the term sustainability.\r\n2) The relationship between sustainability and sustainable development.\r\n3) The complexity underlying sustainability.\r\nSCO aims to play a pivotal role in harmonizing and integrating top-level and domain ontologies regarding sustainability., SCO V1.1.0 aligns with two Top-Level Ontologies (TLOs), Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO). SCO V1.1.0 is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO (as SCO V1.0.0). SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). This file provides SCO-U segment.\r\n\r\nReferences – TLOs: \r\nhttps://github.com/BFO-ontology/BFO-2020 \r\nhttps://ontouml.readthedocs.io/en/latest/intro/ufo.html \r\nhttps://nemo-ufes.github.io/gufo/, representing the major theoretical challenges to sustainability:\n1) The polysemy of the term sustainability.\n2) The relationship between sustainability and sustainable development.\n3) The complexity underlying sustainability.\nSCO aims to play a pivotal role in harmonizing and integrating top-level and domain ontologies regarding sustainability., Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO). SCO V1.1.0 is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO (as SCO V1.0.0). SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). This file provides SCO-U segment.\n\nReferences – TLOs: \nhttps://github.com/BFO-ontology/BFO-2020 \nhttps://ontouml.readthedocs.io/en/latest/intro/ufo.html \nhttps://nemo-ufes.github.io/gufo/", "documentation": "https://www.w3id.org/sco/sco-u-b-mapping", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-10-17T00:00:00", "date_created": "2025-10-17T00:00:00", "home_page": "https://www.w3id.org/sco/repo", "version": "Version 1.1.0. ; segment U.", "has_ontology_language": "OWL", "nb_classes": 113, "nb_individuals": 63, "nb_properties": 50, "max_depth": 9, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SciRes", "name": "Scientific Research Resources", "status": "Classified", "topics": null, "species": null, "submission": { "id": 648, "download_url": "media/ontologies/SciRes/1/scires.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-public-1.5.owl. It contains terms related to scientific research resources that are included in the vivo ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T11:01:57", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 20, "nb_individuals": 0, "nb_properties": 10, "max_depth": 4, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORTH", "name": "Orthology Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 608, "download_url": "media/ontologies/ORTH/4/orth.owl", "submission_id": 4, "domain": null, "description": "Orthology Ontology", "documentation": "https://github.com/qfo/OrthologyOntology", "publication": "http://www.jbiomedsem.com/content/7/1/34", "publications": null, "products": null, "taxon": null, "date_released": "2016-04-04T01:10:13", "date_created": "2016-04-04T01:10:14", "home_page": "https://github.com/qfo/OrthologyOntology", "version": "2015-11-27", "has_ontology_language": "OWL", "nb_classes": 4715, "nb_individuals": 610, "nb_properties": 845, "max_depth": 37, "max_children": 118, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SCTO", "name": "SNOMED CT Standard Ontology Based on the Ontology for General Medical Science", "status": "Classified", "topics": null, "species": null, "submission": { "id": 846, "download_url": "media/ontologies/SCTO/14/scto.owl", "submission_id": 14, "domain": null, "description": "The Systematized Nomenclature of Medicine Clinical Term Upper-Level Ontology (SCTO) attempts to create a basic OWL 2 ontology for SNOMED CT terminology. The ontology is built based on the Ontology of General Medical Science (OGMS). This ontology implements the SNOMED CT concept model by adding the appropriate axioms to its top-level concepts. The resulting ontology can prevent redundancies and inconsistencies in this large terminology. Moreover, the terminology maintenance can become more accurate. Finally, SNOMED CT can be used in a healthcare environment to create more complex post-coordinated expressions and constraints in a more accurate manner.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-21T00:00:00", "date_created": "2017-11-21T12:30:34", "home_page": null, "version": "21-11-2017", "has_ontology_language": "OWL", "nb_classes": 304, "nb_individuals": 18, "nb_properties": 8, "max_depth": 12, "max_children": 44, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SDO", "name": "Sleep Domain Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 734, "download_url": "media/ontologies/SDO/4/sdo.owl", "submission_id": 4, "domain": null, "description": "An application ontology for the domain of Sleep Medicine. \r\n", "documentation": "https://mimi.case.edu/concepts", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-23T00:00:00", "date_created": "2015-06-24T00:11:29", "home_page": "https://mimi.case.edu/concepts", "version": "Last modification: Feb. 11, 2013 Sivaram Arabandi", "has_ontology_language": "OWL", "nb_classes": 1382, "nb_individuals": 59, "nb_properties": 100, "max_depth": 19, "max_children": 48, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOSINASC", "name": "Ontology of Information System on Live Births", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 3866, "download_url": "media/ontologies/ONTOSINASC/1/ontosinasc.owl", "submission_id": 1, "domain": null, "description": "[pt-br] A Ontologia do SINASC foi desenvolvida no contexto do projeto DIASUS. Ela buscou resgatar a estrutura presente na ficha de preenchimento da Declaração de Nascido Vivo - DN, do Sistema de Informação de Nascidos Vivos - SINASC, do Sistema Único de Saúde, do Brasil. \r\n\r\n[en] The SINASC Ontology was developed in the context of DIASUS project. This ontology intent to rescue the data structure presented in Live Birth Certificate form, from Information System on Live Births - SINASC, from Brazilian Public Health System - SUS. ", "documentation": "https://gitlab.com/beliefchangetools/diasus/-/tree/master/OF_SINASC", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-08-12T00:00:00", "date_created": "2020-08-12T23:20:05", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 11, "nb_individuals": 0, "nb_properties": 34, "max_depth": 2, "max_children": 10, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SDPV", "name": "Syndrome Differentiation of Psoriasis Vulgaris in Traditional Chinese Medicine", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4215, "download_url": "media/ontologies/SDPV/1/sdpv.owl", "submission_id": 1, "domain": null, "description": "an ontology for syndrome differentiation and treatment of Psoriasis Vulgaris in Traditional Chinese Medicine", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-01-19T00:00:00", "date_created": "2021-01-20T00:06:23", "home_page": null, "version": "Version 1.0", "has_ontology_language": "OWL", "nb_classes": 99, "nb_individuals": 275, "nb_properties": 56, "max_depth": 8, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SEDI", "name": "Semantic DICOM Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 325, "download_url": "media/ontologies/SEDI/6/sedi.owl", "submission_id": 6, "domain": null, "description": "An ontology for DICOM as used in the SeDI project.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-10T00:00:00", "date_created": "2015-06-10T15:12:14", "home_page": "http://semantic-dicom.org", "version": "0.6 alpha", "has_ontology_language": "OWL", "nb_classes": 1423, "nb_individuals": 0, "nb_properties": 4606, "max_depth": 2, "max_children": 490, "avg_children": 49, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SENSO", "name": "Sensitive Data Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4650, "download_url": "media/ontologies/SENSO/1/senso.owl", "submission_id": 1, "domain": null, "description": "The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing.", "documentation": "https://github.com/DataONEorg/sem-prov-ontologies", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-10-13T00:00:00", "date_created": "2021-10-14T00:13:13", "home_page": "https://github.com/DataONEorg/sem-prov-ontologies", "version": "Version 0.1.0", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 0, "nb_properties": 1, "max_depth": 2, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "skos", "name": "SKOS (concepts)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 36, "download_url": "media/ontologies/skos/1/skos.owl", "submission_id": 1, "domain": null, "description": "This file is imported by vivo-core-1.5.owl. It contains terms relating to concepts from the http://www.w3.org/2004/02/skos/core# namespace of the SKOS (Simple Knowledge Organization System) ontology that are included in the vivo ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-07-12T07:00:00", "date_created": "2012-08-31T10:33:06", "home_page": "http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 0, "nb_properties": 3, "max_depth": 0, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SL_DIS", "name": "Sleep Disorders ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7559, "download_url": "media/ontologies/SL_DIS/2/sl_dis.owl", "submission_id": 2, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-08-25T00:00:00", "date_created": "2025-08-25T00:00:00", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 177, "nb_individuals": 248, "nb_properties": 4, "max_depth": 5, "max_children": 10, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SLEEP", "name": "SLEEP ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7039, "download_url": "media/ontologies/SLEEP/1/sleep.owl", "submission_id": 1, "domain": null, "description": "The SLEEP ontology aims to facilitate the collection of PGHD related to sleep patterns and behaviors. It was created by organizing sleep-related terms gathered from sleep questionnaires and specialized literature.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-12-04T00:00:00", "date_created": "2024-12-05T01:43:59", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 104, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SLSO", "name": "Space Life Sciences Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7810, "download_url": "media/ontologies/SLSO/13/slso.owl", "submission_id": 13, "domain": "investigations", "description": "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "slso.owl", "ontology_purl": "http://purl.obolibrary.org/obo/slso.owl" }, { "id": "slso.obo", "ontology_purl": "http://purl.obolibrary.org/obo/slso.obo" }, { "id": "slso.json", "ontology_purl": "http://purl.obolibrary.org/obo/slso.json" }, { "id": "slso-base.owl", "description": "Includes axioms linking to other ontologies, but no imports of those ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/slso-base.owl" } ], "taxon": null, "date_released": "2025-12-15T15:41:03.613154", "date_created": "2025-12-15T15:41:03.613156", "home_page": "https://github.com/nasa/LSDAO", "version": null, "has_ontology_language": "OWL", "nb_classes": 3979, "nb_individuals": 977, "nb_properties": 614, "max_depth": 37, "max_children": 72, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "1cba0dbaa620b70fef2beb2777d288b1" } }, { "acronym": "SMARTLHSONTOV1", "name": "SMARTLHSONTO V2", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7146, "download_url": "media/ontologies/SMARTLHSONTOV1/4/smartlhsontov1.owl", "submission_id": 4, "domain": null, "description": "SMARTLHSONTO is an ontology for Learning Health System Framework covering the 12 top pillars (Value Creation and Benefits, Evaluation and Methodlogy, Ethics and Oversight, Care Delivery and Organisational Strategies, Community and Patient Engagement, Culture and Change Management, Governance and Leadership, Research and Education, Workforce and Capacity Building, Data and Technology, Learning Health Systems, LHS Frameworks) , their subclass and inter-relationship between the pillars and subclass. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-01-24T00:00:00", "date_created": "2025-01-24T07:14:44", "home_page": "https://bioportal.bioontology.org/ontologies/SMARTLHSONTO", "version": "4", "has_ontology_language": "OWL", "nb_classes": 452, "nb_individuals": 0, "nb_properties": 123, "max_depth": 8, "max_children": 16, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SMASHBIOMARKER", "name": "SMASH ontology, Biomarker Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 305, "download_url": "media/ontologies/SMASHBIOMARKER/4/smashbiomarker.owl", "submission_id": 4, "domain": null, "description": "The SMASH (Semantic Mining of Activity, Social, and Health data) system ontology describes concepts used in describing the semantic features of healthcare data and social networks. The SMASH system primarily addresses the research topic of sustained weight loss with continued intervention with frequent social contacts.\r\n\r\nBiomedical measures for users in SMASH ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-03T01:14:48", "date_created": "2015-06-03T01:14:48", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 97, "nb_individuals": 29, "nb_properties": 52, "max_depth": 4, "max_children": 9, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SMASHPHYSICAL", "name": "SMASH ontology, Physical Activity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 125, "download_url": "media/ontologies/SMASHPHYSICAL/4/smashphysical.owl", "submission_id": 4, "domain": null, "description": "The SMASH (Semantic Mining of Activity, Social, and Health data) system ontology describes concepts used in describing the semantic features of healthcare data and social networks. The SMASH system primarily addresses the research topic of sustained weight loss with continued intervention with frequent social contacts.\r\n\r\nPhysical activities for users in SMASH ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-03T01:14:49", "date_created": "2015-06-03T01:14:49", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 74, "nb_individuals": 29, "nb_properties": 51, "max_depth": 5, "max_children": 8, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SMASHSOCIAL", "name": "SMASH ontology, Social Activity Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 444, "download_url": "media/ontologies/SMASHSOCIAL/4/smashsocial.owl", "submission_id": 4, "domain": null, "description": "The SMASH (Semantic Mining of Activity, Social, and Health data) system ontology describes concepts used in describing the semantic features of healthcare data and social networks. The SMASH system primarily addresses the research topic of sustained weight loss with continued intervention with frequent social contacts.\r\n\r\nSocial activities for users in the SMASH ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-06-03T01:14:50", "date_created": "2015-06-03T01:14:50", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 108, "nb_individuals": 29, "nb_properties": 63, "max_depth": 7, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 2, "indexed": true, "md5sum": null } }, { "acronym": "SMD_NPLSM", "name": "Neoplasm_hamartoma", "status": "Classified", "topics": null, "species": null, "submission": { "id": 392, "download_url": "media/ontologies/SMD_NPLSM/1/smd_nplsm.owl", "submission_id": 1, "domain": null, "description": "subset of snomed-ct regarding neoplasm and hamartoma", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-11-07T08:00:00", "date_created": "2011-11-07T15:45:01", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 1595, "nb_individuals": 0, "nb_properties": 0, "max_depth": 9, "max_children": 397, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SNMD_BDY", "name": "Snomed, Body Structure", "status": "Classified", "topics": null, "species": null, "submission": { "id": 710, "download_url": "media/ontologies/SNMD_BDY/2/snmd_bdy.owl", "submission_id": 2, "domain": null, "description": "The Body Structure subtree in SNOMED-CT. It has been created in order to built a proper ontology for our project, ONCO-i2b2, through the NCBO Ontology Tools. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-04-23T07:00:00", "date_created": "2012-05-04T21:02:51", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 20227, "nb_individuals": 0, "nb_properties": 0, "max_depth": 30, "max_children": 93, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SNMI", "name": "Systematized Nomenclature of Medicine, International Version", "status": "Classified", "topics": null, "species": null, "submission": { "id": 752, "download_url": "media/ontologies/SNMI/9/snmi.umls", "submission_id": 9, "domain": null, "description": "Cote, Roger A., editor. Systematized Nomenclature of Human and Veterinary Medicine: SNOMED International. Northfield (IL): College of American Pathologists; Schaumburg (IL): American Veterinary Medical Association, Version 3.5, 1998.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:27:00", "date_created": "2017-02-06T21:27:00", "home_page": "", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 109150, "nb_individuals": 0, "nb_properties": 9, "max_depth": 7, "max_children": 3334, "avg_children": 23, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SNOMEDCT-MAS", "name": "SNOMED Morphologically Abnormal Structure", "status": "Classified", "topics": null, "species": null, "submission": { "id": 771, "download_url": "media/ontologies/SNOMEDCT-MAS/1/snomedct-mas.owl", "submission_id": 1, "domain": null, "description": "The Morphologically Abnormal Structure subtree of SNOMED CT", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-09-23T07:00:00", "date_created": "2010-09-24T01:45:34", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 4402, "nb_individuals": 0, "nb_properties": 1, "max_depth": 13, "max_children": 403, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SO", "name": "Sequence types and features ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7582, "download_url": "media/ontologies/SO/292/so.owl", "submission_id": 292, "domain": "chemistry and biochemistry", "description": "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/15892872", "title": "The Sequence Ontology: a tool for the unification of genome annotations." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/20226267", "title": "Evolution of the Sequence Ontology terms and relationships." } ], "products": [ { "id": "so.owl", "title": "Main SO OWL release", "ontology_purl": "http://purl.obolibrary.org/obo/so.owl" }, { "id": "so.obo", "title": "Main SO release in OBO Format", "ontology_purl": "http://purl.obolibrary.org/obo/so.obo" }, { "id": "so/subsets/SOFA.owl", "title": "Sequence Ontology Feature Annotation (SOFA) subset (OWL)", "description": "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3", "ontology_purl": "http://purl.obolibrary.org/obo/so/subsets/SOFA.owl" }, { "id": "so/subsets/SOFA.obo", "title": "Sequence Ontology Feature Annotation (SOFA) subset (OBO Format)", "description": "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3", "ontology_purl": "http://purl.obolibrary.org/obo/so/subsets/SOFA.obo" } ], "taxon": null, "date_released": "2025-09-15T12:49:07.813433", "date_created": "2025-09-15T12:49:07.813435", "home_page": "http://www.sequenceontology.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 2747, "nb_individuals": 0, "nb_properties": 50, "max_depth": 14, "max_children": 346, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "640d616769df013379c68d6a39663f98" } }, { "acronym": "SOCPRES", "name": "Social Prescribing Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2074, "download_url": "media/ontologies/SOCPRES/1/socpres.owl", "submission_id": 1, "domain": null, "description": "The social prescribing ontology specifies concepts associated to social prescribing practices and the well being of social prescribing recipients. The ontology will be primary used to harmonise data related social prescribing processes across various parts of the health system.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-12-10T00:00:00", "date_created": "2018-12-10T17:06:49", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 54, "nb_individuals": 0, "nb_properties": 1, "max_depth": 7, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OPDRONT", "name": "OPD Register Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4839, "download_url": "media/ontologies/OPDRONT/2/opdront.skos", "submission_id": 2, "domain": null, "description": "Vocabulary creation for OPD Register: MINISTRY OF HEALTH AND CHILD CARE", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-01-14T00:00:00", "date_created": "2022-01-14T21:48:48", "home_page": null, "version": "0.0.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 20, "nb_properties": 14, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SD3", "name": "Simulation Delivery and Documentation Deviations", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 236, "download_url": "media/ontologies/SD3/1/sd3.owl", "submission_id": 1, "domain": null, "description": "The taxonomy will facilitate quality assurance in scenario delivery, permit standardized descriptors of simulation delivery deviations, and enable researchers to quantify the impact that scenario delivery and documentation deviations have upon participant performance. Though created specifically for high-fidelity mannequin-based simulation, the taxonomy can be applied to other simulation modalities.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-04-27T00:00:00", "date_created": "2015-04-27T14:25:16", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 57, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OPDT", "name": "opd_test", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4793, "download_url": "media/ontologies/OPDT/1/opdt.skos", "submission_id": 1, "domain": null, "description": "opd test for group 2", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-12-23T00:00:00", "date_created": "2021-12-23T15:03:15", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 6, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PANET", "name": "PaN Experimental technique", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7695, "download_url": "media/ontologies/PANET/27/panet.owl", "submission_id": 27, "domain": null, "description": "The PaNET ontology provides a taxonomy and thesaurus of photon and neutron (PaN) experimental techniques, based mainly on accelerator-based light sources and neutron facilities. The primary use of the ontology is to enhance the FAIRness of PaN data catalogues services. The ontology defines specific techniques in terms of more general technique classes and provides synonyms and references.", "documentation": null, "publication": "['https://doi.org/10.5281/zenodo.4806026']", "publications": null, "products": null, "taxon": null, "date_released": "2025-10-21T00:00:00", "date_created": "2025-10-21T00:00:00", "home_page": null, "version": "1.3.0", "has_ontology_language": "OWL", "nb_classes": 508, "nb_individuals": 0, "nb_properties": 5, "max_depth": 10, "max_children": 15, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RVO", "name": "Research Variable Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2393, "download_url": "media/ontologies/RVO/2/rvo.owl", "submission_id": 2, "domain": null, "description": "RVO, Research Variable Ontology, proposes a schema that can be use to record empirical data analytics research and can be use as a knowledge-base to support knowledge exploration phase of a new analytics research to learn and get recommendation. RVO is designed around the research variables, which form the basis of the hypothesis that analysts test through building a model.", "documentation": "http://w3id.org/rv-ontology/info", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-03-22T01:15:38", "date_created": "2019-03-22T01:15:39", "home_page": "http://w3id.org/rv-ontology/info", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 5, "nb_properties": 17, "max_depth": 1, "max_children": 12, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "RXNO", "name": "Name Reaction Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5222, "download_url": "media/ontologies/RXNO/40/rxno.owl", "submission_id": 40, "domain": "chemistry and biochemistry", "description": "Connects organic name reactions to their roles in an organic synthesis and to processes in MOP", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "rxno.owl", "title": "Name Reaction Ontology", "ontology_purl": "http://purl.obolibrary.org/obo/rxno.owl" } ], "taxon": null, "date_released": "2022-07-11T12:46:59.513200", "date_created": "2022-07-11T12:46:59.513218", "home_page": "https://github.com/rsc-ontologies/rxno", "version": null, "has_ontology_language": "OWL", "nb_classes": 1019, "nb_individuals": 0, "nb_properties": 14, "max_depth": 9, "max_children": 53, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "87b6a75767c6f56a71a68b240352f92b" } }, { "acronym": "SCHEMA", "name": "Schema.org core and all extension vocabularies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 123, "download_url": "media/ontologies/SCHEMA/2/schema.owl", "submission_id": 2, "domain": null, "description": "A collection of schemas that webmasters can use to markup HTML pages in ways recognized by major search providers, and that can also be used for structured data interoperability (e.g. in JSON).", "documentation": "http://schema.org/docs/documents.html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-03-23T00:00:00", "date_created": "2017-05-20T00:20:58", "home_page": "http://schema.org/", "version": "3.2", "has_ontology_language": "OWL", "nb_classes": 780, "nb_individuals": 268, "nb_properties": 0, "max_depth": 5, "max_children": 56, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SCHEMAORG", "name": "Schema.org core and all extension vocabularies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1939, "download_url": "media/ontologies/SCHEMAORG/2/schemaorg.owl", "submission_id": 2, "domain": null, "description": "A collection of schemas that webmasters can use to markup HTML pages in ways recognized by major search providers, and that can also be used for structured data interoperability (e.g. in JSON).", "documentation": "https://schema.org/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-06-15T00:00:00", "date_created": "2018-10-11T18:50:58", "home_page": "https://schema.org/", "version": "3.4", "has_ontology_language": "OWL", "nb_classes": 822, "nb_individuals": 989, "nb_properties": 680, "max_depth": 6, "max_children": 59, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SPO", "name": "Skin Physiology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 289, "download_url": "media/ontologies/SPO/1/spo.owl", "submission_id": 1, "domain": null, "description": null, "documentation": "www.lboro.ac.uk", "publication": "www.lboro.ac.uk", "publications": null, "products": null, "taxon": null, "date_released": "2008-09-19T07:00:00", "date_created": "2008-09-19T05:35:09", "home_page": "www.lboro.ac.uk", "version": "2", "has_ontology_language": "OWL", "nb_classes": 339, "nb_individuals": 0, "nb_properties": 34, "max_depth": 9, "max_children": 16, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SP_ONTOLOGY", "name": "SmartPITeS Proyect Ontology for Complex Chronic Patients", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5741, "download_url": "media/ontologies/SP_ONTOLOGY/1/sp_ontology.owl", "submission_id": 1, "domain": null, "description": "The ontology developed for the SmartPITeS project contains decision rules established in clinical practice on which a software developed for clinical decision support for the pharmacological prescription and de-prescription of complex chronic patients is based. Specifically patients with atrial fibrillation under treatment with anticoagulants. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-03-27T00:00:00", "date_created": "2023-03-27T08:56:51", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 334, "nb_individuals": 2, "nb_properties": 10, "max_depth": 5, "max_children": 59, "avg_children": 23, "classifiable": true, "nb_inconsistent": 36, "indexed": true, "md5sum": null } }, { "acronym": "SPTO", "name": "Solanaceae Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 259, "download_url": "media/ontologies/SPTO/5/spto.obo", "submission_id": 5, "domain": null, "description": "Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance.", "documentation": "http://solgenomics.net/search/phenotypes/traits", "publication": "http://www.ncbi.nlm.nih.gov/pubmed/18539779", "publications": null, "products": null, "taxon": null, "date_released": "2017-10-17T01:14:30", "date_created": "2017-10-17T01:14:30", "home_page": "solgenomics.net", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 442, "nb_individuals": 0, "nb_properties": 3, "max_depth": 5, "max_children": 75, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SSBD", "name": "SSBD Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7502, "download_url": "media/ontologies/SSBD/4/ssbd.owl", "submission_id": 4, "domain": null, "description": "SSBD Ontology is a two-tier model for FAIR metadata of bioimaging.\r\nThe repository layer captures the minimum information required for rapid, DOI-based release of image datasets, while the added-value layer enriches the same instances with detailed biological context (organism, strain, cell/cell-line, anatomy, GO terms) and imaging provenance (imaging method, instrument, OME-Zarr links).\r\nSSBD Ontology re-uses and aligns with OBO Foundry ontologies— ChEBI, CL, CLO, UBERON, GO, FBbi, OBI, IAO—so that multi scale data information can be integrated uniformly.\r\nThe ontology is distributed under CC-BY 4.0., The SSBD Ontology is an ontology of SSBD (https://ssbd.riken.jp).\r\nSSBD is a platform for sharing and reusing bioimaging data. SSBD:database is an added-value database for bioimages and biological dynamics data. It provides a rich set of open resources for analyzing microscopy images and qunatitative data of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Microscopy images and quantitative biological data are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-07-23T00:00:00", "date_created": "2025-07-23T00:00:00", "home_page": "https://github.com/openssbd/ssbd-ontology", "version": "2025-05-12", "has_ontology_language": "OWL", "nb_classes": 1478, "nb_individuals": 522, "nb_properties": 116, "max_depth": 16, "max_children": 131, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "Pheno-e", "name": "Pheno-e Ontology", "status": "Classified", "topics": [ "An integrated phenotype ontology", "combining phenotypes from human", "mouse", "fish", "yeast and Fly" ], "species": [ "human", "mouse", "fish", "yeast and Fly" ], "submission": { "id": 4257, "download_url": "media/ontologies/Pheno-e/7/pheno-e.owl", "submission_id": 7, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-02-11T12:11:04.223485", "date_created": "2021-02-11T12:11:04.223460", "home_page": null, "version": "0.0.6", "has_ontology_language": "OWL", "nb_classes": 336704, "nb_individuals": 0, "nb_properties": 240, "max_depth": 23, "max_children": 29317, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PLIO", "name": "Protein-ligand interaction ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 437, "download_url": "media/ontologies/PLIO/1/plio.owl", "submission_id": 1, "domain": null, "description": "The protein--ligand interaction ontology (PLIO) was developed around three main concepts, namely target, ligand and interaction, and was enriched by adding synonyms, useful annotations and references.", "documentation": null, "publication": "http://www.ncbi.nlm.nih.gov/pubmed/21546398", "publications": null, "products": null, "taxon": null, "date_released": "2011-06-15T00:00:00", "date_created": "2014-11-03T11:22:29", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 376, "nb_individuals": 0, "nb_properties": 11, "max_depth": 14, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PLOSTHES", "name": "PLOS Thesaurus", "status": "Classified", "topics": null, "species": null, "submission": { "id": 625, "download_url": "media/ontologies/PLOSTHES/10/plosthes.skos", "submission_id": 10, "domain": null, "description": "The PLOS Thesaurus includes over 10,000 Subject Area terms covering the wide range of research topics included the PLOS journals. It was initially built for PLOS in 2012 by Access Innovations (http://www.accessinn.com/). The entire corpus of PLOS articles was analysed to ensure that the thesaurus covers relevant research domains comprehensively. Updates are released several times a year.", "documentation": "http://journals.plos.org/plosone/s/help-using-this-site#loc-subject-areas", "publication": "http://www.plos.org/", "publications": null, "products": null, "taxon": null, "date_released": "2017-09-14T00:00:00", "date_created": "2017-09-21T15:53:00", "home_page": "https://github.com/PLOS/plos-thesaurus", "version": "plosthes.2017-1", "has_ontology_language": "SKOS", "nb_classes": 4, "nb_individuals": 10712, "nb_properties": 8, "max_depth": 0, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SNOMED-Ethnic-Group", "name": "SNOMED Ethnic Group", "status": "Classified", "topics": null, "species": null, "submission": { "id": 65, "download_url": "media/ontologies/SNOMED-Ethnic-Group/2/snomed-ethnic-group.owl", "submission_id": 2, "domain": null, "description": "Ethnic Group From SNOMED CT", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-09-21T07:00:00", "date_created": "2010-09-27T04:39:14", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 261, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 58, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SOCMEDIA", "name": "Sercan Kiyak", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7318, "download_url": "media/ontologies/SOCMEDIA/3/socmedia.owl", "submission_id": 3, "domain": null, "description": "This is an ontology for FAIR storage of Twitter/X data", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-04-22T00:00:00", "date_created": "2025-04-23T07:53:45", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SOS", "name": "emergência", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4594, "download_url": "media/ontologies/SOS/1/sos.owl", "submission_id": 1, "domain": null, "description": "Um teste", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-20T00:00:00", "date_created": "2021-09-20T17:41:36", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 64, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 6, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SOY", "name": "Soy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 402, "download_url": "media/ontologies/SOY/2/soy.obo", "submission_id": 2, "domain": null, "description": "Growth, trait and development ontology for soybean", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-04-30T07:00:00", "date_created": "2013-05-01T01:23:44", "home_page": "soybase.org", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 1835, "nb_individuals": 0, "nb_properties": 0, "max_depth": 8, "max_children": 64, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SP", "name": "SMART Protocols", "status": "Classified", "topics": null, "species": null, "submission": { "id": 680, "download_url": "media/ontologies/SP/6/sp.owl", "submission_id": 6, "domain": null, "description": "The SeMAntic RepresenTation for Protocols, SMART Protocols, provides a structured OWL vocabulary of experimental protocols. SMART Protocols ontology includes two modules, SP-document and SP-workflow. SP-document, aims to provide a structured vocabulary of concepts to represent information necessary and sufficient for reporting an experimental protocol. SP-Workflow represents: i) the executable elements of a protocol, protocol instructions; ii) the experimental actions and material entities that participates in instructions (sample/specimen, organisms, reagents, instruments); and iii) the order of execution of the instructions.", "documentation": "http://vocab.linkeddata.es/SMARTProtocols/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-07-01T00:00:00", "date_created": "2017-04-18T14:16:40", "home_page": "https://smartprotocols.github.io/", "version": "4.0", "has_ontology_language": "OWL", "nb_classes": 0, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SPD", "name": "Spider Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6062, "download_url": "media/ontologies/SPD/26/spd.owl", "submission_id": 26, "domain": "anatomy and development", "description": "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.3390/d11100202", "title": "The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data" } ], "products": [ { "id": "spd.owl", "ontology_purl": "http://purl.obolibrary.org/obo/spd.owl" } ], "taxon": { "id": "NCBITaxon:6893", "label": "spiders" }, "date_released": "2023-09-18T14:17:36.530301", "date_created": "2023-09-18T14:17:36.530312", "home_page": "http://research.amnh.org/atol/files/", "version": null, "has_ontology_language": "OWL", "nb_classes": 832, "nb_individuals": 0, "nb_properties": 2, "max_depth": 10, "max_children": 275, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c87d0cfeaf9cd2cd10dd05ea0f289d04" } }, { "acronym": "SPINALH", "name": "NeuroMorpho.Org spinal cord regions ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 542, "download_url": "media/ontologies/SPINALH/3/spinalh.owl", "submission_id": 3, "domain": null, "description": "A hierarchy of Spinal Cord regions in Bilateral species.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-03-31T01:10:37", "date_created": "2017-03-31T01:10:37", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 11, "nb_individuals": 11, "nb_properties": 0, "max_depth": 3, "max_children": 5, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "Spitali", "name": "Dallendyshe", "status": "Classified", "topics": [ "Spitali" ], "species": [ "Spitali" ], "submission": { "id": 2288, "download_url": "media/ontologies/Spitali/1/spitali.owl", "submission_id": 1, "domain": null, "description": "se di", "documentation": "se di", "publication": "se di", "publications": null, "products": null, "taxon": null, "date_released": "2019-02-21T22:25:23.044763", "date_created": "2019-02-21T22:25:23.044744", "home_page": "Desktop", "version": "se di", "has_ontology_language": "OWL", "nb_classes": 21, "nb_individuals": 92, "nb_properties": 27, "max_depth": 3, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "STATO", "name": "The Statistical Methods Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7201, "download_url": "media/ontologies/STATO/16/stato.owl", "submission_id": 16, "domain": "information technology", "description": "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/31831744", "title": "Experiment design driven FAIRification of omics data matrices, an exemplar" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/32109232", "title": "Semantic concept schema of the linear mixed model of experimental observations" } ], "products": [ { "id": "stato.owl", "ontology_purl": "http://purl.obolibrary.org/obo/stato.owl" } ], "taxon": null, "date_released": "2025-02-24T14:31:43.478757", "date_created": "2025-02-24T14:31:43.478772", "home_page": "http://stato-ontology.org/", "version": null, "has_ontology_language": "OWL", "nb_classes": 1004, "nb_individuals": 9, "nb_properties": 64, "max_depth": 15, "max_children": 41, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "e6472443f6bb4f95477253d4f97d93ad" } }, { "acronym": "TCDO", "name": "Traditional Chinese Drug Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 4667, "download_url": "media/ontologies/TCDO/3/tcdo.owl", "submission_id": 3, "domain": null, "description": "More than 400 popular TCD decoction pieces (TCD-DP) were selected from authoritative textbooks, standards and terminologies, as well as their crudes, Chinese medicinal material (CMM). The TCD-DP entities are categorized in 23 upper level terms by their clinical effects. Their properties like nature, flavor, toxicity and meridian entries are also defined formally by logical relations. CMM’s species is mapped to the NCBITaxon taxonomy ontology, which establishes a link between traditional medicine and modern biomedical science. TCDO contains over 1,500 terms, including terms drawn from existing ontologies and more than 1,000 TCD-specific terms, labeled in both Chinese and English.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-05-30T00:00:00", "date_created": "2021-06-16T08:23:46", "home_page": "https://github.com/TCMOntology/TCDO", "version": "0.05", "has_ontology_language": "OWL", "nb_classes": 1988, "nb_individuals": 4, "nb_properties": 42, "max_depth": 22, "max_children": 435, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "T4FS", "name": "terms4FAIRskills", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7185, "download_url": "media/ontologies/T4FS/4/t4fs.owl", "submission_id": 4, "domain": "information", "description": "A terminology for the skills necessary to make data FAIR and to keep it FAIR.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.5281/zenodo.4705219", "title": "EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report" } ], "products": [ { "id": "t4fs.owl", "ontology_purl": "http://purl.obolibrary.org/obo/t4fs.owl" }, { "id": "t4fs.obo", "ontology_purl": "http://purl.obolibrary.org/obo/t4fs.obo" }, { "id": "t4fs.json", "ontology_purl": "http://purl.obolibrary.org/obo/t4fs.json" }, { "id": "t4fs-community.owl", "title": "This community view of T4FS makes the ontology available in OWL without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy.", "ontology_purl": "http://purl.obolibrary.org/obo/t4fs-community.owl" }, { "id": "t4fs-community.obo", "title": "This community view of T4FS makes the ontology available in OBO format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy.", "ontology_purl": "http://purl.obolibrary.org/obo/t4fs-community.obo" }, { "id": "t4fs-community.json", "title": "This community view of T4FS makes the ontology available in JSON format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy.", "ontology_purl": "http://purl.obolibrary.org/obo/t4fs-community.json" } ], "taxon": null, "date_released": "2025-02-17T13:30:11.734218", "date_created": "2025-02-17T13:30:11.734221", "home_page": "https://github.com/terms4fairskills/FAIRterminology", "version": null, "has_ontology_language": "OWL", "nb_classes": 564, "nb_individuals": 18, "nb_properties": 27, "max_depth": 9, "max_children": 108, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "96cee4b92541f48e86e89486fd080525" } }, { "acronym": "SSE", "name": "Surgical Secondary Events", "status": "Classified", "topics": null, "species": null, "submission": { "id": 194, "download_url": "media/ontologies/SSE/2/sse.owl", "submission_id": 2, "domain": null, "description": "Memorial Sloan-Kettering Cancer Center Surgical Secondary Events Ontology (Adverse Events)", "documentation": null, "publication": "http://www.mskcc.org/cancer-care/healthcare-professionals/surgical-secondary-events-system/references", "publications": null, "products": null, "taxon": null, "date_released": "2013-07-11T07:00:00", "date_created": "2013-07-17T15:40:19", "home_page": "http://www.mskcc.org/sse", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 244, "nb_individuals": 1323, "nb_properties": 19, "max_depth": 2, "max_children": 48, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SSN", "name": "Semantic Sensor Network Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 103, "download_url": "media/ontologies/SSN/2/ssn.owl", "submission_id": 2, "domain": null, "description": "This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports.", "documentation": "https://w3c.github.io/sdw/ssn-usage/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-04-17T00:00:00", "date_created": "2017-07-11T20:04:08", "home_page": "https://www.w3.org/TR/vocab-ssn/", "version": "New modular version of the SSN ontology. \n\nThis ontology was originally developed in 2009-2011 by the W3C Semantic Sensor Networks Incubator Group (SSN-XG). For more information on the group's activities see: http://www.w3.org/2005/Incubator/ssn/. The ontology was revised and modularized in 2015-2017 by the W3C/OGC Spatial Data on the Web Working Group, see: https://www.w3.org/2015/spatial/wiki/Semantic_Sensor_Network_Ontology. \n\nIn particular, (a) the scope is extended to include actuation and sampling; (b) the core concepts and properties are factored out into the SOSA ontology. The SSN ontology imports SOSA and adds formal axiomatization consistent with the text definitions in SOSA, and adds classes and properties to accommodate the scope of the original SSN ontology. ", "has_ontology_language": "OWL", "nb_classes": 23, "nb_individuals": 2, "nb_properties": 38, "max_depth": 1, "max_children": 16, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TWCP", "name": "Top Women Chess Players", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4786, "download_url": "media/ontologies/TWCP/1/twcp.owl", "submission_id": 1, "domain": null, "description": "..", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-12-20T00:00:00", "date_created": "2021-12-20T19:15:30", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 49, "nb_individuals": 3280, "nb_properties": 18, "max_depth": 3, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TXPO", "name": "Toxic Process Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5538, "download_url": "media/ontologies/TXPO/28/txpo.owl", "submission_id": 28, "domain": "chemistry and biochemistry", "description": "TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/32883995", "title": "Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management" } ], "products": [ { "id": "txpo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/txpo.owl" } ], "taxon": null, "date_released": "2022-12-12T13:55:32.258303", "date_created": "2022-12-12T13:55:32.258325", "home_page": "https://toxpilot.nibiohn.go.jp/", "version": null, "has_ontology_language": "OWL", "nb_classes": 9407, "nb_individuals": 0, "nb_properties": 82, "max_depth": 17, "max_children": 723, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "fa876b76cc85363e179460a91cf6992a" } }, { "acronym": "HIVHPVSCHISTOSOM", "name": "HIVHPVSchistosomiasis", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6109, "download_url": "media/ontologies/HIVHPVSCHISTOSOM/2/hivhpvschistosom.skos", "submission_id": 2, "domain": null, "description": "This is the ontology containing the controlled terms and semantic properties used in the HIV, HPV and Schistosomiasis dataset obtained from the MOH Uganda", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-03T00:00:00", "date_created": "2023-10-03T23:17:24", "home_page": null, "version": "1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 10, "nb_properties": 10, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HL7", "name": "Health Level Seven Reference Implementation Model, Version 3", "status": "Classified", "topics": null, "species": null, "submission": { "id": 80, "download_url": "media/ontologies/HL7/9/hl7.umls", "submission_id": 9, "domain": null, "description": "This version is the first update to Normative RIM, Release 3. It is based on changes approved in Harmonization in November 2010. This release of the RIM is bound to HL7 Abstract Data Types Release 2.", "documentation": "http://www.hl7.org", "publication": "http://www.hl7.org", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:43", "date_created": "2017-02-06T21:26:43", "home_page": "http://www.hl7.org", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 10235, "nb_individuals": 0, "nb_properties": 63, "max_depth": 10, "max_children": 337, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HMISLAB0115", "name": "HMIS LAB 011 5", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4693, "download_url": "media/ontologies/HMISLAB0115/1/hmislab0115.skos", "submission_id": 1, "domain": null, "description": "Assignment for group 5 of DSIP", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-11-12T00:00:00", "date_created": "2021-11-12T15:01:37", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 18, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD-O-3", "name": "International Classification of Diseases for Oncology, 3rd edition", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6487, "download_url": "media/ontologies/ICD-O-3/5/icd-o-3.owl", "submission_id": 5, "domain": null, "description": "Ontology used for oncology research derived from the European Cancer Information System (ECIS)", "documentation": "https://www.who.int/standards/classifications/other-classifications/international-classification-of-diseases-for-oncology", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-03-19T00:00:00", "date_created": "2024-03-22T13:17:49", "home_page": "https://data.jrc.ec.europa.eu/dataset/88ff4ec5-1832-403e-abe1-64928592568f", "version": "OCD-O Revision 3.2 (complete)", "has_ontology_language": "OWL", "nb_classes": 2753, "nb_individuals": 0, "nb_properties": 9, "max_depth": 9, "max_children": 40, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICD-O-3_MORPH", "name": "ICD-O-3 Morphology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6491, "download_url": "media/ontologies/ICD-O-3_MORPH/1/icd-o-3_morph.owl", "submission_id": 1, "domain": null, "description": "International Classification of Diseases for Oncology, 3rd revision, morphology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-03-21T00:00:00", "date_created": "2024-03-21T19:47:57", "home_page": null, "version": "3.1", "has_ontology_language": "OWL", "nb_classes": 2317, "nb_individuals": 0, "nb_properties": 3, "max_depth": 9, "max_children": 40, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICEO", "name": "Integrative and Conjugative Element Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4533, "download_url": "media/ontologies/ICEO/22/iceo.owl", "submission_id": 22, "domain": null, "description": "ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "iceo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/iceo.owl" } ], "taxon": null, "date_released": "2021-10-25T14:59:40.929803", "date_created": "2021-10-25T14:59:40.929820", "home_page": "https://github.com/ontoice/ICEO", "version": null, "has_ontology_language": "OWL", "nb_classes": 30914, "nb_individuals": 6, "nb_properties": 53, "max_depth": 16, "max_children": 3467, "avg_children": 23, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "6a3d51e0607a09f0dc7077bd2fb33ba8" } }, { "acronym": "PhenomeNET", "name": "PhenomeNET Ontology", "status": "Unloadable", "topics": [ "phenotype" ], "species": [ "Human" ], "submission": { "id": 817, "download_url": "media/ontologies/PhenomeNET/1/phenomenet.owl", "submission_id": 1, "domain": null, "description": "An integrated phenotype ontology, combining phenotypes from human, mouse, fish.", "documentation": null, "publication": "http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005500", "publications": null, "products": null, "taxon": null, "date_released": "2017-11-12T09:59:39.243151", "date_created": "2017-11-12T09:59:39.243131", "home_page": null, "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 244208, "nb_individuals": 0, "nb_properties": 177, "max_depth": 18, "max_children": 24788, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF", "name": "International Classification of Functioning, Disability and Health", "status": "Classified", "topics": null, "species": null, "submission": { "id": 96, "download_url": "media/ontologies/ICF/3/icf.owl", "submission_id": 3, "domain": null, "description": "The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. These domains are classified from body, individual and societal perspectives by means of two lists: a list of body functions and structure, and a list of domains of activity and participation. Since an individual's functioning and disability occurs in a context, the ICF also includes a list of environmental factors.\r\n<br><br>\r\nSource: <a href=\"http://www.who.int/classifications/icf/en/\">http://www.who.int/classifications/icf/en/</a>", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-05-08T07:00:00", "date_created": "2012-05-08T23:07:03", "home_page": "http://www.who.int/classifications/icf/en/", "version": "1.0.2", "has_ontology_language": "OWL", "nb_classes": 1596, "nb_individuals": 4807, "nb_properties": 67, "max_depth": 8, "max_children": 20, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d1", "name": "ICF-d1. LEARNING AND APPLYING KNOWLEDGE", "status": "Classified", "topics": null, "species": null, "submission": { "id": 640, "download_url": "media/ontologies/ICF-d1/1/icf-d1.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 1: LEARNING AND APPLYING KNOWLEDGE\" (d1) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T21:53:23", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 60, "nb_individuals": 2445, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TCO", "name": "Thyroid Cancer Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3743, "download_url": "media/ontologies/TCO/2/tco.owl", "submission_id": 2, "domain": null, "description": "Thyroid cancer ontology (TCO) contains 578 concepts organized under 6 biological viewpoints, i.e., Anatomy and Histoembryology, Basic Information of Patient, Cellular or Molecular Interactions, Clinical Aspects, Etiology, Pathology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-07-02T00:00:00", "date_created": "2020-07-03T01:27:51", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 578, "nb_individuals": 0, "nb_properties": 3, "max_depth": 7, "max_children": 510, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SYRIAN-CINEMA", "name": "Syrian Cinema", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5775, "download_url": "media/ontologies/SYRIAN-CINEMA/3/syrian-cinema.owl", "submission_id": 3, "domain": null, "description": "Syrian Cenima antology by Mouaz Al-Shahmeh - 216212", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-04-12T00:00:00", "date_created": "2023-04-13T03:28:03", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 6, "nb_individuals": 65, "nb_properties": 10, "max_depth": 2, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TDWGSPEC", "name": "TDWG Specimen LSID Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 562, "download_url": "media/ontologies/TDWGSPEC/1/tdwgspec.owl", "submission_id": 1, "domain": null, "description": "Biodiversity Information Standards (TDWG) is an international not-for-profit group that develops standards and protocols for sharing biodiversity data. They have a detailed collection of vocabularies and ontologies for studies of biological organisms.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-07-01T00:00:00", "date_created": "2017-02-16T23:29:08", "home_page": null, "version": "0.3", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 7, "nb_properties": 31, "max_depth": 1, "max_children": 7, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TARA", "name": "TARA Acupoints Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7454, "download_url": "media/ontologies/TARA/2/tara.owl", "submission_id": 2, "domain": null, "description": "The TARA Acupoints Ontology is an ontology being developed as part of the Topological Atlas and Repository for Acupoint Research (TARA) project funded by the National Institute of Health (NIH). The goal of the project is to establish a new comprehensive resource for the acupuncture research and clinician community. The ontology will be used to support semantic search and annotations for anatomical maps, atlases, and data sets relevant to the TARA project. Project link: https://www.acupunctureresearch.org/tara", "documentation": "https://obofoundry.org/ontology/uberon.html", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-06-30T00:00:00", "date_created": "2025-06-30T00:00:00", "home_page": "https://github.com/smtifahim/TARA-Ontology-Repository/tree/master/ontology-files/generated", "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 1813, "nb_individuals": 16, "nb_properties": 58, "max_depth": 13, "max_children": 480, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TAXRANK", "name": "Taxonomic rank vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7617, "download_url": "media/ontologies/TAXRANK/13/taxrank.owl", "submission_id": 13, "domain": "organisms", "description": "A vocabulary of taxonomic ranks (species, family, phylum, etc)", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1186/2041-1480-4-34", "title": "The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes" } ], "products": [ { "id": "taxrank.owl", "ontology_purl": "http://purl.obolibrary.org/obo/taxrank.owl" }, { "id": "taxrank.obo", "ontology_purl": "http://purl.obolibrary.org/obo/taxrank.obo" } ], "taxon": null, "date_released": "2025-09-29T12:38:11.116787", "date_created": "2025-09-29T12:38:11.116790", "home_page": "https://github.com/phenoscape/taxrank", "version": null, "has_ontology_language": "OWL", "nb_classes": 77, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 73, "avg_children": 25, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "9d64c7f5a8dea64945a61b5288bbf67d" } }, { "acronym": "SYRIANDRUGS", "name": "Syrian Drugs and medicines", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7189, "download_url": "media/ontologies/SYRIANDRUGS/1/syriandrugs.owl", "submission_id": 1, "domain": null, "description": "This ontology is to represent Syrian drugs ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-01-01T00:00:00", "date_created": "2025-02-15T15:01:25", "home_page": null, "version": "0.01", "has_ontology_language": "OWL", "nb_classes": 3, "nb_individuals": 14523, "nb_properties": 2, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d2", "name": "ICF-d2. GENERAL TASKS AND DEMANDS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 29, "download_url": "media/ontologies/ICF-d2/1/icf-d2.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 2: GENERAL TASKS AND DEMANDS\" (d2) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:33:21", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 56, "nb_individuals": 2441, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d8", "name": "ICF-d8. MAJOR LIFE AREAS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 300, "download_url": "media/ontologies/ICF-d8/1/icf-d8.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 8: MAJOR LIFE AREAS\" (d8) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:43:58", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 62, "nb_individuals": 2447, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-d810-d839", "name": "ICF-d810-d839. Education", "status": "Classified", "topics": null, "species": null, "submission": { "id": 568, "download_url": "media/ontologies/ICF-d810-d839/1/icf-d810-d839.owl", "submission_id": 1, "domain": null, "description": "The \"ACTIVITIES AND PARTICIPATION CHAPTER 8: MAJOR LIFE AREAS -> Education\" (d810-d839) sub-tree of the \"International Classification of Functioning, Disability and Health (ICF)\" ontology.", "documentation": "http://www.who.int/classifications/icf/en/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-05-04T07:00:00", "date_created": "2010-05-04T22:50:18", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 35, "nb_individuals": 2420, "nb_properties": 65, "max_depth": 5, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICF-NoCodeLabel", "name": "ICF with label-without-code", "status": "Classified", "topics": null, "species": null, "submission": { "id": 500, "download_url": "media/ontologies/ICF-NoCodeLabel/1/icf-nocodelabel.owl", "submission_id": 1, "domain": null, "description": "This view contains ICF 1.01 ontology with rdfs:label values that do not contain the codes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-04-23T07:00:00", "date_created": "2012-04-24T02:41:18", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 1596, "nb_individuals": 4807, "nb_properties": 66, "max_depth": 8, "max_children": 20, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "IDOBRU", "name": "Brucellosis Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 456, "download_url": "media/ontologies/IDOBRU/61/idobru.owl", "submission_id": 61, "domain": null, "description": "Brucellosis Ontology is a biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-03-29T01:04:35", "date_created": "2015-03-29T01:04:36", "home_page": "http://www.phidias.us/bbp/idobru/index.php", "version": "Arbor version; 1.2.92", "has_ontology_language": "OWL", "nb_classes": 3214, "nb_individuals": 25, "nb_properties": 158, "max_depth": 34, "max_children": 441, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LHO", "name": "LivestockHealthOntology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7845, "download_url": "media/ontologies/LHO/9/lho.owl", "submission_id": 9, "domain": null, "description": "The Livestock Health Ontology (LHO) extends the DECIDE ontology specifically designed for salmon usecase. LHO contains information on the health and well-being of livestock animal species such as cattle, pigs, and poultry. Furthermore, it represents the explicit structured and standardized framework for specific domain knowledge and data integration of livestock species. During the development process, knowledge can be retrieved from domain experts, and after the retrieving process, the prototype is designed for reasoning and planning of data related to cattle, pigs, and poultry. Moreover, LHO contains information regarding farms Identifications, their samples, geolocation, breed, diagnostic tests, Pathogen identifications, and Pathogen results for specific bacteria such as Histophilus Somni (HS), Mannheimia Haemolytica (MH), Pasteurella Multocida (PM), Bovine Coronavirus (BCV) bacterial mycoplasma and aerobic culture results for the respiratory diseases in cattle. This information is represented as concepts of classes, subclasses, and their relationship in the form of object and data properties.\r\nFor pigs, it includes FarmType, age, weight, and pathogens like PRRS, SwineInfluenza, and M_Hyponemoniea. In poultry, LHO incorporates FarmType, with specific pathogen names such as Infectious Bronchitis (IB), providing a concise overview of health aspects across livestock species.\r\n), Salmon case study demonstrates the semantic modeling and integration of aquaculture-specific attributes such as hasMortality, hasActualBiomass, hasWaterType, and hasLocalAuthority. The data supports epidemiological analysis of fish health by mapping samples and measurements to environmental and production factors.", "documentation": "https://github.com/decide-project-eu/LivestockHealthOntology/tree/main", "publication": "['https://zenodo.org/records/14049611']", "publications": null, "products": null, "taxon": null, "date_released": "2025-12-19T00:00:00", "date_created": "2025-12-19T00:00:00", "home_page": "https://bioportal.bioontology.org/ontologies/LHO", "version": "V1.4", "has_ontology_language": "OWL", "nb_classes": 105, "nb_individuals": 139, "nb_properties": 34, "max_depth": 4, "max_children": 32, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ROLEO", "name": "Role Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 460, "download_url": "media/ontologies/ROLEO/1/roleo.owl", "submission_id": 1, "domain": null, "description": "The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-10-23T07:00:00", "date_created": "2010-10-23T11:13:05", "home_page": "http://sourceforge.net/projects/roleo", "version": "Vision Release; 1.0.11", "has_ontology_language": "OWL", "nb_classes": 673, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 563, "avg_children": 39, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LSFO", "name": "Lifestyle Factor Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6866, "download_url": "media/ontologies/LSFO/1/lsfo.obo", "submission_id": 1, "domain": null, "description": "In this ontology, we defined nine distinct categories that encompass various aspects of lifestyle factors (LSFs), creating a unified Lifestyle Factors Ontology (LSFO) across these categories.\r\n\r\nWithin the context of lifestyle, we have identified nine categories that can collectively describe all LSFs, namely:\r\n\t1-Nutrition, a category that covers different branches such as dietary habits, food groups, food processing and preparation, macronutrients, and micronutrients, among others.\r\n\t2-Socioeconomic factors, which includes social and economic conditions such as income, wealth, education and socioeconomic status.\r\n\t3-Environmental exposures, includes exposure to various environmental factors, such as air pollution, water quality, and workplace hazards, that can impact an individual’s health.\r\n\t4-Substance use, covers concepts such as smoking, as well as illicit drug use.\r\n\t5-Physical activities, includes regular exercise and physically demanding activities like leisure time, occupational, and household physical activities.\r\n\t6-Non-physical leisure time activities, describes any activity an individual might engage in during their free time that is not a physical activity.\r\n\t7-Personal care products and cosmetic procedures, covers activities related to hygiene, use of cosmetic and cleaning products as well as invasive procedures that people undergo to improve their appearance, such as cosmetic surgery.\r\n\t8-Sleep, covers sleep quality, stages, and habits.\r\n\t9-Mental health practices, includes the behaviors and habits related to maintaining good mental health and emotional well-being such as meditation, and psychotherapy.\r\n", "documentation": null, "publication": "https://www.biorxiv.org/content/10.1101/2024.06.13.598816v2", "publications": null, "products": null, "taxon": null, "date_released": "2024-09-08T00:00:00", "date_created": "2024-09-08T07:25:35", "home_page": null, "version": "1.01", "has_ontology_language": "OBO", "nb_classes": 5598, "nb_individuals": 0, "nb_properties": 8, "max_depth": 11, "max_children": 232, "avg_children": 17, "classifiable": true, "nb_inconsistent": 21, "indexed": true, "md5sum": null } }, { "acronym": "TERRADCAT_AP", "name": "Terra DCAT Application Profile", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 4584, "download_url": "media/ontologies/TERRADCAT_AP/2/terradcat_ap.owl", "submission_id": 2, "domain": null, "description": "Terra DCAT AP is the Broad Data Sciences Platform's application profile. It is an RDF vocabulary which extends the W3C's Data Catalog Vocabulary (https://www.w3.org/TR/vocab-dcat/)", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-17T00:00:00", "date_created": "2021-09-17T21:32:53", "home_page": "https://github.com/DataBiosphere/terra-interoperability-model", "version": "alpha", "has_ontology_language": "OWL", "nb_classes": 110, "nb_individuals": 21, "nb_properties": 101, "max_depth": 4, "max_children": 36, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MARC-RELATORS", "name": "MARC Code List for Relators", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5821, "download_url": "media/ontologies/MARC-RELATORS/3/marc-relators.skos", "submission_id": 3, "domain": null, "description": "Relator terms and their associated codes designate the relationship between a name and a bibliographic resource. The relator codes are three-character lowercase alphabetic strings that serve as identifiers. Either the term or the code may be used as controlled values.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-05-19T01:12:42", "date_created": "2023-05-19T01:12:43", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 5, "nb_individuals": 271, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MAT", "name": "Minimal Anatomical Terminology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 189, "download_url": "media/ontologies/MAT/3/mat.obo", "submission_id": 3, "domain": null, "description": "Minimal set of terms for anatomy", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-21T01:06:11", "date_created": "2015-08-21T01:06:11", "home_page": null, "version": "1.1", "has_ontology_language": "OBO", "nb_classes": 2166, "nb_individuals": 0, "nb_properties": 19, "max_depth": 1, "max_children": 457, "avg_children": 153, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MAT_TEST_CASE2", "name": "Maternity_Test_Case2", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4296, "download_url": "media/ontologies/MAT_TEST_CASE2/1/mat_test_case2.owl", "submission_id": 1, "domain": null, "description": "Testing", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-02-20T00:00:00", "date_created": "2021-02-20T16:21:55", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 56, "nb_individuals": 0, "nb_properties": 8, "max_depth": 3, "max_children": 22, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "STMSO", "name": "symptomatic treatment of multiple sclerosis ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5166, "download_url": "media/ontologies/STMSO/1/stmso.owl", "submission_id": 1, "domain": null, "description": "STMSO is the first comprehensive semantic representation of symptomatic treatment of MS and provides a major step toward the development of intelligent Clinical Decision Support System (CDSS) for MS symptomatic treatment. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-06-20T00:00:00", "date_created": "2022-06-20T22:59:16", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 628, "nb_individuals": 153, "nb_properties": 47, "max_depth": 8, "max_children": 126, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "STO", "name": "Stroke Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1581, "download_url": "media/ontologies/STO/3/sto.owl", "submission_id": 3, "domain": null, "description": "Stroke ontology covers the knowledge domain of stroke based on expert views and translational continuum of stroke research. The Stroke Ontology (STO) presented here, is the first draft and we hope that the scientific community can contribute to the enrichment of this draft. The ontology can be used a reference for a variety of bioinformatics applications such as annotation of terms, harmonization of experimental data, text-mining, and modeling disease mechanism. \r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-06-17T00:00:00", "date_created": "2018-06-17T13:55:16", "home_page": null, "version": "2017-11-01", "has_ontology_language": "OWL", "nb_classes": 1712, "nb_individuals": 69, "nb_properties": 29, "max_depth": 5, "max_children": 1676, "avg_children": 18, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "STO-DRAFT", "name": "The Stroke Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1739, "download_url": "media/ontologies/STO-DRAFT/1/sto-draft.owl", "submission_id": 1, "domain": null, "description": "The Stroke Ontology (STO) covers the knowledge domain of stroke based on expert views and translational continuum of stroke research. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-08-07T00:00:00", "date_created": "2018-08-07T13:36:29", "home_page": null, "version": "2017-11-01", "has_ontology_language": "OWL", "nb_classes": 1712, "nb_individuals": 69, "nb_properties": 29, "max_depth": 5, "max_children": 1676, "avg_children": 18, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "STY", "name": "Semantic Types Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 467, "download_url": "media/ontologies/STY/8/sty.umls", "submission_id": 8, "domain": null, "description": "UMLS Semantic Network\r\nThe Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types. This section of the documentation provides an overview of the Semantic Network, and describes the files of the Semantic Network. Sample records illustrate structure and content of these files.\r\n\r\nThe Semantic Network is distributed as one of the UMLS Knowledge Sources and as an open source resource available on the Semantic Network Web site, subject to these terms and conditions.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:25:35", "date_created": "2017-02-06T21:25:36", "home_page": "https://semanticnetwork.nlm.nih.gov/", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 127, "nb_individuals": 0, "nb_properties": 0, "max_depth": 7, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SUGARBIND", "name": "SugarBind", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5899, "download_url": "media/ontologies/SUGARBIND/1/sugarbind.owl", "submission_id": 1, "domain": null, "description": "Ontology for representing glycan and pathogen binding interaction data in RDF. Many of the terms are based on the data originally contained in the SugarBind database.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-06-22T00:00:00", "date_created": "2023-06-22T08:35:50", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 13, "nb_individuals": 0, "nb_properties": 11, "max_depth": 2, "max_children": 8, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "suicideo", "name": "suicideonto", "status": "Classified", "topics": null, "species": null, "submission": { "id": 665, "download_url": "media/ontologies/suicideo/1/suicideo.owl", "submission_id": 1, "domain": null, "description": "ontology for suicidology ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-08-26T07:00:00", "date_created": "2013-08-26T06:09:58", "home_page": null, "version": "2", "has_ontology_language": "OWL", "nb_classes": 290, "nb_individuals": 50, "nb_properties": 14, "max_depth": 6, "max_children": 22, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SURGICAL", "name": "Nurse Surgical", "status": "Classified", "topics": null, "species": null, "submission": { "id": 281, "download_url": "media/ontologies/SURGICAL/1/surgical.owl", "submission_id": 1, "domain": null, "description": "This is an ontology of a surgical nurse's process domain", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-09-24T00:00:00", "date_created": "2015-09-24T02:15:57", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 51, "nb_individuals": 63, "nb_properties": 13, "max_depth": 3, "max_children": 10, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SVU_MWS_WSM", "name": "Syrian Cinema Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6576, "download_url": "media/ontologies/SVU_MWS_WSM/1/svu_mws_wsm.owl", "submission_id": 1, "domain": null, "description": "Syrian Cinema Othology\r\nthis othology releted to Protege project which is a practical assignment in the Semantic Web course for a graduate student in the Master of Web Science program with Dr.Bassel Al Khatib \r\n\r\nThis ontology conten seven class \r\nEach class has the necessary data properties and several object properties which represent relationship between classes", "documentation": "rahaf_246783@svuonline.org", "publication": "rahaf_246783@svuonline.org", "publications": null, "products": null, "taxon": null, "date_released": "2024-04-27T00:00:00", "date_created": "2024-04-27T22:10:05", "home_page": "rahaf_246783@svuonline.org", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 7, "nb_individuals": 110, "nb_properties": 7, "max_depth": 3, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SVU_MWS_WSM_F23", "name": "MWS-WSM-F23 Syrian Cinema Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6582, "download_url": "media/ontologies/SVU_MWS_WSM_F23/1/svu_mws_wsm_f23.owl", "submission_id": 1, "domain": null, "description": "This ontology releted to Protege project which is a practical assignment in the Semantic Web course for a graduate student in the Master of Web Science program with Dr.Bassel Al Khatib \r\nThis ontology contens seven class Each class has the necessary data properties and several object properties which represent relationship between classes", "documentation": "rahaf_246783@svuonline.org", "publication": "rahaf_246783@svuonline.org", "publications": null, "products": null, "taxon": null, "date_released": "2024-04-30T00:00:00", "date_created": "2024-04-30T21:11:46", "home_page": "rahaf_246783@svuonline.org", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 7, "nb_individuals": 110, "nb_properties": 7, "max_depth": 3, "max_children": 4, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "svuOnt", "name": "svuOntology", "status": "Classified", "topics": [ "university" ], "species": [ "Academic" ], "submission": { "id": 5416, "download_url": "media/ontologies/svuOnt/1/svuont.owl", "submission_id": 1, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-10-21T18:00:31.014438", "date_created": "2022-10-21T18:00:31.014423", "home_page": null, "version": "3", "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 855, "nb_properties": 7, "max_depth": 2, "max_children": 4, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SWEET", "name": "Semantic Web for Earth and Environment Technology Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 897, "download_url": "media/ontologies/SWEET/2/sweet.owl", "submission_id": 2, "domain": null, "description": "The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). Originally developed by NASA Jet Propulsion Labs under Rob Raskin, SWEET is now officially under the governance of the ESIP foundation. ", "documentation": "http://sweet.jpl.nasa.gov/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-29T02:29:11", "date_created": "2017-11-29T02:29:11", "home_page": "https://github.com/ESIPFed/sweet/blob/master/README.md", "version": "3.1.0", "has_ontology_language": "OWL", "nb_classes": 4543, "nb_individuals": 2020, "nb_properties": 327, "max_depth": 11, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SWO", "name": "Software ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5708, "download_url": "media/ontologies/SWO/32/swo.owl", "submission_id": 32, "domain": "information technology", "description": "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/25068035", "title": "The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation" } ], "products": [ { "id": "swo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/swo.owl" }, { "id": "swo.json", "ontology_purl": "http://purl.obolibrary.org/obo/swo.json" } ], "taxon": null, "date_released": "2023-03-06T15:11:42.465746", "date_created": "2023-03-06T15:11:42.465757", "home_page": "https://github.com/allysonlister/swo", "version": null, "has_ontology_language": "OWL", "nb_classes": 1971, "nb_individuals": 446, "nb_properties": 161, "max_depth": 16, "max_children": 677, "avg_children": 11, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "ecbf9eabd3ccad51ba26c0667bf1258a" } }, { "acronym": "STUFF", "name": "Stuff Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 475, "download_url": "media/ontologies/STUFF/3/stuff.owl", "submission_id": 3, "domain": null, "description": "a core ontology of types of macroscopic stuff (types of masses/matter)", "documentation": "http://www.meteck.org/stuff.html", "publication": "EKAW 2014 paper \"A Core Ontology of Macroscopic Stuff\"", "publications": null, "products": null, "taxon": null, "date_released": "2016-07-16T01:33:44", "date_created": "2016-07-16T01:33:44", "home_page": "http://www.meteck.org/stuff.html", "version": "1.5", "has_ontology_language": "OWL", "nb_classes": 1210, "nb_individuals": 2622, "nb_properties": 72, "max_depth": 7, "max_children": 506, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SYMP", "name": "Symptom Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6637, "download_url": "media/ontologies/SYMP/42/symp.owl", "submission_id": 42, "domain": "health", "description": "An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/19850722", "title": "GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/34755882", "title": "The Human Disease Ontology 2022 update" } ], "products": [ { "id": "symp.owl", "ontology_purl": "http://purl.obolibrary.org/obo/symp.owl" }, { "id": "symp.obo", "ontology_purl": "http://purl.obolibrary.org/obo/symp.obo" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2024-06-03T14:23:38.973077", "date_created": "2024-06-03T14:23:38.973080", "home_page": "http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page", "version": null, "has_ontology_language": "OWL", "nb_classes": 1019, "nb_individuals": 0, "nb_properties": 1, "max_depth": 8, "max_children": 126, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "556a30cfd3e8ee54e9d7b699aa2db99c" } }, { "acronym": "SYN", "name": "Sage Bionetworks Synapse Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 598, "download_url": "media/ontologies/SYN/3/syn.owl", "submission_id": 3, "domain": null, "description": "The controlled vocabulary used for various entity properties in the Synapse platform.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-11-15T08:00:00", "date_created": "2013-01-07T20:28:04", "home_page": null, "version": ".3", "has_ontology_language": "OWL", "nb_classes": 14462, "nb_individuals": 0, "nb_properties": 2, "max_depth": 30, "max_children": 1041, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECGF", "name": "ECG Findings", "status": "Classified", "topics": null, "species": null, "submission": { "id": 280, "download_url": "media/ontologies/ECGF/1/ecgf.owl", "submission_id": 1, "domain": null, "description": "This is a subset of the ECG Ontology, focused on two classification systems used extensively in heart diseases research.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-08-16T07:00:00", "date_created": "2011-08-16T14:02:12", "home_page": "http://www.cvrgrid.org", "version": "1", "has_ontology_language": "OWL", "nb_classes": 219, "nb_individuals": 0, "nb_properties": 72, "max_depth": 5, "max_children": 24, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECGT", "name": "ECG Terms", "status": "Classified", "topics": null, "species": null, "submission": { "id": 98, "download_url": "media/ontologies/ECGT/5/ecgt.owl", "submission_id": 5, "domain": null, "description": "This is a listing of all the terms within the ECG Ontology, to make it easier to search for a term to annotate an ECG", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-09-09T07:00:00", "date_created": "2014-09-12T14:54:32", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 711, "nb_individuals": 0, "nb_properties": 72, "max_depth": 10, "max_children": 24, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECM4M-MD-VOCABS", "name": "EarthCube M4M Metadata Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6218, "download_url": "media/ontologies/ECM4M-MD-VOCABS/4/ecm4m-md-vocabs.skos", "submission_id": 4, "domain": null, "description": "Collection of EarthCube M4M vocabularies for sample metadata definitions. ", "documentation": "https://github.com/go-fair-us/EarthCubeM4M", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-09-09T01:04:51", "date_created": "2022-09-09T01:04:53", "home_page": "https://github.com/go-fair-us/EarthCubeM4M", "version": "0.1.2", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 30, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECO", "name": "Evidence and Conclusion Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8083, "download_url": "media/ontologies/ECO/118/eco.owl", "submission_id": 118, "domain": "investigations", "description": "An ontology for experimental and other evidence statements.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/34986598", "title": "ECO: the Evidence and Conclusion Ontology, an update for 2022.", "preferred": true }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/30407590", "title": "ECO, the Evidence & Conclusion Ontology: community standard for evidence information." }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/25052702", "title": "Standardized description of scientific evidence using the Evidence Ontology (ECO)" } ], "products": [ { "id": "eco.owl", "ontology_purl": "http://purl.obolibrary.org/obo/eco.owl" }, { "id": "eco.obo", "ontology_purl": "http://purl.obolibrary.org/obo/eco.obo" } ], "taxon": null, "date_released": "2026-04-06T12:48:45.587614", "date_created": "2026-04-06T12:48:45.587616", "home_page": "https://www.evidenceontology.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 3355, "nb_individuals": 18, "nb_properties": 48, "max_depth": 13, "max_children": 119, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "1a5a24a581b8e331560d28d6c5063347" } }, { "acronym": "ECOCORE", "name": "An ontology of core ecological entities", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4948, "download_url": "media/ontologies/ECOCORE/8/ecocore.owl", "submission_id": 8, "domain": "environment", "description": "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ecocore.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ecocore.owl" }, { "id": "ecocore.obo", "ontology_purl": "http://purl.obolibrary.org/obo/ecocore.obo" } ], "taxon": null, "date_released": "2022-03-14T12:35:11.511245", "date_created": "2022-03-14T12:35:11.511260", "home_page": "https://github.com/EcologicalSemantics/ecocore", "version": null, "has_ontology_language": "OWL", "nb_classes": 5586, "nb_individuals": 17, "nb_properties": 295, "max_depth": 38, "max_children": 252, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "65b8d1060354f44ddc35b591485c368c" } }, { "acronym": "WBPHENOTYPE", "name": "C. elegans phenotype", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7544, "download_url": "media/ontologies/WBPHENOTYPE/84/wbphenotype.owl", "submission_id": 84, "domain": "phenotype", "description": "A structured controlled vocabulary of <i>Caenorhabditis elegans</i> phenotypes", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/21261995", "title": "Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community." } ], "products": [ { "id": "wbphenotype.owl", "ontology_purl": "http://purl.obolibrary.org/obo/wbphenotype.owl" }, { "id": "wbphenotype.obo", "ontology_purl": "http://purl.obolibrary.org/obo/wbphenotype.obo" }, { "id": "wbphenotype/wbphenotype-base.owl", "ontology_purl": "http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-base.owl" } ], "taxon": { "id": "NCBITaxon:6237", "label": "Caenorhabditis" }, "date_released": "2025-08-18T12:52:15.586425", "date_created": "2025-08-18T12:52:15.586431", "home_page": "https://github.com/obophenotype/c-elegans-phenotype-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 6536, "nb_individuals": 57, "nb_properties": 147, "max_depth": 15, "max_children": 131, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "2a049d82623a4f10c14fb1324c5a7964" } }, { "acronym": "WB-LS", "name": "C. elegans Development Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 829, "download_url": "media/ontologies/WB-LS/49/wb-ls.obo", "submission_id": 49, "domain": null, "description": "A structured controlled vocabulary of the development of <i>Caenorhabditis elegans</i>.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-16T02:46:44", "date_created": "2017-11-16T02:46:44", "home_page": "http://www.wormbase.org/", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 752, "nb_individuals": 0, "nb_properties": 3, "max_depth": 7, "max_children": 663, "avg_children": 21, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WBLS", "name": "C. elegans development ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7543, "download_url": "media/ontologies/WBLS/37/wbls.owl", "submission_id": 37, "domain": "anatomy and development", "description": "A structured controlled vocabulary of the development of <i>Caenorhabditis elegans</i>.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/31642470", "title": "WormBase: a modern Model Organism Information Resource" } ], "products": [ { "id": "wbls.owl", "ontology_purl": "http://purl.obolibrary.org/obo/wbls.owl" }, { "id": "wbls.obo", "ontology_purl": "http://purl.obolibrary.org/obo/wbls.obo" } ], "taxon": { "id": "NCBITaxon:6237", "label": "Caenorhabditis" }, "date_released": "2025-08-18T12:51:51.036532", "date_created": "2025-08-18T12:51:51.036535", "home_page": "https://github.com/obophenotype/c-elegans-development-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 797, "nb_individuals": 48, "nb_properties": 116, "max_depth": 8, "max_children": 678, "avg_children": 31, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "01c4fca26a3de6a762c6b82e6550d811" } }, { "acronym": "MCCL", "name": "Cell Line Ontology [by Mahadevan]", "status": "Classified", "topics": null, "species": null, "submission": { "id": 328, "download_url": "media/ontologies/MCCL/2/mccl.owl", "submission_id": 2, "domain": null, "description": "Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. The need for ontologies that provide a systematic arrangement of available data and allow cross talk across various related domains is gaining momentum. In this backdrop, we have developed a comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-08-05T00:00:00", "date_created": "2014-08-05T04:29:27", "home_page": "http://www.molecularconnections.com", "version": "2", "has_ontology_language": "OWL", "nb_classes": 5475, "nb_individuals": 0, "nb_properties": 17, "max_depth": 9, "max_children": 2155, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TAO", "name": "Teleost Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 675, "download_url": "media/ontologies/TAO/135/tao.obo", "submission_id": 135, "domain": null, "description": "TAO is a multispecies anatomy ontology for teleost fishes. Originally seeded from ZFA, but intended to cover terms relevant to other taxa.", "documentation": null, "publication": "http://dx.doi.org/10.1093/sysbio/syq013", "publications": null, "products": null, "taxon": null, "date_released": "2015-08-20T00:00:00", "date_created": "2013-08-23T01:10:25", "home_page": "https://www.nescent.org/phenoscape/Main_Page", "version": "2012-08-10", "has_ontology_language": "OBO", "nb_classes": 3428, "nb_individuals": 0, "nb_properties": 24, "max_depth": 12, "max_children": 78, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECP", "name": "Electronic Care Plan", "status": "Classified", "topics": null, "species": null, "submission": { "id": 681, "download_url": "media/ontologies/ECP/2/ecp.owl", "submission_id": 2, "domain": null, "description": "Our focus in this work is to define in a formal way (ontology-based) and platform independent representative metadata and relationships of care plans. This approach has as goal to work as an umbrella over all these systems and provides some advantages regarding the management, the organization and the searching of formal care plans.", "documentation": "http://vowl.visualdataweb.org/webvowl/index.html#iri=http://iris.med.duth.gr/research/ecp/ontology/eCP.owl", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-10-13T00:00:00", "date_created": "2015-10-13T17:33:59", "home_page": "http://iris.med.duth.gr/research/ecp/ontology", "version": "0.6", "has_ontology_language": "OWL", "nb_classes": 32, "nb_individuals": 13, "nb_properties": 27, "max_depth": 2, "max_children": 8, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ECTO", "name": "Environmental conditions, treatments and exposures ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7973, "download_url": "media/ontologies/ECTO/13/ecto.owl", "submission_id": 13, "domain": "environment", "description": "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ecto.owl", "name": "Environmental conditions, treatments and exposures ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/ecto.owl" }, { "id": "ecto.obo", "name": "Environmental conditions, treatments and exposures ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/ecto.obo" }, { "id": "ecto.json", "name": "Environmental conditions, treatments and exposures ontology additional release in OBOJSon format", "ontology_purl": "http://purl.obolibrary.org/obo/ecto.json" }, { "id": "ecto/ecto-base.owl", "name": "Environmental conditions, treatments and exposures ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/ecto/ecto-base.owl" }, { "id": "ecto/ecto-base.obo", "name": "Environmental conditions, treatments and exposures ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/ecto/ecto-base.obo" }, { "id": "ecto/ecto-base.json", "name": "Environmental conditions, treatments and exposures ontology additional release in OBOJSon format", "ontology_purl": "http://purl.obolibrary.org/obo/ecto/ecto-base.json" } ], "taxon": null, "date_released": "2026-02-23T12:47:44.863420", "date_created": "2026-02-23T12:47:44.863423", "home_page": "https://github.com/EnvironmentOntology/environmental-exposure-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 11772, "nb_individuals": 69, "nb_properties": 216, "max_depth": 36, "max_children": 449, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d4c06e2cfa7239773a54aab2c2ce19c6" } }, { "acronym": "ERO", "name": "eagle-i resource ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 991, "download_url": "media/ontologies/ERO/15/ero.owl", "submission_id": 15, "domain": "resources", "description": "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.", "documentation": "https://open.med.harvard.edu/wiki/display/eaglei/Ontology", "publication": null, "publications": null, "products": [ { "id": "ero.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ero.owl" } ], "taxon": null, "date_released": "2017-12-13T00:57:22.660537", "date_created": "2017-12-13T00:57:22.660559", "home_page": "https://open.med.harvard.edu/wiki/display/eaglei/Ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 4061, "nb_individuals": 22, "nb_properties": 135, "max_depth": 16, "max_children": 438, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "b90a1e23bcdd051809c1c2cc8dcf056c" } }, { "acronym": "ESFO", "name": "Enzyme Structure Function Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 702, "download_url": "media/ontologies/ESFO/1/esfo.owl", "submission_id": 1, "domain": null, "description": "The ESFO provides a new paradigm for organizing enzyme sequence, structure, and function information, whereby specific elements of enzyme sequence and structure are mapped to specific conserved aspects of function, thus facilitating the functional annotation of uncharacterized enzymes. The ESFO helps prevent misannotation by emphasizing annotation of enzymes only at the level of functional granularity warranted by available information.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-10-24T00:00:00", "date_created": "2016-10-24T16:55:28", "home_page": "http://sfld.rbvi.ucsf.edu/", "version": "1", "has_ontology_language": "OWL", "nb_classes": 22, "nb_individuals": 0, "nb_properties": 139, "max_depth": 1, "max_children": 15, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ETANC", "name": "ETHIOPIANC", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4641, "download_url": "media/ontologies/ETANC/2/etanc.skos", "submission_id": 2, "domain": null, "description": "Ethiopian Antenatal care (ANC) register vocabulary ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-02T00:00:00", "date_created": "2021-09-03T06:33:17", "home_page": null, "version": "0.2", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 52, "nb_properties": 12, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FMA-SUBSET", "name": "Foundational Model of Anatomy (subset)", "status": "Classified", "topics": [], "species": [], "submission": { "id": 110, "download_url": "media/ontologies/FMA-SUBSET/1/fma-subset.obo", "submission_id": 1, "domain": null, "description": "Obo format translation of the FMA, omitting all relationships other than is_a, part_of and has_part. Future versions of fma_obo will include more relationships", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-09-01T07:00:00", "date_created": "2009-09-19T01:01:32", "home_page": null, "version": "2", "has_ontology_language": "OBO", "nb_classes": 78977, "nb_individuals": 0, "nb_properties": 7, "max_depth": 19, "max_children": 218, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FMPM", "name": "Food Matrix for Predictive Microbiology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1703, "download_url": "media/ontologies/FMPM/5/fmpm.owl", "submission_id": 5, "domain": null, "description": "Food matrix ontology for predictive microbiology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-07-26T00:00:00", "date_created": "2018-07-26T10:41:41", "home_page": null, "version": "0.9.2", "has_ontology_language": "OWL", "nb_classes": 162, "nb_individuals": 0, "nb_properties": 1, "max_depth": 8, "max_children": 14, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FO", "name": "Fern Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 459, "download_url": "media/ontologies/FO/6/fo.owl", "submission_id": 6, "domain": null, "description": "Fern Ontology (FO) is a controlled and structured vocabulary of fern specific anatomy and lifecycle. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-03-16T00:00:00", "date_created": "2015-03-16T05:25:09", "home_page": null, "version": "0.05", "has_ontology_language": "OWL", "nb_classes": 32, "nb_individuals": 0, "nb_properties": 5, "max_depth": 9, "max_children": 9, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEMO", "name": "Neural ElectroMagnetic Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 517, "download_url": "media/ontologies/NEMO/24/nemo.owl", "submission_id": 24, "domain": null, "description": "Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). Working (unstable), Release (stable), and Old (archival) versions of NEMO can be found on sourceforge: http://sourceforge.net/projects/nemoontologies/.", "documentation": "https://portal.nemo.nic.uoregon.edu", "publication": "http://nemo.nic.uoregon.edu/wiki/Publications", "publications": null, "products": null, "taxon": null, "date_released": "2013-10-21T00:00:00", "date_created": "2013-10-21T14:51:44", "home_page": "http://nemo.nic.uoregon.edu", "version": "v3.10", "has_ontology_language": "OWL", "nb_classes": 1851, "nb_individuals": 120, "nb_properties": 98, "max_depth": 14, "max_children": 56, "avg_children": 4, "classifiable": false, "nb_inconsistent": 0, "indexed": false, "md5sum": null } }, { "acronym": "FOO", "name": "Forest Observatory Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7067, "download_url": "media/ontologies/FOO/41/foo.owl", "submission_id": 41, "domain": null, "description": "The Forest Observatory Ontology (FOO) i s an ontology for describing wildlife data generated by sensors. FOO's scope evolves around the Internet of Things (IoT) and wildlife habitats. To illustrate our datasets of interest, we modelled the concept to represent \"sensors observing animals and land\". These sensors generate observations. For example, the animal GPS collar tracks an elephant and records its geo-location observations for different and equally spaced time intervals and temperature every specified time interval. We adopted classes and properties from SOSA and BBC wildlife ontologies to model the domain coverage.", "documentation": "https://w3id.org/def/foo# https://w3id.org/def/fooDocs#", "publication": "https://link.springer.com/chapter/10.1007/978-3-031-43458-7_29", "publications": null, "products": null, "taxon": null, "date_released": "2024-12-11T02:04:47", "date_created": "2024-12-11T02:04:49", "home_page": "https://ontology.forest-observatory.org", "version": "BBC Wildlife Ontology Reused 26 June 2024", "has_ontology_language": "OWL", "nb_classes": 81, "nb_individuals": 176, "nb_properties": 32, "max_depth": 7, "max_children": 37, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FOVT", "name": "FuTRES Ontology of Vertebrate Traits", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8045, "download_url": "media/ontologies/FOVT/8/fovt.owl", "submission_id": 8, "domain": "phenotype", "description": "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "fovt.owl", "name": "FuTRES Ontology of Vertebrate Traits main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/fovt.owl" }, { "id": "fovt.obo", "name": "FuTRES Ontology of Vertebrate Traits additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/fovt.obo" }, { "id": "fovt/fovt-base.owl", "name": "FuTRES Ontology of Vertebrate Traits main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/fovt/fovt-base.owl" }, { "id": "fovt/fovt-base.obo", "name": "FuTRES Ontology of Vertebrate Traits additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/fovt/fovt-base.obo" } ], "taxon": null, "date_released": "2026-03-23T12:16:35.405722", "date_created": "2026-03-23T12:16:35.405726", "home_page": "https://github.com/futres/fovt", "version": null, "has_ontology_language": "OWL", "nb_classes": 11981, "nb_individuals": 383, "nb_properties": 321, "max_depth": 35, "max_children": 212, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "24d4a9c59149befbac3f195c959a543b" } }, { "acronym": "FRMO", "name": "Fall Risk Management Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7219, "download_url": "media/ontologies/FRMO/19/frmo.owl", "submission_id": 19, "domain": null, "description": "We have developed an ontology representing major fall risk management entities to support approaches to text mining, data descriptions and linkage in the context of fall risk management. This ontology contains concepts related to fall risk factors, fall risk interventions, and fall consequences.\r\n\r\nTitle: Developing an Ontology Representing Fall Risk Management Domain Knowledge\r\nLink to the article: https://link.springer.com/article/10.1007/s10916-024-02062-2", "documentation": null, "publication": "https://link.springer.com/article/10.1007/s10916-024-02062-2", "publications": null, "products": null, "taxon": null, "date_released": "2023-03-28T00:00:00", "date_created": "2025-02-28T01:41:54", "home_page": null, "version": "09.10", "has_ontology_language": "OWL", "nb_classes": 890, "nb_individuals": 2, "nb_properties": 44, "max_depth": 14, "max_children": 44, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FTC", "name": "Functional Therapeutic Chemical Classification System", "status": "Classified", "topics": null, "species": null, "submission": { "id": 256, "download_url": "media/ontologies/FTC/1/ftc.owl", "submission_id": 1, "domain": null, "description": "The Functional Therapeutic Chemical Classification System (FTC) defines over 20'000 mechanisms and modes of action for approuved drugs. The resource abstracts away from the traditional chemical structure-based approach and focuses solely on the mode of action of drugs. The classification sorts therapeutic agents based on their function in the human body.", "documentation": "https://www.ebi.ac.uk/chembl/ftc", "publication": "https://www.ebi.ac.uk/chembl/ftc", "publications": null, "products": null, "taxon": null, "date_released": "2016-02-15T00:00:00", "date_created": "2016-02-15T16:38:02", "home_page": "https://www.ebi.ac.uk/chembl/ftc", "version": "1", "has_ontology_language": "OWL", "nb_classes": 61426, "nb_individuals": 0, "nb_properties": 10, "max_depth": 16, "max_children": 25098, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FUNCTIONALH", "name": "NeuroMorpho.Org cell types function", "status": "Classified", "topics": null, "species": null, "submission": { "id": 635, "download_url": "media/ontologies/FUNCTIONALH/3/functionalh.owl", "submission_id": 3, "domain": null, "description": "A hierarchy of neuron types based on functional role.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-08-30T01:03:36", "date_created": "2016-08-30T01:03:36", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 11, "nb_properties": 0, "max_depth": 2, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "FYPO", "name": "Fission Yeast Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8088, "download_url": "media/ontologies/FYPO/486/fypo.owl", "submission_id": 486, "domain": "phenotype", "description": "FYPO is a formal ontology of phenotypes observed in fission yeast.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/23658422", "title": "FYPO: The Fission Yeast Phenotype Ontology." } ], "products": [ { "id": "fypo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/fypo.owl" }, { "id": "fypo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/fypo.obo" } ], "taxon": { "id": "NCBITaxon:4896", "label": "S. pombe" }, "date_released": "2026-04-06T12:58:32.454935", "date_created": "2026-04-06T12:58:32.454939", "home_page": "https://github.com/pombase/fypo", "version": null, "has_ontology_language": "OWL", "nb_classes": 10517, "nb_individuals": 18, "nb_properties": 21, "max_depth": 15, "max_children": 2236, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "4db4227507ea263641cccba61f8196e9" } }, { "acronym": "MAXO", "name": "Medical Action Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7882, "download_url": "media/ontologies/MAXO/46/maxo.owl", "submission_id": 46, "domain": "health", "description": "The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "maxo.owl", "name": "Medical Action Ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/maxo.owl" }, { "id": "maxo.obo", "name": "Medical Action Ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/maxo.obo" }, { "id": "maxo.json", "name": "Medical Action Ontology additional release in OBOJSon format", "ontology_purl": "http://purl.obolibrary.org/obo/maxo.json" }, { "id": "maxo/maxo-base.owl", "name": "Medical Action Ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/maxo/maxo-base.owl" }, { "id": "maxo/maxo-base.obo", "name": "Medical Action Ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/maxo/maxo-base.obo" }, { "id": "maxo/maxo-base.json", "name": "Medical Action Ontology additional release in OBOJSon format", "ontology_purl": "http://purl.obolibrary.org/obo/maxo/maxo-base.json" } ], "taxon": null, "date_released": "2026-01-19T19:40:39.703582", "date_created": "2026-01-19T19:40:39.703585", "home_page": "https://github.com/monarch-initiative/MAxO", "version": null, "has_ontology_language": "OWL", "nb_classes": 7120, "nb_individuals": 0, "nb_properties": 212, "max_depth": 34, "max_children": 126, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "49d239fdbf2b6a38f0b44d9d0147d1d2" } }, { "acronym": "MDIM", "name": "Mapping of Drug Names, ICD-11 and MeSH 2021", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4297, "download_url": "media/ontologies/MDIM/2/mdim.owl", "submission_id": 2, "domain": null, "description": "The Mapping of Drug Names, ICD-11 and MeSH 2021 (MDIM) provides owl:sameAs relationships of similar concepts for Drug Names from the DrugBank vocabulary (https://go.drugbank.com/releases/latest#open-data), the International Classification of Diseases Version 11 (https://icd.who.int/) and the Medical Subject Headings (http://id.nlm.nih.gov/mesh/). Two concepts are considered similar if they share the same concept name or the same synonym. Additional synonyms for each of the concepts are generated using the Snowball stemming algorithm. The software implementation is available on github within the Maven project snoke in the module snoke.ontology: https://github.com/bernd-mueller/snoke/tree/master/snoke.ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-01-15T00:00:00", "date_created": "2021-02-23T11:14:19", "home_page": "https://www.zbmed.de/", "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 110124, "nb_individuals": 20932, "nb_properties": 0, "max_depth": 1, "max_children": 110124, "avg_children": 110124, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MDM", "name": "Mapping of Drug Names and MeSH 2022", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4957, "download_url": "media/ontologies/MDM/4/mdm.owl", "submission_id": 4, "domain": null, "description": "The Mapping of Drug Names and MeSH 2022 (MDM) provides owl:sameAs relationships of similar concepts for Drug Names from the DrugBank vocabulary (released 2022-01-03 under version 5.1.9: https://go.drugbank.com/releases/latest#open-data) and the Medical Subject Headings (2022 version: http://id.nlm.nih.gov/mesh/). Two concepts are considered similar if they share the same concept name or a common synonym. Additional synonyms are generated using the Snowball stemming algorithm. The software implementation is available on github within the Maven project SNoKE in the module snoke.ontology: https://github.com/bernd-mueller/snoke/tree/master/snoke.ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-03-30T00:00:00", "date_created": "2022-03-09T14:50:54", "home_page": "https://www.zbmed.de/", "version": "0.33", "has_ontology_language": "OWL", "nb_classes": 44789, "nb_individuals": 5480, "nb_properties": 0, "max_depth": 1, "max_children": 44789, "avg_children": 44789, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MEGO", "name": "Mobile Genetic Element Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 410, "download_url": "media/ontologies/MEGO/2/mego.obo", "submission_id": 2, "domain": null, "description": "MeGO is a Gene Ontology under construction dedicated to the functions of mobile genetic elements. The terms defined in MeGO are used to annotate phage and plasmid protein families in ACLAME.", "documentation": "http://aclame.ulb.ac.be/Classification/mego.html", "publication": "http://aclame.ulb.ac.be/Resources/publications.html", "publications": null, "products": null, "taxon": null, "date_released": "2009-05-14T07:00:00", "date_created": "2013-06-27T16:42:33", "home_page": "http://aclame.ulb.ac.be", "version": "2_1", "has_ontology_language": "OBO", "nb_classes": 375, "nb_individuals": 0, "nb_properties": 1, "max_depth": 6, "max_children": 36, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MELLO-D", "name": "MEdical LifeLog Ontology for people with Disability", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6934, "download_url": "media/ontologies/MELLO-D/6/mello-d.owl", "submission_id": 6, "domain": null, "description": "MEdical LifeLog Ontology for the people with Disability", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-11-08T00:00:00", "date_created": "2024-10-09T22:46:50", "home_page": null, "version": "1.7", "has_ontology_language": "OWL", "nb_classes": 10683, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 3330, "avg_children": 108, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TADS", "name": "Tick Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3409, "download_url": "media/ontologies/TADS/18/tads.owl", "submission_id": 18, "domain": "anatomy", "description": "The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i>", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "tads.owl", "ontology_purl": "http://purl.obolibrary.org/obo/tads.owl" }, { "id": "tads.obo", "ontology_purl": "http://purl.obolibrary.org/obo/tads.obo" } ], "taxon": { "id": "NCBITaxon:6939", "label": "Ixodidae" }, "date_released": "2020-03-06T11:56:54.591941", "date_created": "2020-03-06T11:56:54.591963", "home_page": "https://www.vectorbase.org/ontology-browser", "version": null, "has_ontology_language": "OWL", "nb_classes": 629, "nb_individuals": 0, "nb_properties": 1, "max_depth": 7, "max_children": 360, "avg_children": 22, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "6b45e10f03db05fcbcce9c0b0ca8d1c9" } }, { "acronym": "MCBCC", "name": "Breast Tissue Cell Lines Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 457, "download_url": "media/ontologies/MCBCC/2/mcbcc.owl", "submission_id": 2, "domain": null, "description": "Contains a comprehensive list of cell lines derived from breast tissue, both normal and pathological. The ontology in built in OWL with cross relation to classes- genetic variation, pathological condition, genes, chemicals and drugs. The relations built enable semantic query across different classes", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-07-30T07:00:00", "date_created": "2010-07-30T03:59:39", "home_page": "www.molecularconnections.com", "version": "2", "has_ontology_language": "OWL", "nb_classes": 385, "nb_individuals": 0, "nb_properties": 27, "max_depth": 5, "max_children": 153, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NCIT", "name": "NCI Thesaurus OBO Edition", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8049, "download_url": "media/ontologies/NCIT/80/ncit.owl", "submission_id": 80, "domain": "health", "description": "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ncit.owl", "title": "NCIt OBO Edition OWL format", "description": "A direct transformation of the standard NCIt content using OBO-style term and ontology IRIs and annotation properties.", "ontology_purl": "http://purl.obolibrary.org/obo/ncit.owl" }, { "id": "ncit.obo", "title": "NCIt OBO Edition OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/ncit.obo" } ], "taxon": null, "date_released": "2026-03-23T13:41:38.826326", "date_created": "2026-03-23T13:41:38.826330", "home_page": "https://github.com/ncit-obo-org/ncit-obo-edition", "version": null, "has_ontology_language": "OWL", "nb_classes": 209911, "nb_individuals": 0, "nb_properties": 97, "max_depth": 22, "max_children": 3234, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c265ca488a84f16cd997cdcd52770238" } }, { "acronym": "NEGO", "name": "Nutritional Epidemiological STandard", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1725, "download_url": "media/ontologies/NEGO/1/nego.owl", "submission_id": 1, "domain": null, "description": "It represents standards for nutritional epidemiological studies in ontology format. \r\nIn the strict sense, it is not an ontology. Its hierarchy follows structure of each standard, not OWL rules.", "documentation": null, "publication": "https://academic.oup.com/jn/article/148/2/285/4913031", "publications": null, "products": null, "taxon": null, "date_released": "2018-08-04T00:00:00", "date_created": "2018-08-04T13:36:06", "home_page": "https://github.com/cyang0128/Nutritional-epidemiological-ontologies", "version": "V1.0", "has_ontology_language": "OWL", "nb_classes": 129, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 17, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TEMPO", "name": "TempO", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5724, "download_url": "media/ontologies/TEMPO/3/tempo.owl", "submission_id": 3, "domain": null, "description": "TempO is a lightweight ontology for describing temporal validity and efficacy according to a tritemporal data model.", "documentation": "http://purl.org/tempo/html", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-03-10T02:20:00", "date_created": "2023-03-10T02:20:01", "home_page": "https://github.com/hroptatyr/tempo/", "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 1, "nb_individuals": 0, "nb_properties": 1, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TESTEX", "name": "test1", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4429, "download_url": "media/ontologies/TESTEX/1/testex.owl", "submission_id": 1, "domain": null, "description": "first ontology creation format", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-21T00:00:00", "date_created": "2021-04-21T18:26:34", "home_page": null, "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 102, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 28, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TESTING_BOSCO", "name": "Test_bosco", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6418, "download_url": "media/ontologies/TESTING_BOSCO/12/testing_bosco.owl", "submission_id": 12, "domain": null, "description": "Testing upload", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-01-31T00:00:00", "date_created": "2024-02-16T16:53:36", "home_page": null, "version": "0.9.2", "has_ontology_language": "OWL", "nb_classes": 5184, "nb_individuals": 0, "nb_properties": 0, "max_depth": 13, "max_children": 207, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TESTLEARN", "name": "testontologyforlearning", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7707, "download_url": "media/ontologies/TESTLEARN/1/testlearn.owl", "submission_id": 1, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-11-02T00:00:00", "date_created": "2025-11-02T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TEST-M4M20-PAV", "name": "test-m4m20-subjects-pav", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5150, "download_url": "media/ontologies/TEST-M4M20-PAV/1/test-m4m20-pav.skos", "submission_id": 1, "domain": null, "description": "Test", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-06-08T00:00:00", "date_created": "2022-06-08T17:47:46", "home_page": null, "version": "0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 2, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TGMA", "name": "Mosquito gross anatomy ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3410, "download_url": "media/ontologies/TGMA/18/tgma.owl", "submission_id": 18, "domain": "anatomy", "description": "A structured controlled vocabulary of the anatomy of mosquitoes.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "tgma.owl", "ontology_purl": "http://purl.obolibrary.org/obo/tgma.owl" }, { "id": "tgma.obo", "ontology_purl": "http://purl.obolibrary.org/obo/tgma.obo" } ], "taxon": { "id": "NCBITaxon:44484", "label": "Anopheles" }, "date_released": "2020-03-06T11:58:05.219277", "date_created": "2020-03-06T11:58:05.219310", "home_page": "https://www.vectorbase.org/ontology-browser", "version": null, "has_ontology_language": "OWL", "nb_classes": 1865, "nb_individuals": 0, "nb_properties": 3, "max_depth": 7, "max_children": 1122, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "7d1320828369919b51c6d7704f430f82" } }, { "acronym": "THESISDEMO", "name": "thesisdemo", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7098, "download_url": "media/ontologies/THESISDEMO/1/thesisdemo.owl", "submission_id": 1, "domain": null, "description": "This ontology is for thesis demo presentation", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-01-04T00:00:00", "date_created": "2025-01-04T20:03:09", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 6, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GCO", "name": "Genome Component Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 713, "download_url": "media/ontologies/GCO/3/gco.owl", "submission_id": 3, "domain": null, "description": "The Genome Component Ontology is intended to define the abstract division of the total genetic information of an organism by its physical separation into different components, thereby providing a high level reference point to which more specific descriptions of the characteristics of these components can be linked.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-05-22T07:00:00", "date_created": "2013-05-23T01:11:53", "home_page": null, "version": "0.2", "has_ontology_language": "OWL", "nb_classes": 5, "nb_individuals": 0, "nb_properties": 3, "max_depth": 1, "max_children": 3, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GDCO", "name": "Data Collection Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 41, "download_url": "media/ontologies/GDCO/1/gdco.owl", "submission_id": 1, "domain": null, "description": "The Data Collection Ontology (DCO) is an ontology designed for data collection providing classes and relations on top of the Basic Formal Ontology (BFO) to facilitate data collection processes, subjects, and data anaylsis through the use of classifiers.\r\n\r\nDCO is based on the notion of reasoning to validate incoming data through their definitions based on classifiers.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-08-09T00:00:00", "date_created": "2017-08-09T21:32:29", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 73, "nb_individuals": 0, "nb_properties": 38, "max_depth": 7, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GENE-CDS", "name": "Genomic Clinical Decision Support Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 92, "download_url": "media/ontologies/GENE-CDS/1/gene-cds.owl", "submission_id": 1, "domain": null, "description": "The Genomic CDS ontology aims to unify several functionalities in a single resource, being:\r\n* A knowledge base for clinical pharmacogenomics/pharmacogenetics that can be used for question-answering (e.g., which SNPs are associated with this drug?)\r\n* A rule base for clinical decision support (e.g., inferring that a patient with a specific set of SNPs requires a lowered dose of warfarin and generating a CDS message that can be viewed by clinicians)\r\n* A tool for checking data consistency (e.g., highlighting which allele definitions in PharmGKB are overlapping, or which clinical decision support rules are matching the same group of patients)", "documentation": "http://www.genomic-cds.org/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-11-21T08:00:00", "date_created": "2012-11-21T15:07:04", "home_page": "http://samwald.info", "version": "0.8.0", "has_ontology_language": "OWL", "nb_classes": 2265, "nb_individuals": 0, "nb_properties": 2, "max_depth": 3, "max_children": 576, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MFMO", "name": "Mammalian Feeding Muscle Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1015, "download_url": "media/ontologies/MFMO/2/mfmo.owl", "submission_id": 2, "domain": "anatomy", "description": "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mfmo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mfmo.owl" } ], "taxon": { "id": "NCBITaxon:40674", "label": "Mammalian" }, "date_released": "2017-12-13T01:56:41.876359", "date_created": "2017-12-13T01:56:41.876380", "home_page": "http://feedexp.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 293, "nb_individuals": 33, "nb_properties": 549, "max_depth": 10, "max_children": 37, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "e75de64ec253ad42783c05f39e83e029" } }, { "acronym": "MFO", "name": "Medaka Fish Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 575, "download_url": "media/ontologies/MFO/14/mfo.obo", "submission_id": 14, "domain": null, "description": "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, <i>Oryzias latipes</i>.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-06-09T07:00:00", "date_created": "2011-06-10T01:03:06", "home_page": null, "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 4358, "nb_individuals": 0, "nb_properties": 3, "max_depth": 4, "max_children": 46, "avg_children": 14, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MFOEM", "name": "Emotion Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7664, "download_url": "media/ontologies/MFOEM/44/mfoem.owl", "submission_id": 44, "domain": "health", "description": "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mfoem.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mfoem.owl" } ], "taxon": null, "date_released": "2025-10-20T13:08:54.685673", "date_created": "2025-10-20T13:08:54.685676", "home_page": "https://github.com/jannahastings/emotion-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 625, "nb_individuals": 19, "nb_properties": 22, "max_depth": 13, "max_children": 27, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "4a7fcf2b9d2df78579b5b7a207841cda" } }, { "acronym": "MHCRO", "name": "MHC Restriction Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 100, "download_url": "media/ontologies/MHCRO/1/mhcro.owl", "submission_id": 1, "domain": null, "description": "The MHC Restriction Ontology (MRO) is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-12-15T00:00:00", "date_created": "2017-09-21T22:54:11", "home_page": "https://github.com/IEDB/MRO", "version": "2016-12-15", "has_ontology_language": "OWL", "nb_classes": 2018, "nb_individuals": 0, "nb_properties": 25, "max_depth": 8, "max_children": 356, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MHMO", "name": "Mental Health Management Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5080, "download_url": "media/ontologies/MHMO/9/mhmo.owl", "submission_id": 9, "domain": null, "description": "This ontology can assist in the management of mental healthcare networks. It allows the integration and semantic interoperability between independent health databases, promotes the ability to infer knowledge in this domain, enables the generation of relevant indicators for mental health to improve decision-making, and increases mental health management and planning efficiency and effectiveness. The MHMO is developed by the Laboratory of Health Intelligence - Ribeirao Preto Medical School, University of Sao Paulo, Brazil.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-03-18T00:00:00", "date_created": "2022-05-11T13:01:53", "home_page": "http://mental-ontology.com/", "version": "3.2", "has_ontology_language": "OWL", "nb_classes": 373, "nb_individuals": 100, "nb_properties": 33, "max_depth": 10, "max_children": 17, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MI", "name": "Molecular Interactions Controlled Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7933, "download_url": "media/ontologies/MI/135/mi.owl", "submission_id": 135, "domain": "investigations", "description": "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mi.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mi.owl" }, { "id": "mi.obo", "ontology_purl": "http://purl.obolibrary.org/obo/mi.obo" } ], "taxon": null, "date_released": "2026-02-02T12:53:20.419463", "date_created": "2026-02-02T12:53:20.419467", "home_page": "https://github.com/HUPO-PSI/psi-mi-CV", "version": null, "has_ontology_language": "OWL", "nb_classes": 1655, "nb_individuals": 0, "nb_properties": 0, "max_depth": 11, "max_children": 181, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "48042889b0fb376a47bfe7162acad55d" } }, { "acronym": "MIDO", "name": "Medical Imaging and Diagnostic Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5050, "download_url": "media/ontologies/MIDO/1/mido.owl", "submission_id": 1, "domain": null, "description": "MIDO is an OWL 2 ontology for creating a standardized format for modeling data in medical imaging tasks such as Disease Classification/ Diagnosis as well as Disease localization/segmentation\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-04-25T00:00:00", "date_created": "2022-04-25T23:32:03", "home_page": null, "version": "2015-11-20", "has_ontology_language": "OWL", "nb_classes": 51838, "nb_individuals": 24138, "nb_properties": 250, "max_depth": 23, "max_children": 173, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MIO", "name": "Myocardial Infarction Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7091, "download_url": "media/ontologies/MIO/7/mio.owl", "submission_id": 7, "domain": null, "description": "The myocardial infarction ontology (MIO) is a disease-specific ontology that characterizes the knowledge field of myocardial infarction.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-08-18T00:00:00", "date_created": "2024-12-18T09:25:48", "home_page": null, "version": "V1.0.0", "has_ontology_language": "OWL", "nb_classes": 3090, "nb_individuals": 3494, "nb_properties": 14, "max_depth": 17, "max_children": 400, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MIRNAO", "name": "microRNA Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 412, "download_url": "media/ontologies/MIRNAO/11/mirnao.owl", "submission_id": 11, "domain": null, "description": "An application ontology for microRNAs.", "documentation": "https://code.google.com/p/mirna-ontology/", "publication": "https://code.google.com/p/mirna-ontology/", "publications": null, "products": null, "taxon": null, "date_released": "2015-08-19T00:00:00", "date_created": "2013-12-10T15:31:29", "home_page": "https://code.google.com/p/mirna-ontology/", "version": "1.7", "has_ontology_language": "OWL", "nb_classes": 676, "nb_individuals": 0, "nb_properties": 13, "max_depth": 13, "max_children": 69, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MIRO", "name": "Mosquito insecticide resistance", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3375, "download_url": "media/ontologies/MIRO/1/miro.owl", "submission_id": 1, "domain": "environment", "description": "Application ontology for entities related to insecticide resistance in mosquitos", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "miro.owl", "ontology_purl": "http://purl.obolibrary.org/obo/miro.owl" } ], "taxon": { "id": "NCBITaxon:44484", "label": "Anopheles" }, "date_released": "2020-02-24T21:26:26.420935", "date_created": "2020-02-24T21:26:26.420956", "home_page": "http://anobase.vectorbase.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 4410, "nb_individuals": 126, "nb_properties": 17, "max_depth": 12, "max_children": 241, "avg_children": 13, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "15cc68eea5b37b8300b21105f2a2c9f1" } }, { "acronym": "MP", "name": "Mammalian Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8067, "download_url": "media/ontologies/MP/139/mp.owl", "submission_id": 139, "domain": "phenotype", "description": "Standard terms for annotating mammalian phenotypic data.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/40963406", "title": "Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22961259", "title": "The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/25825651", "title": "Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens" } ], "products": [ { "id": "mp.owl", "page": "https://github.com/mgijax/mammalian-phenotype-ontology/releases/tag/current", "title": "MP (OWL edition)", "description": "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies.", "ontology_purl": "http://purl.obolibrary.org/obo/mp.owl" }, { "id": "mp.obo", "page": "https://github.com/mgijax/mammalian-phenotype-ontology/releases/tag/current", "title": "MP (OBO edition)", "description": "A direct translation of the MP (OWL edition) into OBO format.", "ontology_purl": "http://purl.obolibrary.org/obo/mp.obo" }, { "id": "mp.json", "page": "https://github.com/mgijax/mammalian-phenotype-ontology/releases/tag/current", "title": "MP (obographs JSON edition)", "description": "For a description of the format see https://github.com/geneontology/obographs.", "ontology_purl": "http://purl.obolibrary.org/obo/mp.json" }, { "id": "mp/mp-base.owl", "page": "https://github.com/mgijax/mammalian-phenotype-ontology/releases/tag/current", "title": "MP Base Module", "description": "The main ontology plus axioms connecting to select external ontologies, excluding axioms from the the external ontologies themselves.", "ontology_purl": "http://purl.obolibrary.org/obo/mp/mp-base.owl" } ], "taxon": { "id": "NCBITaxon:40674", "label": "Mammalia" }, "date_released": "2026-03-30T12:12:36.697463", "date_created": "2026-03-30T12:12:36.697465", "home_page": "https://www.informatics.jax.org/vocab/mp_ontology/", "version": null, "has_ontology_language": "OWL", "nb_classes": 35099, "nb_individuals": 106, "nb_properties": 331, "max_depth": 35, "max_children": 510, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "759a9dc0fb017c62eeac5eae697985fb" } }, { "acronym": "MPATH", "name": "Mouse pathology ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3775, "download_url": "media/ontologies/MPATH/173/mpath.owl", "submission_id": 173, "domain": "health", "description": "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mpath.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mpath.owl" } ], "taxon": { "id": "NCBITaxon:10088", "label": "Mus" }, "date_released": "2020-07-20T12:31:43.034149", "date_created": "2020-07-20T12:31:43.034163", "home_page": "http://www.pathbase.net", "version": null, "has_ontology_language": "OWL", "nb_classes": 891, "nb_individuals": 0, "nb_properties": 2, "max_depth": 10, "max_children": 51, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "9197c3b190a0b804419e7d82097e22f7" } }, { "acronym": "MPIO", "name": "Minimum PDDI Information Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6133, "download_url": "media/ontologies/MPIO/5/mpio.owl", "submission_id": 5, "domain": "health", "description": "An ontology of minimum information regarding potential drug-drug interaction information.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "mpio.owl", "ontology_purl": "http://purl.obolibrary.org/obo/mpio.owl" } ], "taxon": null, "date_released": "2023-10-23T12:48:49.455721", "date_created": "2023-10-23T12:48:49.455730", "home_page": "https://github.com/MPIO-Developers/MPIO", "version": null, "has_ontology_language": "OWL", "nb_classes": 51, "nb_individuals": 18, "nb_properties": 14, "max_depth": 5, "max_children": 14, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "79bf53c94989f51829e12061acca8c50" } }, { "acronym": "NCCO", "name": "Nursing Care Coordination Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 700, "download_url": "media/ontologies/NCCO/1/ncco.owl", "submission_id": 1, "domain": null, "description": "Nursing Care Coordination Ontology contains activities that nurses use while coordinating care among patients.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-11-05T00:00:00", "date_created": "2013-11-06T03:01:55", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 400, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 27, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MHC", "name": "Major Histocompatibility Complex Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 724, "download_url": "media/ontologies/MHC/4/mhc.owl", "submission_id": 4, "domain": null, "description": "The MaHCO contains terms necessary for describing and categorizing concepts related to MHC, in general, and for a number of model species, and also for humans. ", "documentation": "http://purl.org/stemnet/", "publication": "http://purl.org/stemnet/", "publications": null, "products": null, "taxon": null, "date_released": "2009-04-15T07:00:00", "date_created": "2009-04-15T18:19:00", "home_page": "http://purl.org/stemnet/", "version": "1.0.1", "has_ontology_language": "OWL", "nb_classes": 7929, "nb_individuals": 0, "nb_properties": 11, "max_depth": 12, "max_children": 183, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "HASCO", "name": "Human-Aware Science Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 3301, "download_url": "media/ontologies/HASCO/3/hasco.owl", "submission_id": 3, "domain": null, "description": "The Human-Aware Science Ontology (HAScO) integrates a collection of well-established science-related ontologies, and aims to address issues related to data annotation for large data ecosystem, where data can come from diverse data sources including sensors, lab results, and questionnaires. The HAScO has been used to annotate data collections to facilitate data exploration and analysis for numerous scientific projects. Data files produced by scientific studies are processed to identify and annotate the objects (a gene, for instance) with the appropriate ontological terms. ", "documentation": "https://github.com/paulopinheiro1234/hadatac/wiki/4.2.-The-Human-Aware-Science-Ontology-(HAScO)", "publication": "http://ceur-ws.org/Vol-2228/paper4.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2020-01-31T02:06:39", "date_created": "2020-01-31T02:06:54", "home_page": "http://www.hadatac.org/hasco-ontology/", "version": "0.9", "has_ontology_language": "OWL", "nb_classes": 1794, "nb_individuals": 38, "nb_properties": 348, "max_depth": 14, "max_children": 118, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PGHD-BP", "name": "PGHD Auxillary - BP", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6602, "download_url": "media/ontologies/PGHD-BP/2/pghd-bp.skos", "submission_id": 2, "domain": null, "description": "Ontology containing terms describing the ancillary information surrounding the collection of Blood Pressure data and the communication via Interactive Voice Response in the context of the VODAN-Africa project.", "documentation": "https://github.com/RenVit318/pghd", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-05-10T00:00:00", "date_created": "2024-05-10T11:18:41", "home_page": "https://github.com/RenVit318/pghd", "version": "1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 15, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PGHD_CONNECT", "name": "PGHD_CONNECT", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6598, "download_url": "media/ontologies/PGHD_CONNECT/1/pghd_connect.skos", "submission_id": 1, "domain": null, "description": "Overarching ontology containg terms to describe the various types of Patient Generated Health Data that are generated on a specific patients. Meant for implementation in the VODAN-Africa project.", "documentation": "https://github.com/RenVit318/pghd", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-05-10T00:00:00", "date_created": "2024-05-10T11:27:39", "home_page": "https://github.com/RenVit318/pghd", "version": "1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 10, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHENX", "name": "PhenX Phenotypic Terms", "status": "Classified", "topics": null, "species": null, "submission": { "id": 751, "download_url": "media/ontologies/PHENX/16/phenx.owl", "submission_id": 16, "domain": null, "description": "Standard measures related to complex diseases, phenotypic traits and environmental exposures", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-03-29T00:00:00", "date_created": "2016-10-13T18:11:33", "home_page": null, "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 533, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 27, "avg_children": 10, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TM-CONST", "name": "Traditional Medicine Constitution Value Set", "status": "Classified", "topics": null, "species": null, "submission": { "id": 192, "download_url": "media/ontologies/TM-CONST/1/tm-const.owl", "submission_id": 1, "domain": null, "description": "The value set for the Constitution property of the International Classification of Traditional Medicine (ICTM).", "documentation": "https://sites.google.com/site/whoictm/home", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2011-01-31T08:00:00", "date_created": "2011-02-01T02:24:46", "home_page": "https://sites.google.com/site/whoictm/home", "version": "1", "has_ontology_language": "OWL", "nb_classes": 20, "nb_individuals": 0, "nb_properties": 0, "max_depth": 0, "max_children": 20, "avg_children": 20, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NMOBR", "name": "NeuroMorpho.Org brain region ontologies", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 879, "download_url": "media/ontologies/NMOBR/32/nmobr.owl", "submission_id": 32, "domain": null, "description": "The species, brain regions and cell types are integrated into a single ontology for enabling OntoSearch functionality to mine the latest v7.0 release of NeuroMorpho.Org.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-11-28T02:12:08", "date_created": "2017-11-28T02:12:08", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 3250, "nb_individuals": 1968, "nb_properties": 2, "max_depth": 40, "max_children": 408, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TML", "name": "trasformative machine learning metadata", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3784, "download_url": "media/ontologies/TML/1/tml.owl", "submission_id": 1, "domain": null, "description": "a set of metadata to record transformative machine learning experiments with LINCS dataset", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-07-21T00:00:00", "date_created": "2020-07-21T08:57:12", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 3, "nb_properties": 0, "max_depth": 2, "max_children": 11, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TP4", "name": "Oualid", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5926, "download_url": "media/ontologies/TP4/1/tp4.owl", "submission_id": 1, "domain": null, "description": "relation familiales ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-07-02T00:00:00", "date_created": "2023-07-02T11:38:02", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 14, "nb_properties": 14, "max_depth": 3, "max_children": 4, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ICECI", "name": "International Classification of External Causes of Injuries", "status": "Classified", "topics": null, "species": null, "submission": { "id": 439, "download_url": "media/ontologies/ICECI/6/iceci.owl", "submission_id": 6, "domain": null, "description": "The International Classification of External Causes of Injury (ICECI) is a system of classifications to enable systematic description of how injuries occur. It is designed especially to assist injury prevention. \r\n\r\nThe ICECI was originally designed for use in settings in which information is recorded in a way that allows statistical reporting--for example, injury surveillance based on collection of information about cases attending a sample of hospital emergency departments. It has also been found useful for other purposes. For example, it has been used as a reference classification during revision of another classification, to record risk-factor exposure of children in a cohort study, as the basis for special-purpose classifications and in a growing number of other ways.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2004-07-01T07:00:00", "date_created": "2010-05-07T18:57:55", "home_page": null, "version": "Original Source: 1.2; OWL version 1.02", "has_ontology_language": "OWL", "nb_classes": 2232, "nb_individuals": 2229, "nb_properties": 7, "max_depth": 4, "max_children": 34, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEICBEER", "name": "The NeIC PaRI beer vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4621, "download_url": "media/ontologies/NEICBEER/1/neicbeer.skos", "submission_id": 1, "domain": null, "description": "This vocabulary is used to create a machine actionable dataset of beer and beer consumption", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-14T00:00:00", "date_created": "2021-06-14T15:45:51", "home_page": null, "version": "0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 41, "nb_properties": 1, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEIO", "name": "Neural Electronic Interface Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6722, "download_url": "media/ontologies/NEIO/3/neio.owl", "submission_id": 3, "domain": null, "description": "The Neural Electronic Interface Ontology represents the types of devices used to interface with the central nervous system to enhance (or augment) stimuli from a subject's external environment, the conditions under which these devices should be employed, the assessment of a subject's sensory ability, and the metrics for evaluating the performance.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-06-28T18:12:46", "date_created": "2024-06-28T18:12:48", "home_page": "https://github.com/uflcod/neural-electronic-interface-ontology/", "version": "2024-06-25", "has_ontology_language": "OWL", "nb_classes": 174, "nb_individuals": 79, "nb_properties": 22, "max_depth": 10, "max_children": 54, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NEUDIGS", "name": "Neuroscience Domain Insight Graph", "status": "Classified", "topics": null, "species": null, "submission": { "id": 478, "download_url": "media/ontologies/NEUDIGS/1/neudigs.owl", "submission_id": 1, "domain": null, "description": "Neuroscience Domain Insight Graphs provide a framework for expressing linked open data about ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-23T00:00:00", "date_created": "2017-02-24T05:10:01", "home_page": "http://dig.isi.edu", "version": "0.0.1", "has_ontology_language": "OWL", "nb_classes": 23, "nb_individuals": 8, "nb_properties": 22, "max_depth": 1, "max_children": 10, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OARCS", "name": "Ontology of Arthropod Circulatory Systems", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2471, "download_url": "media/ontologies/OARCS/3/oarcs.owl", "submission_id": 3, "domain": "anatomy", "description": "OArCS is an ontology describing the Arthropod ciruclatory system.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "oarcs.owl", "ontology_purl": "http://purl.obolibrary.org/obo/oarcs.owl" } ], "taxon": null, "date_released": "2019-04-22T19:11:35.093104", "date_created": "2019-04-22T19:11:35.093141", "home_page": "https://github.com/aszool/oarcs", "version": null, "has_ontology_language": "OWL", "nb_classes": 308, "nb_individuals": 323, "nb_properties": 6, "max_depth": 9, "max_children": 59, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "1abcf477d3b644fbeba0d5f89387ad06" } }, { "acronym": "OBA", "name": "Ontology of Biological Attributes", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7701, "download_url": "media/ontologies/OBA/28/oba.owl", "submission_id": 28, "domain": "phenotype", "description": "A collection of biological attributes (traits) covering all kingdoms of life.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1007/s00335-023-09992-1", "title": "The Ontology of Biological Attributes (OBA) - computational traits for the life sciences" } ], "products": [ { "id": "oba.owl", "ontology_purl": "http://purl.obolibrary.org/obo/oba.owl" }, { "id": "oba.obo", "ontology_purl": "http://purl.obolibrary.org/obo/oba.obo" }, { "id": "oba/subsets/oba-basic.obo", "ontology_purl": "http://purl.obolibrary.org/obo/oba/subsets/oba-basic.obo" } ], "taxon": null, "date_released": "2025-11-03T13:34:49.605872", "date_created": "2025-11-03T13:34:49.605879", "home_page": "https://github.com/obophenotype/bio-attribute-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 82874, "nb_individuals": 235, "nb_properties": 386, "max_depth": 40, "max_children": 7000, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "590087594e081f66e669cd22ed50667e" } }, { "acronym": "OCO", "name": "OpenCareOntology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6795, "download_url": "media/ontologies/OCO/2/oco.owl", "submission_id": 2, "domain": null, "description": "Open healthCare Ontology (OpenCare) is an integrated metadata vocabulary expressed as an ontological data model, to facilitate the effective reasoning of patient-specific electronic health record (EHR) data. The OpenCare model identifies the concepts and semantic types in the EHR data with the aim of enabling the representation of clinical data in a way that is accessible and usable by researchers and healthcare facility users. The development of OpenCare and its components is formalized using the Ontology Web Language (OWL). This framework aims to enhance the accessibility and user-friendliness of EHR clinical data.", "documentation": "https://w3id.org/opencare", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-05-05T00:00:00", "date_created": "2024-08-05T10:14:36", "home_page": "https://w3id.org/opencare", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 196, "nb_individuals": 194, "nb_properties": 116, "max_depth": 6, "max_children": 22, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OLIVES", "name": "Ontology for Influenza Vaccine Effectiveness Studies", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1940, "download_url": "media/ontologies/OLIVES/1/olives.owl", "submission_id": 1, "domain": null, "description": "The Ontology for Vaccine Effectiveness Studies (OLIVES) ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-10-16T00:00:00", "date_created": "2018-10-15T16:23:22", "home_page": null, "version": "Inital work-in-progress", "has_ontology_language": "OWL", "nb_classes": 62, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OMDO", "name": "OligoMetastatic Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7173, "download_url": "media/ontologies/OMDO/3/omdo.owl", "submission_id": 3, "domain": null, "description": "The OligoMetastatic Disease Ontology(OMDO) is a disease-specific ontology that characterizes the knowledge field of oligometastatic disease/oligometastatic cancer.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-07-18T00:00:00", "date_created": "2025-02-10T14:21:20", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 15314, "nb_individuals": 2, "nb_properties": 30, "max_depth": 14, "max_children": 123, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OMIABIS", "name": "Ontologized MIABIS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1044, "download_url": "media/ontologies/OMIABIS/2/omiabis.owl", "submission_id": 2, "domain": "health", "description": "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "omiabis.owl", "ontology_purl": "http://purl.obolibrary.org/obo/omiabis.owl" } ], "taxon": null, "date_released": "2017-12-13T10:41:44.978918", "date_created": "2017-12-13T10:41:44.978933", "home_page": "https://github.com/OMIABIS/omiabis-dev", "version": null, "has_ontology_language": "OWL", "nb_classes": 427, "nb_individuals": 15, "nb_properties": 75, "max_depth": 16, "max_children": 21, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "6458e451e13d1280168f4a0ce627d262" } }, { "acronym": "OMIM", "name": "Online Mendelian Inheritance in Man", "status": "Classified", "topics": null, "species": null, "submission": { "id": 539, "download_url": "media/ontologies/OMIM/11/omim.umls", "submission_id": 11, "domain": null, "description": "Online Mendelian Inheritance in Man, OMIM (TM). McKusick-Nathans Institute for Genetic Medicine, Johns Hopkins University (Baltimore, MD) and National Center for Biotechnology Information, National Library of Medicine", "documentation": "http://www.ncbi.nlm.nih.gov/omim/", "publication": "http://www.ncbi.nlm.nih.gov/omim/", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:17", "date_created": "2017-02-06T21:26:18", "home_page": "http://www.ncbi.nlm.nih.gov/omim/", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 93042, "nb_individuals": 0, "nb_properties": 15, "max_depth": 2, "max_children": 6075, "avg_children": 380, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OMO", "name": "OBO Metadata Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8052, "download_url": "media/ontologies/OMO/13/omo.owl", "submission_id": 13, "domain": "information", "description": "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "omo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/omo.owl" } ], "taxon": null, "date_released": "2026-03-23T14:21:16.229139", "date_created": "2026-03-23T14:21:16.229142", "home_page": "https://github.com/information-artifact-ontology/ontology-metadata", "version": null, "has_ontology_language": "OWL", "nb_classes": 27, "nb_individuals": 20, "nb_properties": 0, "max_depth": 8, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d076eff12fe6d59aa5f04f468fc59970" } }, { "acronym": "OMP", "name": "Ontology of Microbial Phenotypes", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6501, "download_url": "media/ontologies/OMP/59/omp.owl", "submission_id": 59, "domain": "phenotype", "description": "An ontology of phenotypes covering microbes", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1186/s12866-014-0294-3", "title": "An ontology for microbial phenotypes" } ], "products": [ { "id": "omp.owl", "ontology_purl": "http://purl.obolibrary.org/obo/omp.owl" }, { "id": "omp.obo", "ontology_purl": "http://purl.obolibrary.org/obo/omp.obo" } ], "taxon": null, "date_released": "2024-04-01T13:42:10.814054", "date_created": "2024-04-01T13:42:10.814058", "home_page": "http://microbialphenotypes.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 2309, "nb_individuals": 0, "nb_properties": 61, "max_depth": 10, "max_children": 59, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "173a55e0a7611bb17df561eacb3abe53" } }, { "acronym": "OMRSE", "name": "Ontology for Modeling and Representation of Social Entities", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8106, "download_url": "media/ontologies/OMRSE/66/omrse.owl", "submission_id": 66, "domain": "health", "description": "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/27406187", "title": "The ontology of medically related social entities: recent developments" } ], "products": [ { "id": "omrse.owl", "ontology_purl": "http://purl.obolibrary.org/obo/omrse.owl" } ], "taxon": { "id": "NCBITaxon:9606", "label": "Homo sapiens" }, "date_released": "2026-04-13T12:55:04.425713", "date_created": "2026-04-13T12:55:04.425716", "home_page": "https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview", "version": null, "has_ontology_language": "OWL", "nb_classes": 475, "nb_individuals": 479, "nb_properties": 164, "max_depth": 13, "max_children": 69, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "a95a34fdca078383d956dce9112de006" } }, { "acronym": "OMV", "name": "Ontology Metadata Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 10, "download_url": "media/ontologies/OMV/1/omv.owl", "submission_id": 1, "domain": null, "description": "A standard for ontology metadata; a vocabulary of terms and definitions describing ontologies which specifies reusability-enhancing ontology features for human and machine processing purposes.", "documentation": "https://sourceforge.net/projects/omv2/files/OMV%20Documentation/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2009-12-24T00:00:00", "date_created": "2017-01-26T02:04:32", "home_page": "http://omv2.sourceforge.net/index.html", "version": "2.4.1", "has_ontology_language": "OWL", "nb_classes": 16, "nb_individuals": 50, "nb_properties": 62, "max_depth": 1, "max_children": 13, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PAV", "name": "PAV Provenance, Authoring and Versioning", "status": "Classified", "topics": null, "species": null, "submission": { "id": 701, "download_url": "media/ontologies/PAV/3/pav.owl", "submission_id": 3, "domain": null, "description": "PAV is a lightweight ontology for tracking Provenance, Authoring and Versioning. PAV specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources.\r\n\r\nThis ontology describes the defined PAV properties and their usage. Note that PAV does not define any explicit classes or domain/ranges, as every property is meant to be used directly on the described online resource.", "documentation": "http://pav-ontology.github.io/pav/", "publication": "https://github.com/pav-ontology/pav/wiki/Publications", "publications": null, "products": null, "taxon": null, "date_released": "2017-01-20T02:12:41", "date_created": "2017-01-20T02:12:41", "home_page": "https://github.com/pav-ontology/pav/", "version": "2.3.1", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 9, "nb_properties": 40, "max_depth": 0, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PCPCKB", "name": "PC Parts Compatibility Knowledge Base", "status": "Classified", "topics": [ "PC hardware compatibility" ], "species": [ "Ontology" ], "submission": { "id": 5793, "download_url": "media/ontologies/PCPCKB/2/pcpckb.owl", "submission_id": 2, "domain": null, "description": "Still", "documentation": "trust me", "publication": "https://github.com/Grbson00/OWLOntologyRepo/tree/main/TestOntology", "publications": null, "products": null, "taxon": null, "date_released": "2023-05-05T12:04:34.485394", "date_created": "2023-05-05T12:04:34.485363", "home_page": "https://github.com", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 23, "nb_individuals": 6, "nb_properties": 5, "max_depth": 3, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PESONT", "name": "Preposition_enabled Spatial Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4694, "download_url": "media/ontologies/PESONT/2/pesont.owl", "submission_id": 2, "domain": null, "description": "Preposition-enabled Spatial Ontology (PeSONT) is a model that describes health service with related concepts, sub-concepts, attributes, and relations among concepts. Inferences of new knowledge are possible using queries. PeSONT classifies linguistic place terms using (Bennett and Agarwal, 2007) and uses prepositions of English language for location identification. Its implementation is to further the application of the PeNLP parser on human related problems by classifying place-like terms in natural language and for extracting geolocations.\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-24T00:00:00", "date_created": "2021-11-12T22:10:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 160, "nb_individuals": 50, "nb_properties": 13, "max_depth": 4, "max_children": 17, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CDPEO", "name": "Chronic Disease Patient Education Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3202, "download_url": "media/ontologies/CDPEO/1/cdpeo.owl", "submission_id": 1, "domain": null, "description": "This ontology is used to recommend personalized education materials to chronic disease patients. The constructed ontology mainly consists of two levels. Level 1 includes 5 terms: demographic, disease, vital sign, lifestyle and medication, which describe the characteristics contained in the patient data, as well as the topics of education materials. Leve 2 contains the detailed elements for each Level 1 class. The patient profile class is used to generate the instance of patient data, using object properties to connect to the specific characteristic class. The patient data will be mapped to a vector space generated from the Level 2 classes. SWRL rules are added to implement the semantic logic of mapping from patient original data to the ontology vector space. The pulblication of the ontology is in preperation.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-12-18T00:00:00", "date_created": "2019-12-18T12:12:32", "home_page": null, "version": "1.0.0", "has_ontology_language": "OWL", "nb_classes": 40, "nb_individuals": 32, "nb_properties": 31, "max_depth": 3, "max_children": 6, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UMMS", "name": "FirstOntologyForUMMS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5098, "download_url": "media/ontologies/UMMS/3/umms.owl", "submission_id": 3, "domain": null, "description": "This is an in-progress ontology for the numerous use cases of UMMS Enterprise Data & Analytics dept", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-05-22T00:00:00", "date_created": "2022-05-22T23:07:52", "home_page": null, "version": "0.3", "has_ontology_language": "OWL", "nb_classes": 28, "nb_individuals": 0, "nb_properties": 8, "max_depth": 4, "max_children": 8, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UNIPROT", "name": "Uniprot Core Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7926, "download_url": "media/ontologies/UNIPROT/1/uniprot.owl", "submission_id": 1, "domain": null, "description": "Properties and classes used for protein annotation", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2012-10-02T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "v2012-10-03", "has_ontology_language": "OWL", "nb_classes": 164, "nb_individuals": 60, "nb_properties": 64, "max_depth": 4, "max_children": 29, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UNITSONT", "name": "Units Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 524, "download_url": "media/ontologies/UNITSONT/1/unitsont.owl", "submission_id": 1, "domain": null, "description": "A small ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application.", "documentation": "https://mimi.case.edu/concepts", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2010-12-01T08:00:00", "date_created": "2011-07-27T18:22:24", "home_page": "https://mimi.case.edu/concepts", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 64, "nb_individuals": 1, "nb_properties": 0, "max_depth": 7, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VALUESETS", "name": "valuesets", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7990, "download_url": "media/ontologies/VALUESETS/4/valuesets.owl", "submission_id": 4, "domain": null, "description": null, "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-23T06:37:55", "date_created": "2026-02-22T00:00:00", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 8308, "nb_individuals": 0, "nb_properties": 0, "max_depth": 10, "max_children": 291, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CHEMBIO", "name": "Systems Chemical Biology and Chemogenomics Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 669, "download_url": "media/ontologies/CHEMBIO/9/chembio.owl", "submission_id": 9, "domain": null, "description": "Ontology for Systems Chemical Biology and Chemogenomics", "documentation": "http://chem2bio2owl.wikispaces.com", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-01-22T18:10:58", "date_created": "2015-01-22T18:10:59", "home_page": "http://chem2bio2rdf.org/owl", "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 104, "nb_individuals": 0, "nb_properties": 112, "max_depth": 8, "max_children": 22, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PMO-IMICAMS", "name": "PMO: Precision Medicine Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4143, "download_url": "media/ontologies/PMO-IMICAMS/1/pmo-imicams.owl", "submission_id": 1, "domain": null, "description": "The Precision Medicine Ontology (PMO) has been developed as a standardized ontology for human precision medicine with consistent, reusable and sustainable descriptions of human disease terms, genomic molecular, phenotype characteristics and related medical vocabulary disease concepts through collaborative efforts of researchers at Institute of Medical Information, Chinese Academy of Medical Sciences. The Precision Medicine Ontology focuses on the development of a high level patients-centric ontology for the academic research, thus, it systematically integrates biomedicine vocabularies from GO, NCBI Gene, DrugBank, HPO, MeSH, SNOMED CT, etc. This work is supported by the National Key Research and Development Program of China (Precision Medicine Knowledge Base, Grant No. 2016YFC0901901).", "documentation": null, "publication": "https://www.aimspress.com/article/10.3934/mbe.2020227/fulltext.html", "publications": null, "products": null, "taxon": null, "date_released": "2020-12-15T00:00:00", "date_created": "2020-12-16T07:41:21", "home_page": "http://www.phoc.org.cn/pmo/", "version": "4.0", "has_ontology_language": "OWL", "nb_classes": 76155, "nb_individuals": 0, "nb_properties": 95, "max_depth": 14, "max_children": 469, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "SCO", "name": "Study Cohort Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 3747, "download_url": "media/ontologies/SCO/5/sco.owl", "submission_id": 5, "domain": null, "description": "The Study Cohort Ontology (SCO) is developed to model overall structure and patterns of cohort variables and control/intervention groups defined within the structured population descriptions (commonly referred to as Table1's or Cohort Summary Tables)of observational case studies and clinical trials. We maintain only domain agnostic and commonly occuring subject variables and interventions in SCO, and we have a suite of ontologies (Diseases, Medications, LabResults etc) to encode Diabetes related terminology. We have adopted a bottom-up approach to modeling and we have revised the structure of SCO upon investigation of a few research studies (11 to be precise) from the Pharmacological Interventions (Chapter 8) and Cardiovascular Complications (Chapter 9) of the American Diabetes Association (ADA)’s Standards of Medical Care 2018 CPG. We enable deep drive visualizations driven off queries to knowledge graphs modeled on SCO, to help assist physician visualize the similarity of a patient to a study group, at a quick glance. We welcome contributions and suggestions to extend SCO to represent cohort descriptions of publications targeted to other diseases, and we plan to release set of tools to make this process seamless.", "documentation": "https://tetherless-world.github.io/study-cohort-ontology/ontology-resource", "publication": "https://link.springer.com/chapter/10.1007/978-3-030-30796-7_4", "publications": null, "products": null, "taxon": null, "date_released": "2019-04-18T00:00:00", "date_created": "2020-07-02T20:24:40", "home_page": "https://tetherless-world.github.io/study-cohort-ontology/", "version": "1.1.0", "has_ontology_language": "OWL", "nb_classes": 3542, "nb_individuals": 128, "nb_properties": 560, "max_depth": 14, "max_children": 118, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PMO-SPEED", "name": "PMO Playing Speed Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1677, "download_url": "media/ontologies/PMO-SPEED/2/pmo-speed.skos", "submission_id": 2, "domain": null, "description": "Vocabulary for playing speeds of audio carriers, e.g., audio discs, audio cassettes, piano/organ rolls, primarily for use with the Performed Music Ontology, or other similar music ontologies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-07-13T01:10:52", "date_created": "2018-07-13T01:10:53", "home_page": "https://github.com/LD4P/PerformedMusicOntology/tree/master/Vocabularies", "version": "1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 14, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANA_UG", "name": "VODANA_UG", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4609, "download_url": "media/ontologies/VODANA_UG/1/vodana_ug.owl", "submission_id": 1, "domain": null, "description": "This is an ontology comprising of terms and controlled vocabulary about the data collected using the Out Patient Register 002 and other registars in different facilities in Uganda.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-24T00:00:00", "date_created": "2021-06-24T21:35:59", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 36, "nb_properties": 17, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "TYPON", "name": "Microbial Typing Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 223, "download_url": "media/ontologies/TYPON/11/typon.owl", "submission_id": 11, "domain": null, "description": "TyPon provides a comprehensive description of the existing microbial typing methods for the identification of bacterial Isolates and their classification. Such a description constitutes an universal format for the exchange of information on the microbial typing field, providing a vehicle for the integration of the numerous disparate online databases. In its current version, TyPon describes most used microbial typing methods but it is, and always will be, a work in progress given the constant advances in the microbial typing field.", "documentation": "https://bitbucket.org/phyloviz/typon/wiki", "publication": "https://bitbucket.org/phyloviz/typon/wiki", "publications": null, "products": null, "taxon": null, "date_released": "2014-09-29T21:45:25", "date_created": "2014-09-29T21:45:27", "home_page": "http://www.phyloviz.net/typon/", "version": "20140929", "has_ontology_language": "OWL", "nb_classes": 44, "nb_individuals": 0, "nb_properties": 46, "max_depth": 10, "max_children": 7, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UBERON", "name": "Uberon multi-species anatomy ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8091, "download_url": "media/ontologies/UBERON/311/uberon.owl", "submission_id": 311, "domain": "anatomy and development", "description": "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22293552", "title": "Uberon, an integrative multi-species anatomy ontology" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/25009735", "title": "Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon" } ], "products": [ { "id": "uberon.owl", "type": "owl:Ontology", "title": "Uberon", "description": "core ontology", "is_canonical": true, "ontology_purl": "http://purl.obolibrary.org/obo/uberon.owl" }, { "id": "uberon/uberon-base.owl", "page": "https://github.com/INCATools/ontology-development-kit/issues/50", "title": "Uberon base ontology", "description": "Axioms defined within Uberon and to be used in imports for other ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/uberon/uberon-base.owl" }, { "id": "uberon/uberon-basic.obo", "type": "obo-basic-ontology", "title": "Uberon basic", "format": "obo", "description": "Uberon edition that excludes external ontologies and most relations", "ontology_purl": "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo" }, { "id": "uberon/collected-metazoan.owl", "page": "https://obophenotype.github.io/uberon/combined_multispecies/", "type": "MergedOntology", "taxon": "Metazoa", "title": "Uberon collected metazoan ontology", "description": "Uberon plus all metazoan ontologies", "ontology_purl": "http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl" }, { "id": "uberon/composite-metazoan.owl", "page": "https://obophenotype.github.io/uberon/combined_multispecies/", "type": "MergedOntology", "taxon": "Metazoa", "title": "Uberon composite metazoan ontology", "description": "Uberon and all metazoan ontologies with redundant species-specific terms removed", "ontology_purl": "http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl" }, { "id": "uberon/composite-vertebrate.owl", "page": "https://obophenotype.github.io/uberon/combined_multispecies/", "type": "MergedOntology", "taxon": "Vertebrata", "title": "Uberon composite vertebrate ontology", "mireots_from": [ "zfa", "xao", "fbbt", "wbbt", "ma", "fma", "emapa", "ehdaa2" ], "ontology_purl": "http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl" } ], "taxon": { "id": "NCBITaxon:33208", "label": "Metazoa" }, "date_released": "2026-04-06T13:30:56.164975", "date_created": "2026-04-06T13:30:56.164978", "home_page": "http://uberon.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 27295, "nb_individuals": 67, "nb_properties": 296, "max_depth": 35, "max_children": 1440, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "a5d34c469310d472c8428172d6315005" } }, { "acronym": "CHEMINF", "name": "Chemical Information Ontology", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 7196, "download_url": "media/ontologies/CHEMINF/50/cheminf.owl", "submission_id": 50, "domain": "chemistry and biochemistry", "description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/21991315", "title": "The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web" } ], "products": [ { "id": "cheminf.owl", "ontology_purl": "http://purl.obolibrary.org/obo/cheminf.owl" } ], "taxon": null, "date_released": "2025-02-24T12:23:41.572214", "date_created": "2025-02-24T12:23:41.572219", "home_page": "https://github.com/semanticchemistry/semanticchemistry", "version": null, "has_ontology_language": "OWL", "nb_classes": 855, "nb_individuals": 20, "nb_properties": 111, "max_depth": 12, "max_children": 39, "avg_children": 11, "classifiable": true, "nb_inconsistent": 15, "indexed": true, "md5sum": "e2a8909ffd3d0d37f327b2b9ca114672" } }, { "acronym": "UCVA", "name": "Unwarranted Clinical Variation Analysis With Local Healthcare Contextual Factors", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7925, "download_url": "media/ontologies/UCVA/4/ucva.owl", "submission_id": 4, "domain": null, "description": "The Unwarranted Clinical Variation Analysis ontology (UCVA) is an application ontology that standardizes the representation of local context factors of UCV analysis. It includes numerous instances designed to support the extraction of these factors as covariates in UCV analysis, making it practical and easy to use", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-01-21T00:00:00", "date_created": "2026-01-21T00:00:00", "home_page": null, "version": "1.2", "has_ontology_language": "OWL", "nb_classes": 95, "nb_individuals": 134, "nb_properties": 28, "max_depth": 4, "max_children": 22, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UGANDA_DISEASES", "name": "Uganda_diseases", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4728, "download_url": "media/ontologies/UGANDA_DISEASES/17/uganda_diseases.skos", "submission_id": 17, "domain": null, "description": "This is the seventh version of the Uganda diseases", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-03-29T00:00:00", "date_created": "2021-11-23T22:54:43", "home_page": null, "version": "7", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 308, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UGANDAFACILITIES", "name": "UGANDAFACILITIES", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4427, "download_url": "media/ontologies/UGANDAFACILITIES/2/ugandafacilities.skos", "submission_id": 2, "domain": null, "description": "This is the list of health facilities registered under VODANA Project.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-22T00:00:00", "date_created": "2021-04-23T05:44:21", "home_page": null, "version": "1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 20, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UHC-METADATA", "name": "UHC Metadata", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6108, "download_url": "media/ontologies/UHC-METADATA/1/uhc-metadata.owl", "submission_id": 1, "domain": null, "description": "Draft of onotlogy for UHC meta hub", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-10-03T00:00:00", "date_created": "2023-10-03T20:58:49", "home_page": null, "version": "v0.0.1", "has_ontology_language": "OWL", "nb_classes": 103, "nb_individuals": 2, "nb_properties": 25, "max_depth": 4, "max_children": 16, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UK", "name": "uk geography", "status": "Classified", "topics": null, "species": null, "submission": { "id": 357, "download_url": "media/ontologies/UK/1/uk.owl", "submission_id": 1, "domain": null, "description": "it is just for show some details about the UK", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-24T00:00:00", "date_created": "2016-01-24T14:28:32", "home_page": null, "version": "1", "has_ontology_language": "OWL", "nb_classes": 2, "nb_individuals": 2, "nb_properties": 1, "max_depth": 1, "max_children": 1, "avg_children": 1, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CHEMESSENCE", "name": "ChemEssence", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7081, "download_url": "media/ontologies/CHEMESSENCE/3/chemessence.owl", "submission_id": 3, "domain": null, "description": "An EXPERIMENTAL subset/rewiring of CHEBI to reduce it to the essential terms, in particular collapsing protonation cliques", "documentation": "https://github.com/cmungall/chemessence", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-12-22T02:01:24", "date_created": "2024-12-22T02:02:28", "home_page": "https://github.com/cmungall/chemessence", "version": "2024-12-21", "has_ontology_language": "OWL", "nb_classes": 201556, "nb_individuals": 0, "nb_properties": 5, "max_depth": 18, "max_children": 10769, "avg_children": 23, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CHEMROF", "name": "CHEMROF", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6512, "download_url": "media/ontologies/CHEMROF/4/chemrof.owl", "submission_id": 4, "domain": null, "description": "CHEMROF is an ontological framework for Chemical Entities Mixtures Reactions Ontological Framework.\r\n\r\nThis OWL ontology is an automated Translation of the source LinkML schema, https://w3id.org/chemrof", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-03-30T18:02:12", "date_created": "2024-03-30T18:02:13", "home_page": "https://w3id.org/chemrof", "version": null, "has_ontology_language": "OWL", "nb_classes": 237, "nb_individuals": 0, "nb_properties": 78, "max_depth": 9, "max_children": 94, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CHR", "name": "Monochrom", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7674, "download_url": "media/ontologies/CHR/4/chr.owl", "submission_id": 4, "domain": null, "description": "Ontological representation of chromosomes in major species, Automatic translation of UCSC chromosome bands to OWL classes", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2025-10-21T01:01:24", "date_created": "2025-10-20T00:00:00", "home_page": "https://github.com/monarch-initiative/monochrom/", "version": "2025-10-15", "has_ontology_language": "OWL", "nb_classes": 2287, "nb_individuals": 324, "nb_properties": 142, "max_depth": 34, "max_children": 1836, "avg_children": 14, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHFUMIADO", "name": "Phallusia fumigata Anatomy and Development Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 158, "download_url": "media/ontologies/PHFUMIADO/2/phfumiado.obo", "submission_id": 2, "domain": null, "description": "The first ontology describing the anatomy and the development of Phallusia fumigata. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-08-07T00:00:00", "date_created": "2016-08-04T22:12:53", "home_page": "http://www.aniseed.cnrs.fr/", "version": null, "has_ontology_language": "OBO", "nb_classes": 880, "nb_individuals": 0, "nb_properties": 7, "max_depth": 2, "max_children": 371, "avg_children": 88, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "CHEBI", "name": "Chemical Entities of Biological Interest", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8079, "download_url": "media/ontologies/CHEBI/214/chebi.owl", "submission_id": 214, "domain": "chemistry and biochemistry", "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1093/nar/gkaf1271", "title": "ChEBI: re-engineered for a sustainable future" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/26467479", "title": "ChEBI in 2016: Improved services and an expanding collection of metabolites." } ], "products": [ { "id": "chebi.owl", "ontology_purl": "http://purl.obolibrary.org/obo/chebi.owl" }, { "id": "chebi.obo", "ontology_purl": "http://purl.obolibrary.org/obo/chebi.obo" }, { "id": "chebi.json", "ontology_purl": "http://purl.obolibrary.org/obo/chebi.json" }, { "id": "chebi.owl.gz", "title": "chebi, compressed owl", "ontology_purl": "http://purl.obolibrary.org/obo/chebi.owl.gz" }, { "id": "chebi/chebi_lite.obo", "title": "chebi_lite, no syns or xrefs", "ontology_purl": "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo" }, { "id": "chebi/chebi_core.obo", "title": "chebi_core, no xrefs", "ontology_purl": "http://purl.obolibrary.org/obo/chebi/chebi_core.obo" } ], "taxon": null, "date_released": "2026-04-06T12:02:19.773066", "date_created": "2026-04-06T12:02:19.773068", "home_page": "http://www.ebi.ac.uk/chebi", "version": null, "has_ontology_language": "OWL", "nb_classes": 224560, "nb_individuals": 0, "nb_properties": 9, "max_depth": 18, "max_children": 19397, "avg_children": 22, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c299ad49e32be96dd84983308d5b33ee" } }, { "acronym": "usecase", "name": "usecase", "status": "Classified", "topics": [ "usecase" ], "species": [ "usecase" ], "submission": { "id": 3986, "download_url": "media/ontologies/usecase/2/usecase.owl", "submission_id": 2, "domain": null, "description": "", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-10-17T11:32:38.389282", "date_created": "2020-10-17T11:32:38.389268", "home_page": null, "version": "Version2", "has_ontology_language": "OWL", "nb_classes": 245, "nb_individuals": 583, "nb_properties": 81, "max_depth": 4, "max_children": 29, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHIPO", "name": "Pathogen Host Interaction Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8029, "download_url": "media/ontologies/PHIPO/43/phipo.owl", "submission_id": 43, "domain": "phenotype", "description": "PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/34788826", "title": "PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions" } ], "products": [ { "id": "phipo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/phipo.owl" }, { "id": "phipo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/phipo.obo" } ], "taxon": null, "date_released": "2026-03-16T13:23:16.293148", "date_created": "2026-03-16T13:23:16.293150", "home_page": "https://github.com/PHI-base/phipo", "version": null, "has_ontology_language": "OWL", "nb_classes": 10780, "nb_individuals": 323, "nb_properties": 317, "max_depth": 33, "max_children": 309, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d7e22eac958f388fdf218281d26b6ce4" } }, { "acronym": "PHYLO", "name": "Phylontology_v1.0", "status": "Classified", "topics": null, "species": null, "submission": { "id": 35, "download_url": "media/ontologies/PHYLO/4/phylo.owl", "submission_id": 4, "domain": null, "description": "This phylogenetic ontology represent phylogenetic analyses tasks.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-06-01T00:00:00", "date_created": "2016-06-06T17:44:08", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 115, "nb_individuals": 709, "nb_properties": 14, "max_depth": 5, "max_children": 13, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PHYLONT", "name": "Phylogenetic Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 705, "download_url": "media/ontologies/PHYLONT/7/phylont.owl", "submission_id": 7, "domain": null, "description": "Ontology for Phylogenetic Analysis", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-10-02T07:00:00", "date_created": "2013-03-11T20:07:49", "home_page": null, "version": "ver8", "has_ontology_language": "OWL", "nb_classes": 148, "nb_individuals": 2, "nb_properties": 38, "max_depth": 5, "max_children": 33, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PINO", "name": "Pregnancy Information Needs Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4899, "download_url": "media/ontologies/PINO/2/pino.owl", "submission_id": 2, "domain": null, "description": "An ontology about pregnancy information needs across all stages of pregnancy", "documentation": null, "publication": "To be published in JMIR Pediatrics and Parenting soon.", "publications": null, "products": null, "taxon": null, "date_released": "2022-02-09T00:00:00", "date_created": "2022-02-14T20:38:37", "home_page": "https://github.com/henryhezhe2003/Pregnancy_Infomation_Needs_Ontology", "version": "1.1", "has_ontology_language": "OWL", "nb_classes": 267, "nb_individuals": 5, "nb_properties": 0, "max_depth": 8, "max_children": 19, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VBO", "name": "Vertebrate Breed Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7723, "download_url": "media/ontologies/VBO/14/vbo.owl", "submission_id": 14, "domain": "organisms", "description": "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "vbo.owl", "name": "Vertebrate Breed Ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/vbo.owl" }, { "id": "vbo.obo", "name": "Vertebrate Breed Ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/vbo.obo" }, { "id": "vbo.json", "name": "Vertebrate Breed Ontology additional release in OBOJSon format", "ontology_purl": "http://purl.obolibrary.org/obo/vbo.json" }, { "id": "vbo/vbo-base.owl", "name": "Vertebrate Breed Ontology main release in OWL format", "ontology_purl": "http://purl.obolibrary.org/obo/vbo/vbo-base.owl" }, { "id": "vbo/vbo-base.obo", "name": "Vertebrate Breed Ontology additional release in OBO format", "ontology_purl": "http://purl.obolibrary.org/obo/vbo/vbo-base.obo" }, { "id": "vbo/vbo-base.json", "name": "Vertebrate Breed Ontology additional release in OBOJSon format", "ontology_purl": "http://purl.obolibrary.org/obo/vbo/vbo-base.json" } ], "taxon": null, "date_released": "2025-11-10T12:49:21.072717", "date_created": "2025-11-10T12:49:21.072723", "home_page": "https://github.com/monarch-initiative/vertebrate-breed-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 20239, "nb_individuals": 73, "nb_properties": 119, "max_depth": 37, "max_children": 1629, "avg_children": 7, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "b96c461eea8ff0b35806e87174c4b90e" } }, { "acronym": "VCSR", "name": "Victorian Australia, Covid surge response", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5492, "download_url": "media/ontologies/VCSR/6/vcsr.owl", "submission_id": 6, "domain": null, "description": "This is a tacit knowledge ontology. The ontology contains entities, individuals and properties in the domain of Victorian (Australia) Health's Covid surge workforce during the Covid outbreak 2020-2022. This ontology aims to be:\r\n\r\n1) An historical resource for future planning. \r\n2) A formal taxonomy of terms.\r\n3) Corporate memory.\r\n\r\nThe ontology represents many Public Health Officer's (PHO's) perspective of the domain.\r\nThe author and people who inputted terms to the ontology were PHOs during this period. The ontology is PHOs lived experience of a multitude of ever-changing moving parts during the pandemic. The ontology was constructed in Protégé 5.2.0 and is best downloaded and viewed on that platform.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-08-29T00:00:00", "date_created": "2022-11-09T22:10:51", "home_page": "www.ontohealth.com.au", "version": "Version 1.91", "has_ontology_language": "OWL", "nb_classes": 133, "nb_individuals": 96, "nb_properties": 62, "max_depth": 5, "max_children": 25, "avg_children": 20, "classifiable": true, "nb_inconsistent": 25, "indexed": true, "md5sum": null } }, { "acronym": "VDOT", "name": "Viral Disease Ontology Trunk", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4168, "download_url": "media/ontologies/VDOT/35/vdot.owl", "submission_id": 35, "domain": null, "description": "VDOT is a middle-layer ontology for the health care domain with special emphasis on viral infections and transplantation medicine.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-01-12T02:14:11", "date_created": "2021-01-12T02:14:15", "home_page": null, "version": "Initial Version\nrelease date 28/02/2017", "has_ontology_language": "OWL", "nb_classes": 519, "nb_individuals": 0, "nb_properties": 41, "max_depth": 16, "max_children": 14, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VIMM", "name": "In Vitro Methodologies Ontology for MAATrica metric", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6559, "download_url": "media/ontologies/VIMM/1/vimm.obo", "submission_id": 1, "domain": null, "description": "MAATrica is a novel metric for assessing the coherence of methodologies in research papers within the fields of medicinal and nutraceutical chemistry. MAATrica employs user-controlled and customizable ontologies (in silico, in vitro and in vivo), enabling personalized analysis of research papers in the fields of medicinal and nutraceutical chemistry. Here we present the in vitro ontology we developed for the scope.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-04-21T00:00:00", "date_created": "2024-04-21T15:30:56", "home_page": null, "version": null, "has_ontology_language": "OBO", "nb_classes": 260, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 141, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VIVAS", "name": "VIVAS Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7099, "download_url": "media/ontologies/VIVAS/1/vivas.owl", "submission_id": 1, "domain": null, "description": "An ontology built upon BFO that formulates the experiment setup and parameters for VIVAS air sampler", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2025-01-03T00:00:00", "date_created": "2025-01-03T19:20:48", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 51, "nb_individuals": 0, "nb_properties": 6, "max_depth": 7, "max_children": 5, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANADISEASES", "name": "VODANADiseases", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4919, "download_url": "media/ontologies/VODANADISEASES/3/vodanadiseases.skos", "submission_id": 3, "domain": null, "description": "Vodana disease terms based on WHO's ICD-11 standards intended for coding health information for FAIR implementation countries in Africa", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-10-04T00:00:00", "date_created": "2022-02-21T09:43:10", "home_page": null, "version": "2.0.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 516, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LPT", "name": "Livestock Product Trait Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 283, "download_url": "media/ontologies/LPT/3/lpt.obo", "submission_id": 3, "domain": null, "description": "The Livestock Product Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-12-01T00:00:00", "date_created": "2017-02-27T15:26:10", "home_page": null, "version": "1.4", "has_ontology_language": "OBO", "nb_classes": 476, "nb_individuals": 0, "nb_properties": 2, "max_depth": 7, "max_children": 30, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "M4M19-SUBS", "name": "M4M19 Subjects", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4760, "download_url": "media/ontologies/M4M19-SUBS/3/m4m19-subs.skos", "submission_id": 3, "domain": null, "description": "Controlled vocabularies allow an accurate and controlled approach in describing physical and digital assets (e.g., data). One of such controlled vocabulary is NICEST-2 Subjects. This controlled vocabulary is a result of Metadata 4 Machine (M4M) Workshop 19 (M4M.19 funded by EOSC-Nordic ) provided to the NICEST-2 project.\r\n\r\nsheet2rdf and OntoStack, developed by FAIR Data Collective, are used to build and serve NICEST-2 Subjects, while PURL will be used to persist identifiers for the vocabulary terms and properties:\r\n\r\nhttp://purl.org/m4m19/subjects/", "documentation": "https://github.com/fair-data-collective/M4M19-subjects-vocabulary", "publication": "https://github.com/fair-data-collective/M4M19-subjects-vocabulary", "publications": null, "products": null, "taxon": null, "date_released": "2021-11-20T00:00:00", "date_created": "2021-12-08T00:47:22", "home_page": "https://github.com/fair-data-collective/M4M19-subjects-vocabulary", "version": "0.1.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 23, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANA-GENERAL", "name": "VODANATERMS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4578, "download_url": "media/ontologies/VODANA-GENERAL/12/vodana-general.skos", "submission_id": 12, "domain": null, "description": "VODANA's General list of terms that are used within Outpatient Department Registration and Antenatal Care Templates.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-06-02T00:00:00", "date_created": "2021-09-20T05:06:31", "home_page": null, "version": "8", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 165, "nb_properties": 35, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANAKENYA", "name": "VODANA KENYA", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4614, "download_url": "media/ontologies/VODANAKENYA/4/vodanakenya.skos", "submission_id": 4, "domain": null, "description": "Ontology containing the controlled terms and semantic properties used in the Ontology for Out-patient Claim Form NHIS", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-07-22T00:00:00", "date_created": "2021-09-10T12:12:10", "home_page": null, "version": "0.1.1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 28, "nb_properties": 26, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANA-METRICS", "name": "SPECIFICMETRICS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4392, "download_url": "media/ontologies/VODANA-METRICS/5/vodana-metrics.skos", "submission_id": 5, "domain": null, "description": "These are specific metrics of VODANA project", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-04-01T00:00:00", "date_created": "2021-04-05T10:17:19", "home_page": null, "version": "5", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 44, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANAMFLCODE", "name": "VODANAFACILITIESLIST", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5444, "download_url": "media/ontologies/VODANAMFLCODE/4/vodanamflcode.skos", "submission_id": 4, "domain": null, "description": "This is the list of VODANA health facilities with VODANA MFL Code.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-08-08T00:00:00", "date_created": "2022-10-23T23:33:51", "home_page": null, "version": "4.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 97, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANA-MI", "name": "VODANA-MIGRANTS-INTERVIEWS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4816, "download_url": "media/ontologies/VODANA-MI/3/vodana-mi.skos", "submission_id": 3, "domain": null, "description": "Migrants Interviews Ontologies\r\n", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-01-05T00:00:00", "date_created": "2022-01-05T20:33:15", "home_page": null, "version": "2.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 70, "nb_properties": 5, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANAUGANDA", "name": "VODANAUGANDA", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4902, "download_url": "media/ontologies/VODANAUGANDA/2/vodanauganda.skos", "submission_id": 2, "domain": null, "description": "This is an ontology comprising of controlled vocabulary terms and properties about the data collected using the Out Patient Register 002 in different health facilities in Uganda.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-02-10T00:00:00", "date_created": "2022-02-10T18:49:17", "home_page": null, "version": "2.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 37, "nb_properties": 17, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LOINC", "name": "Logical Observation Identifier Names and Codes", "status": "Classified", "topics": null, "species": null, "submission": { "id": 302, "download_url": "media/ontologies/LOINC/12/loinc.umls", "submission_id": 12, "domain": null, "description": "Logical Observation Identifier Names and Codes (LOINC)", "documentation": "http://loinc.org/downloads", "publication": "http://loinc.org/downloads", "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:07", "date_created": "2017-02-06T21:26:07", "home_page": "http://loinc.org/downloads", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 192372, "nb_individuals": 0, "nb_properties": 152, "max_depth": 16, "max_children": 10786, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LONGCOVID", "name": "Long Covid Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4588, "download_url": "media/ontologies/LONGCOVID/2/longcovid.owl", "submission_id": 2, "domain": null, "description": "Long Covid phenotype ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-10-06T00:00:00", "date_created": "2021-10-05T16:48:57", "home_page": null, "version": "20211006", "has_ontology_language": "OWL", "nb_classes": 12, "nb_individuals": 0, "nb_properties": 0, "max_depth": 4, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 6, "indexed": true, "md5sum": null } }, { "acronym": "MADS-RDF", "name": "Metadata Authority Description Schema in RDF", "status": "Classified", "topics": null, "species": null, "submission": { "id": 370, "download_url": "media/ontologies/MADS-RDF/1/mads-rdf.owl", "submission_id": 1, "domain": null, "description": "MADS-RDF is a knowledge organization system (KOS) designed for use with controlled values for names (personal, corporate, geographic, etc.), thesauri, taxonomies, subject heading systems, and other controlled value lists. It is closely related to SKOS, the Simple Knowledge Organization System and a widely supported and adopted RDF vocabulary. MADS/RDF has been fully mapped to SKOS. It is presented as an OWL ontology.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-10-28T00:00:00", "date_created": "2017-10-15T22:47:20", "home_page": "http://www.loc.gov/standards/mads/rdf/", "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 67, "nb_individuals": 1, "nb_properties": 90, "max_depth": 3, "max_children": 17, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VANDF", "name": "Veterans Health Administration National Drug File", "status": "Classified", "topics": null, "species": null, "submission": { "id": 545, "download_url": "media/ontologies/VANDF/9/vandf.umls", "submission_id": 9, "domain": null, "description": "NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-02-06T21:26:41", "date_created": "2017-02-06T21:26:41", "home_page": "http://www.pbm.va.gov/NationalFormulary.aspx", "version": "2016AB", "has_ontology_language": "UMLS", "nb_classes": 26295, "nb_individuals": 0, "nb_properties": 20, "max_depth": 0, "max_children": 0, "avg_children": 0, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VARIO", "name": "Variation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4568, "download_url": "media/ontologies/VARIO/19/vario.owl", "submission_id": 19, "domain": null, "description": "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "vario.owl", "ontology_purl": "http://purl.obolibrary.org/obo/vario.owl" }, { "id": "vario.obo", "ontology_purl": "http://purl.obolibrary.org/obo/vario.obo" } ], "taxon": null, "date_released": "2021-10-25T16:19:46.457217", "date_created": "2021-10-25T16:19:46.457231", "home_page": "http://variationontology.org", "version": null, "has_ontology_language": "OWL", "nb_classes": 495, "nb_individuals": 0, "nb_properties": 22, "max_depth": 10, "max_children": 13, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "6e1e47aab4724afa4596d421b4ac7372" } }, { "acronym": "MAMO-SCR-ONTO", "name": "Mammography Screening Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5981, "download_url": "media/ontologies/MAMO-SCR-ONTO/1/mamo-scr-onto.owl", "submission_id": 1, "domain": null, "description": "The Mammography Screening Ontology (MAMO-SCR-Onto) is designed to provide mammography application recommendations for the early detection of breast cancer in patients at average risk of the disease.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-07-25T00:00:00", "date_created": "2023-07-25T23:39:32", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 11, "nb_individuals": 18, "nb_properties": 8, "max_depth": 2, "max_children": 6, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "MAMOVIEW", "name": "Math Ontolofy View", "status": "Classified", "topics": null, "species": null, "submission": { "id": 312, "download_url": "media/ontologies/MAMOVIEW/1/mamoview.owl", "submission_id": 1, "domain": null, "description": "View for MAMO : Mathematical Ontology", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-08-09T00:00:00", "date_created": "2017-08-09T08:23:25", "home_page": null, "version": "2015-10-17", "has_ontology_language": "OWL", "nb_classes": 100, "nb_individuals": 0, "nb_properties": 3, "max_depth": 5, "max_children": 12, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UO", "name": "Units of measurement ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7890, "download_url": "media/ontologies/UO/63/uo.owl", "submission_id": 63, "domain": "phenotype", "description": "Metrical units for use in conjunction with PATO", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/23060432", "title": "The Units Ontology: a tool for integrating units of measurement in science" } ], "products": [ { "id": "uo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/uo.owl" }, { "id": "uo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/uo.obo" }, { "id": "uo.json", "ontology_purl": "http://purl.obolibrary.org/obo/uo.json" } ], "taxon": null, "date_released": "2026-01-19T20:21:43.761798", "date_created": "2026-01-19T20:21:43.761801", "home_page": "https://github.com/bio-ontology-research-group/unit-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 574, "nb_individuals": 276, "nb_properties": 2, "max_depth": 6, "max_children": 38, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "a976c6a741daaf82c2dbff60f62d22ea" } }, { "acronym": "UPA", "name": "Unipathway", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6468, "download_url": "media/ontologies/UPA/2/upa.owl", "submission_id": 2, "domain": "biological systems", "description": "A manually curated resource for the representation and annotation of metabolic pathways", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/22102589", "title": "UniPathway: a resource for the exploration and annotation of metabolic pathways" } ], "products": [ { "id": "upa.owl", "ontology_purl": "http://purl.obolibrary.org/obo/upa.owl" }, { "id": "upa.obo", "ontology_purl": "http://purl.obolibrary.org/obo/upa.obo" } ], "taxon": null, "date_released": "2024-03-18T13:03:50.864466", "date_created": "2024-03-18T13:03:50.864470", "home_page": "https://github.com/geneontology/unipathway", "version": null, "has_ontology_language": "OWL", "nb_classes": 4673, "nb_individuals": 0, "nb_properties": 96, "max_depth": 9, "max_children": 2492, "avg_children": 17, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "9d00189a3b95dc7b241778c6f5f1150f" } }, { "acronym": "INTVMODE", "name": "Interview Mode", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5558, "download_url": "media/ontologies/INTVMODE/1/intvmode.skos", "submission_id": 1, "domain": null, "description": "This class refers to the different modes of Interview", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-07T00:00:00", "date_created": "2022-12-07T19:44:48", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 8, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LIFO", "name": "Life Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1299, "download_url": "media/ontologies/LIFO/1/lifo.owl", "submission_id": 1, "domain": null, "description": "The Life Ontology (LifO) is an ontology of the life of organism. LifO represents the life processes of organisms and related entities and relations. LifO is a general purpose ontology that covers the common features associated with different organisms such as unicellular prokaryotes (e.g., E. coli) and multicellular organisms (e.g., human).", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2018-03-11T00:00:00", "date_created": "2018-03-11T20:47:18", "home_page": "https://github.com/lifeontology/lifo", "version": "Vision Release: 1.0.17", "has_ontology_language": "OWL", "nb_classes": 215, "nb_individuals": 12, "nb_properties": 98, "max_depth": 9, "max_children": 16, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "LION", "name": "LipidOntology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3767, "download_url": "media/ontologies/LION/1/lion.obo", "submission_id": 1, "domain": null, "description": "Lipid ontology (LION) associates >50,000 lipid species to biophysical, chemical, and cell biological features. ", "documentation": null, "publication": "https://doi.org/10.1093/gigascience/giz061", "publications": null, "products": null, "taxon": null, "date_released": "2019-11-09T00:00:00", "date_created": "2020-07-08T11:58:30", "home_page": "www.lipidontology.com", "version": "1.1", "has_ontology_language": "OBO", "nb_classes": 63567, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 2501, "avg_children": 30, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "UPHENO", "name": "Unified Phenotype Ontology (uPheno)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7646, "download_url": "media/ontologies/UPHENO/10/upheno.owl", "submission_id": 10, "domain": "phenotype", "description": "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.", "documentation": null, "publication": null, "publications": [ { "id": "https://doi.org/10.1101/2024.09.18.613276", "title": "The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics" }, { "id": "https://zenodo.org/record/2382757", "title": "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species" }, { "id": "https://zenodo.org/record/3352149", "title": "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop: 2nd edition" } ], "products": [ { "id": "upheno.owl", "page": "https://github.com/obophenotype/upheno", "title": "uPheno 1 (inactive)", "description": "uPheno 1 is no longer actively maintained, please start using uPheno 2 (see below).", "ontology_purl": "http://purl.obolibrary.org/obo/upheno.owl" }, { "id": "upheno/mp-hp-view.owl", "page": "https://github.com/obophenotype/upheno/tree/master/hp-mp", "title": "uPheno MP-HP equivalence axioms", "description": "No longer actively maintained.", "ontology_purl": "http://purl.obolibrary.org/obo/upheno/mp-hp-view.owl" }, { "id": "upheno/v2/upheno.owl", "page": "https://github.com/obophenotype/upheno-dev", "title": "uPheno 2", "description": "The new version of uPheno, along with species independent phenotypes and additional phenotype relations. The ontology is still in Beta status, but we recommend users to migrate their infrastructures to uPheno 2 as uPheno 1 is no longer actively maintained.", "ontology_purl": "http://purl.obolibrary.org/obo/upheno/v2/upheno.owl" } ], "taxon": null, "date_released": "2025-10-13T13:54:48.396337", "date_created": "2025-10-13T13:54:48.396341", "home_page": "https://github.com/obophenotype/upheno", "version": null, "has_ontology_language": "OWL", "nb_classes": 193297, "nb_individuals": 0, "nb_properties": 344, "max_depth": 21, "max_children": 17637, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "fdef6ff25a97552912a1f3978d90862a" } }, { "acronym": "VODANA-MIGRANTS", "name": "VODANA MIGRANTS VOCABULARY", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4600, "download_url": "media/ontologies/VODANA-MIGRANTS/1/vodana-migrants.skos", "submission_id": 1, "domain": null, "description": "migrants ontologies ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-09-13T00:00:00", "date_created": "2021-09-13T07:05:04", "home_page": null, "version": "1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 250, "nb_properties": 21, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANA-MNV", "name": "VODANA-MIGRANTS-NEWS-VOCABULARY", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4596, "download_url": "media/ontologies/VODANA-MNV/12/vodana-mnv.skos", "submission_id": 12, "domain": null, "description": "These are vocabularies created for migrant data ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-05-30T00:00:00", "date_created": "2021-06-08T08:04:28", "home_page": null, "version": "5.0", "has_ontology_language": "SKOS", "nb_classes": 3, "nb_individuals": 420, "nb_properties": 21, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANA-MPA", "name": "VODANA-MIGRANTS-PRESS ARTICLES", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4819, "download_url": "media/ontologies/VODANA-MPA/3/vodana-mpa.skos", "submission_id": 3, "domain": null, "description": "migrants Press Articles ontologies", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-01-04T00:00:00", "date_created": "2022-01-04T16:29:15", "home_page": null, "version": "2", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 186, "nb_properties": 16, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODAN_ANC", "name": "VODAN ANC Vocabulary ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6779, "download_url": "media/ontologies/VODAN_ANC/2/vodan_anc.skos", "submission_id": 2, "domain": null, "description": "This is a general comment that will be ignored. The converter will detect automatically the line containing the column titles below, so you can have a header as long as you want.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-07-25T00:00:00", "date_created": "2024-07-25T08:20:25", "home_page": "https://vodan-totafrica.info/ANC", "version": "VI", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 382, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANANIGERIA", "name": "VODANANIGERIA", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4936, "download_url": "media/ontologies/VODANANIGERIA/3/vodananigeria.skos", "submission_id": 3, "domain": null, "description": "This ontology contains controlled terms and properties of the out patient register claim report used to collect out patient information within different facilities in Nigeria.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-02-21T00:00:00", "date_created": "2022-02-25T17:36:15", "home_page": null, "version": "2.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 53, "nb_properties": 13, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VODANA-TERMS", "name": "HEIGHT/LENGTH FOR AGE Z-SCORE", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4376, "download_url": "media/ontologies/VODANA-TERMS/1/vodana-terms.skos", "submission_id": 1, "domain": null, "description": "This is the HEIGHT/LENGTH FOR AGE Z-SCORE term.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-03-28T00:00:00", "date_created": "2021-03-28T17:47:09", "home_page": null, "version": "1", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 4, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONL-TASKS", "name": "Cognitive Reserves Assessment Tasks", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4061, "download_url": "media/ontologies/ONL-TASKS/1/onl-tasks.owl", "submission_id": 1, "domain": null, "description": "This ontology is an extension of the OntoNeuroLOG ontology, developed in the context of a project supported by Russian Foundation for Basic Research (19-29-01017 grant). The ontology organizes tests that are used for assessing cognitive reserves with the focus on keywords that can be employed in mining of PubMed publications.", "documentation": null, "publication": "http://ceur-ws.org/Vol-2648/paper3.pdf", "publications": null, "products": null, "taxon": null, "date_released": "2020-10-15T00:00:00", "date_created": "2020-10-15T08:18:04", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 47, "nb_individuals": 0, "nb_properties": 0, "max_depth": 5, "max_children": 11, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ONTOLOCO", "name": "Virtual Reality Ontology for Locomotion Rehabilitation Training of Stroke Injuries", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6022, "download_url": "media/ontologies/ONTOLOCO/1/ontoloco.owl", "submission_id": 1, "domain": null, "description": "The OntoLoco provides a standardized vocabulary of the stroke domain for effective communication and knowledge-sharing across virtual-reality-based locomotion rehabilitation programs.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-08-21T00:00:00", "date_created": "2023-08-21T07:41:48", "home_page": null, "version": "V 1.1", "has_ontology_language": "OWL", "nb_classes": 281, "nb_individuals": 0, "nb_properties": 8, "max_depth": 7, "max_children": 88, "avg_children": 12, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_NL", "name": "ORDO DUTCH", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7829, "download_url": "media/ontologies/ORDO_NL/20/ordo_nl.owl", "submission_id": 20, "domain": null, "description": "This ontology is the dutch version of ORDO with definition, labels and synonyms in dutch. ", "documentation": "https://www.orphadata.com/ordo/", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2013-06-20T12:00:00", "date_created": "2025-12-11T00:00:00", "home_page": null, "version": "4.8", "has_ontology_language": "OWL", "nb_classes": 16036, "nb_individuals": 0, "nb_properties": 13, "max_depth": 11, "max_children": 4477, "avg_children": 15, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ORDO_OBO", "name": "Orphanet Rare Diseases Ontology in OBO", "status": "Classified", "topics": null, "species": null, "submission": { "id": 150, "download_url": "media/ontologies/ORDO_OBO/1/ordo_obo.obo", "submission_id": 1, "domain": null, "description": "This is the OBO version of the Orphanet Rare Disease ontology (ORDO) which is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. \r\n\r\nIt derived from the Orphanet database (www.orpha.net ) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, SNOMED CT, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10). ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2014-02-04T00:00:00", "date_created": "2014-02-04T12:06:46", "home_page": "http://www.orpha.net", "version": "1.0", "has_ontology_language": "OBO", "nb_classes": 11699, "nb_individuals": 0, "nb_properties": 12, "max_depth": 11, "max_children": 3408, "avg_children": 13, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PAYMENTMODE", "name": "Payment Mode", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5550, "download_url": "media/ontologies/PAYMENTMODE/1/paymentmode.skos", "submission_id": 1, "domain": null, "description": "This class refers to the different payment methods.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-12-07T00:00:00", "date_created": "2022-12-07T20:11:21", "home_page": null, "version": null, "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 7, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VRD", "name": "Vaccineresearchdata", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5776, "download_url": "media/ontologies/VRD/1/vrd.owl", "submission_id": 1, "domain": null, "description": "This is test", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2023-04-17T00:00:00", "date_created": "2023-04-17T18:43:16", "home_page": null, "version": "2.0", "has_ontology_language": "OWL", "nb_classes": 13, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 7, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VSAO", "name": "Vertebrate Skeletal Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 677, "download_url": "media/ontologies/VSAO/20/vsao.obo", "submission_id": 20, "domain": null, "description": "VSAO is an anatomy ontology covering the vertebrate skeletal system. VSAO integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system.", "documentation": "https://www.phenoscape.org/wiki/Skeletal_Anatomy_Jamboree", "publication": "http://dx.plos.org/10.1371/journal.pone.0051070", "publications": null, "products": null, "taxon": null, "date_released": "2013-08-23T01:22:51", "date_created": "2013-08-23T01:22:51", "home_page": "http://phenoscape.org/wiki/Main_Page", "version": "2012-11-06", "has_ontology_language": "OBO", "nb_classes": 322, "nb_individuals": 0, "nb_properties": 18, "max_depth": 9, "max_children": 18, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VT", "name": "Vertebrate trait ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8092, "download_url": "media/ontologies/VT/151/vt.owl", "submission_id": 151, "domain": "phenotype", "description": "An ontology of traits covering vertebrates", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "vt.owl", "ontology_purl": "http://purl.obolibrary.org/obo/vt.owl" } ], "taxon": null, "date_released": "2026-04-06T13:36:39.960797", "date_created": "2026-04-06T13:36:39.960803", "home_page": "https://github.com/AnimalGenome/vertebrate-trait-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 4047, "nb_individuals": 0, "nb_properties": 2, "max_depth": 13, "max_children": 95, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "c7d0af766daf314c37a331693f4574be" } }, { "acronym": "VTO", "name": "Vertebrate Taxonomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4054, "download_url": "media/ontologies/VTO/15/vto.owl", "submission_id": 15, "domain": null, "description": "Comprehensive hierarchy of extinct and extant vertebrate taxa.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "vto.owl", "ontology_purl": "http://purl.obolibrary.org/obo/vto.owl" }, { "id": "vto.obo", "ontology_purl": "http://purl.obolibrary.org/obo/vto.obo" } ], "taxon": null, "date_released": "2020-11-16T13:20:18.985481", "date_created": "2020-11-16T13:20:18.985505", "home_page": "https://github.com/phenoscape/vertebrate-taxonomy-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 107254, "nb_individuals": 0, "nb_properties": 0, "max_depth": 39, "max_children": 451, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "45719ac2b0dbf0984a2a6555a20547c7" } }, { "acronym": "VVMM", "name": "In Vivo Methodologies Ontology for MAATrica metric", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6560, "download_url": "media/ontologies/VVMM/1/vvmm.obo", "submission_id": 1, "domain": null, "description": "MAATrica is a novel metric for assessing the coherence of methodologies in research papers within the fields of medicinal and nutraceutical chemistry. MAATrica employs user-controlled and customizable ontologies (in silico, in vitro and in vivo), enabling personalized analysis of research papers in the fields of medicinal and nutraceutical chemistry. Here we present the in vivo ontology we developed for the scope.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-04-21T00:00:00", "date_created": "2024-04-21T15:33:39", "home_page": null, "version": null, "has_ontology_language": "OBO", "nb_classes": 125, "nb_individuals": 0, "nb_properties": 0, "max_depth": 2, "max_children": 64, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VVO", "name": "Vitis Vinifera Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8099, "download_url": "media/ontologies/VVO/3/vvo.owl", "submission_id": 3, "domain": null, "description": "The VVO (Vitis Vinifera Ontology) is a controlled vocabulary that formally describes the morphological structures, phenological growth and developmental stages, quality parameters, dispositions, roles, and information entities of Vitis vinifera L., the common grapevine.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-03-19T00:00:00", "date_created": "2026-04-02T00:00:00", "home_page": "https://www.edithlaszny.eu/", "version": "2-004", "has_ontology_language": "OWL", "nb_classes": 3597, "nb_individuals": 20, "nb_properties": 53, "max_depth": 12, "max_children": 39, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WC", "name": "Whole-cell modeling ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 3551, "download_url": "media/ontologies/WC/13/wc.obo", "submission_id": 13, "domain": null, "description": "Ontology for whole-cell (WC) modeling\r\n\r\nSee https://wholecell.org for more information about WC modeling", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2020-04-15T01:34:48", "date_created": "2020-04-15T01:34:50", "home_page": "https://github.com/karrlab/wc_onto", "version": "0.0.1", "has_ontology_language": "OBO", "nb_classes": 272, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 35, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "WCM", "name": "Whole-cell modeling ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2241, "download_url": "media/ontologies/WCM/4/wcm.obo", "submission_id": 4, "domain": null, "description": "Ontology for whole-cell (WC) modeling\r\n\r\nSee https://wholecell.org for more information about WC modeling", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2019-02-05T02:22:30", "date_created": "2019-02-05T02:22:31", "home_page": null, "version": "0.0.1", "has_ontology_language": "OBO", "nb_classes": 112, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 35, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "YOGA", "name": "Yoga Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7927, "download_url": "media/ontologies/YOGA/1/yoga.owl", "submission_id": 1, "domain": null, "description": "Yoga Ontology is the list of vocabularies that define the yogic practice. Where Yoga is the union of the mind and body.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2020-07-16T00:00:00", "date_created": "2026-01-22T00:00:00", "home_page": null, "version": "0.1", "has_ontology_language": "OWL", "nb_classes": 17, "nb_individuals": 0, "nb_properties": 6, "max_depth": 4, "max_children": 8, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "GECKO", "name": "Genomics Cohorts Knowledge Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4204, "download_url": "media/ontologies/GECKO/10/gecko.owl", "submission_id": 10, "domain": "cohort studies", "description": "An ontology to represent genomics cohort attributes", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "gecko.owl", "ontology_purl": "http://purl.obolibrary.org/obo/gecko.owl" } ], "taxon": null, "date_released": "2021-01-25T12:26:36.034932", "date_created": "2021-01-25T12:26:36.034945", "home_page": "https://github.com/IHCC-cohorts/GECKO", "version": null, "has_ontology_language": "OWL", "nb_classes": 154, "nb_individuals": 0, "nb_properties": 3, "max_depth": 6, "max_children": 19, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "0fe7665071d5c0fe125cd5beedb429d6" } }, { "acronym": "GPML", "name": "Graphical Pathway Markup Language", "status": "Classified", "topics": null, "species": null, "submission": { "id": 947, "download_url": "media/ontologies/GPML/331/gpml.owl", "submission_id": 331, "domain": null, "description": "GPML is the file format used to store pathway content at WikiPathways. GPML is short for Graphical Pathway Markup Language, and it is a custom XML format compatible with pathway visualization and analysis tools such as Cytoscape and PathVisio.\r\n\r\nGet it as RDFa in HTML: http://vocabularies.wikipathways.org/gpml\r\n\r\nOr get it translated to RDF/XML from either of these URLs:\r\nhttp://getschema.org/rdfaliteextractor?url=http%3A%2F%2Fvocabularies.wikipathways.org%2Fgpml&out=rdf\r\n\r\nor\r\n\r\nhttp://rdf-translator.appspot.com/convert/rdfa/xml/http%3A%2F%2Fvocabularies.wikipathways.org%2Fgpml", "documentation": "http://www.wikipathways.org/index.php/Help:Frequently_Asked_Questions#What_is_GPML.3F", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-09T02:09:03", "date_created": "2017-12-09T02:09:03", "home_page": null, "version": "2013a", "has_ontology_language": "OWL", "nb_classes": 19, "nb_individuals": 1, "nb_properties": 25, "max_depth": 1, "max_children": 19, "avg_children": 19, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "NIF-RTH", "name": "NIF - Resource Type Hieracrchy (view)", "status": "Classified", "topics": null, "species": null, "submission": { "id": 37, "download_url": "media/ontologies/NIF-RTH/2/nif-rth.owl", "submission_id": 2, "domain": null, "description": "This is a view of NIFSTD (version 2.82) containing the Resource Type Hierarchy.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-10-28T07:00:00", "date_created": "2012-10-29T02:06:19", "home_page": null, "version": "unknown", "has_ontology_language": "OWL", "nb_classes": 167, "nb_individuals": 0, "nb_properties": 0, "max_depth": 6, "max_children": 15, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OBIB", "name": "Ontology for Biobanking", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5811, "download_url": "media/ontologies/OBIB/15/obib.owl", "submission_id": 15, "domain": "investigations", "description": "An ontology built for annotation and modeling of biobank repository and biobanking administration", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "obib.owl", "ontology_purl": "http://purl.obolibrary.org/obo/obib.owl" } ], "taxon": null, "date_released": "2023-05-15T15:17:32.258343", "date_created": "2023-05-15T15:17:32.258356", "home_page": "https://github.com/biobanking/biobanking", "version": null, "has_ontology_language": "OWL", "nb_classes": 1804, "nb_individuals": 226, "nb_properties": 93, "max_depth": 16, "max_children": 129, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "d834e37495f377aeaab15271c0cb18bb" } }, { "acronym": "OCD-O-3_TOPO", "name": "ICD-O-3 Topography", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6483, "download_url": "media/ontologies/OCD-O-3_TOPO/1/ocd-o-3_topo.owl", "submission_id": 1, "domain": null, "description": "International Classification of Diseases for Oncology, 3rd Revision, Topography", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-03-21T00:00:00", "date_created": "2024-03-21T19:44:16", "home_page": null, "version": "3.1", "has_ontology_language": "OWL", "nb_classes": 411, "nb_individuals": 0, "nb_properties": 3, "max_depth": 5, "max_children": 18, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGROUP", "name": "Orthologous Group Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 651, "download_url": "media/ontologies/OGROUP/1/ogroup.owl", "submission_id": 1, "domain": null, "description": "Ontology to help prossessing the information from orthologous groups in order to infer new functional annotations. The ontology integrates definitions from diverse ontologies.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-02-01T00:00:00", "date_created": "2016-10-26T12:44:58", "home_page": null, "version": "1.0", "has_ontology_language": "OWL", "nb_classes": 4, "nb_individuals": 3, "nb_properties": 45, "max_depth": 0, "max_children": 4, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OLAM", "name": "Ontology of Laboratory Animal Medicine", "status": "Unloadable", "topics": null, "species": null, "submission": { "id": 6782, "download_url": "media/ontologies/OLAM/7/olam.owl", "submission_id": 7, "domain": null, "description": "The OLAM is community-based biomedical ontology in the field of laboratory animal medicine, with the aim to ontologically represent entities and the relations among the entities related to laboratory animal medicine. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-07-30T01:17:51", "date_created": "2024-07-30T01:17:58", "home_page": "https://github.com/olam-ontology/OLAM", "version": "Vision Release: 1.0.20", "has_ontology_language": "OWL", "nb_classes": 280, "nb_individuals": 25, "nb_properties": 61, "max_depth": 15, "max_children": 13, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "OGSF", "name": "Ontology of Genetic Susceptibility Factor", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2366, "download_url": "media/ontologies/OGSF/11/ogsf.owl", "submission_id": 11, "domain": null, "description": "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ogsf.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ogsf.owl" } ], "taxon": null, "date_released": "2019-03-18T14:04:24.490843", "date_created": "2019-03-18T14:04:24.490878", "home_page": "none", "version": null, "has_ontology_language": "OWL", "nb_classes": 389, "nb_individuals": 57, "nb_properties": 143, "max_depth": 17, "max_children": 17, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "2f9daddd57d4fdb023da27dd2ae797e7" } }, { "acronym": "OHD", "name": "Oral Health and Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8050, "download_url": "media/ontologies/OHD/10/ohd.owl", "submission_id": 10, "domain": "health", "description": "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/32819435", "title": "Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology" } ], "products": [ { "id": "ohd.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ohd.owl" }, { "id": "ohd/dev/ohd.owl", "title": "OHD dev", "ontology_purl": "http://purl.obolibrary.org/obo/ohd/dev/ohd.owl" } ], "taxon": null, "date_released": "2026-03-23T14:20:00.640287", "date_created": "2026-03-23T14:20:00.640290", "home_page": "https://purl.obolibrary.org/obo/ohd/home", "version": null, "has_ontology_language": "OWL", "nb_classes": 1821, "nb_individuals": 32, "nb_properties": 90, "max_depth": 14, "max_children": 55, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "35f04e4c86b2a21d581bfeef365275ea" } }, { "acronym": "OHMI", "name": "Ontology of Host-Microbiome Interactions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8051, "download_url": "media/ontologies/OHMI/19/ohmi.owl", "submission_id": 19, "domain": "organisms", "description": "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ohmi.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ohmi.owl" } ], "taxon": null, "date_released": "2026-03-23T14:20:33.443199", "date_created": "2026-03-23T14:20:33.443204", "home_page": "https://github.com/ohmi-ontology/ohmi", "version": null, "has_ontology_language": "OWL", "nb_classes": 1303, "nb_individuals": 21, "nb_properties": 148, "max_depth": 18, "max_children": 82, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "96fdf8be0c22a14312773140e85c0b96" } }, { "acronym": "OHPI", "name": "Ontology of Host Pathogen Interactions", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2961, "download_url": "media/ontologies/OHPI/12/ohpi.owl", "submission_id": 12, "domain": null, "description": "OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is developed to represent manually curated HPI knowledge available in the PHIDIAS resource.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "ohpi.owl", "ontology_purl": "http://purl.obolibrary.org/obo/ohpi.owl" } ], "taxon": null, "date_released": "2019-10-01T03:21:01.637715", "date_created": "2019-10-01T03:21:01.637748", "home_page": "https://github.com/OHPI/ohpi", "version": null, "has_ontology_language": "OWL", "nb_classes": 11292, "nb_individuals": 295, "nb_properties": 320, "max_depth": 19, "max_children": 1603, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "f2179922c693fdacfe4c653e731812c5" } }, { "acronym": "OLATDV", "name": "Medaka Developmental Stages", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6546, "download_url": "media/ontologies/OLATDV/9/olatdv.owl", "submission_id": 9, "domain": "anatomy and development", "description": "Life cycle stages for Medaka", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "olatdv.obo", "ontology_purl": "http://purl.obolibrary.org/obo/olatdv.obo" }, { "id": "olatdv.owl", "ontology_purl": "http://purl.obolibrary.org/obo/olatdv.owl" } ], "taxon": null, "date_released": "2024-04-15T13:14:37.157938", "date_created": "2024-04-15T13:14:37.157942", "home_page": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv", "version": null, "has_ontology_language": "OWL", "nb_classes": 47, "nb_individuals": 0, "nb_properties": 3, "max_depth": 2, "max_children": 46, "avg_children": 23, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "657818e6ecc4cfd70d3f04f6cb8ec788" } }, { "acronym": "OM", "name": "Ontology of units of Measure", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7206, "download_url": "media/ontologies/OM/33/om.owl", "submission_id": 33, "domain": null, "description": "The Ontology of units of Measure (OM) 2.0 models concepts and relations important to scientific research. It has a strong focus on units, quantities, measurements, and dimensions. OM is modelled in OWL 2 - Web Ontology Language. The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units metre and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant or the quantity vaselife. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology and Typography.", "documentation": "https://github.com/HajoRijgersberg/OM/blob/master/README.md", "publication": "https://github.com/HajoRijgersberg/OM/blob/master/README.md#papers-on-om", "publications": null, "products": null, "taxon": null, "date_released": "2025-02-25T02:09:27", "date_created": "2025-02-25T02:09:31", "home_page": "https://github.com/HajoRijgersberg/OM", "version": "2.0.59", "has_ontology_language": "OWL", "nb_classes": 814, "nb_individuals": 2251, "nb_properties": 23, "max_depth": 5, "max_children": 207, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "XPO", "name": "Xenopus Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7499, "download_url": "media/ontologies/XPO/17/xpo.owl", "submission_id": 17, "domain": "phenotype", "description": "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/35317743", "title": "The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development." } ], "products": [ { "id": "xpo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/xpo.owl" }, { "id": "xpo.obo", "ontology_purl": "http://purl.obolibrary.org/obo/xpo.obo" } ], "taxon": { "id": "NCBITaxon:8353", "label": "Xenopus" }, "date_released": "2025-07-28T18:50:46.358260", "date_created": "2025-07-28T18:50:46.358263", "home_page": "https://github.com/obophenotype/xenopus-phenotype-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 30227, "nb_individuals": 57, "nb_properties": 278, "max_depth": 33, "max_children": 1093, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "5ec5548824894c1009e601dc8ea5bd88" } }, { "acronym": "WBBT", "name": "C. elegans Gross Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7557, "download_url": "media/ontologies/WBBT/32/wbbt.owl", "submission_id": 32, "domain": "anatomy and development", "description": "A structured controlled vocabulary of the anatomy of <i>Caenorhabditis elegans</i>.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/18629098", "title": "Building a cell and anatomy ontology of Caenorhabditis elegans" } ], "products": [ { "id": "wbbt.owl", "ontology_purl": "http://purl.obolibrary.org/obo/wbbt.owl" }, { "id": "wbbt.obo", "ontology_purl": "http://purl.obolibrary.org/obo/wbbt.obo" } ], "taxon": { "id": "NCBITaxon:6237", "label": "Caenorhabditis" }, "date_released": "2025-08-25T12:55:14.686128", "date_created": "2025-08-25T12:55:14.686134", "home_page": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 7574, "nb_individuals": 48, "nb_properties": 120, "max_depth": 9, "max_children": 2768, "avg_children": 21, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "07e22e2563205e06c371664857d8c729" } }, { "acronym": "PBO", "name": "Plant Breeding Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6851, "download_url": "media/ontologies/PBO/4/pbo.owl", "submission_id": 4, "domain": null, "description": "Plant Breeding Ontology (PBO): an ontology for the plant breeding community which captures more than 2200 entries where 80 represent the core terms. PBO has translations in 8 different languages: English (main language), Spanish, French, Dutch, German, Japanese, Catalan and Thai, as well as their definitions, synonyms, derived terms and samples of their usage. PBO has been built partially manually and semi automatically.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2024-08-30T00:00:00", "date_created": "2024-08-30T11:36:59", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 2272, "nb_individuals": 0, "nb_properties": 0, "max_depth": 3, "max_children": 2204, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PCMO", "name": "Pediatric Consultation and Monitoring Ontology ", "status": "Classified", "topics": null, "species": null, "submission": { "id": 854, "download_url": "media/ontologies/PCMO/4/pcmo.owl", "submission_id": 4, "domain": null, "description": "Pediatric Consultation and Monitoring Ontology consists of 10 main classes, 10 sub-classes, 39 properties (object-type and sub-object-type properties, data type), numerous OWL individuals and almost 90 SWRL rules (medical cases based on ARTI based diseases for pediatric patients).\r\nAlmost all the rules of the knowledge base consider:\r\n-Body temperature\r\n-Currently observed number of the local, major, and minor symptoms\r\n-Medications used and time of use in recent period (has drug and has drug time properties)\r\n-Presence of medical cold treatment applied in recent period ⇒ only one of medical case will be inferencing result.\r\nProject Funding: “This research project was funded in 2014 by the National Science Foundation- The Scientific and Technological Research Council of Turkey (TUBITAK) under 1501 type funding program with the ‘3140417’ grant number. The titled “Mobile Pediatric Consultation and Monitoring System” project was successfully completed by the end of 2015. The project was completed by collaboration of the Acıbadem Hospitals Group, Istanbul Aydin University and Semantica Internet and Software Services Trd. Ltd. Company in Turkey”. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2015-12-25T00:00:00", "date_created": "2017-11-22T14:46:45", "home_page": "http://cmpe.emu.edu.tr/duygu/", "version": "v.4.0", "has_ontology_language": "OWL", "nb_classes": 20, "nb_individuals": 201, "nb_properties": 27, "max_depth": 2, "max_children": 10, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "PEDTERM", "name": "Pediatric Terminology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 739, "download_url": "media/ontologies/PEDTERM/5/pedterm.owl", "submission_id": 5, "domain": null, "description": "Terms associated with pediatrics, representing information related to child health and development from pre-birth through 21 years of age; contributed by the National Institute of Child Health and Human Development.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-01-25T08:00:00", "date_created": "2013-01-25T15:48:08", "home_page": null, "version": "Version 2.0", "has_ontology_language": "OWL", "nb_classes": 1771, "nb_individuals": 0, "nb_properties": 7, "max_depth": 8, "max_children": 50, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "XEO", "name": "XEML Environment Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 252, "download_url": "media/ontologies/XEO/4/xeo.obo", "submission_id": 4, "domain": null, "description": "XeO has been created to help plant scientists in documenting and sharing metadata describing the abiotic environment.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2012-11-09T08:00:00", "date_created": "2014-06-25T08:07:43", "home_page": "http://xeo.codeplex.com/", "version": "1.6", "has_ontology_language": "OBO", "nb_classes": 145, "nb_individuals": 0, "nb_properties": 4, "max_depth": 5, "max_children": 12, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "XLMOD", "name": "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8068, "download_url": "media/ontologies/XLMOD/8/xlmod.owl", "submission_id": 8, "domain": "chemistry and biochemistry", "description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "xlmod.obo", "ontology_purl": "http://purl.obolibrary.org/obo/xlmod.obo" }, { "id": "xlmod.owl", "ontology_purl": "http://purl.obolibrary.org/obo/xlmod.owl" } ], "taxon": null, "date_released": "2026-03-30T12:41:37.232658", "date_created": "2026-03-30T12:41:37.232674", "home_page": "http://www.psidev.info/groups/controlled-vocabularies", "version": null, "has_ontology_language": "OWL", "nb_classes": 1106, "nb_individuals": 0, "nb_properties": 16, "max_depth": 5, "max_children": 277, "avg_children": 17, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "74e1adf297816fbd29e4d56f3b9fab30" } }, { "acronym": "XREF-FUNDER-REG", "name": "CrossRef Funder Registry", "status": "Classified", "topics": null, "species": null, "submission": { "id": 7984, "download_url": "media/ontologies/XREF-FUNDER-REG/32/xref-funder-reg.skos", "submission_id": 32, "domain": null, "description": "The Funder Registry provides a common taxonomy of international funding body names that funding data participants should use to normalize funder names and IDs for deposit with Crossref.\r\nThe list can be used to present authors with a pre-populated \"Funder Name\" option at the time of submission, and can also be used to match funder names extracted from papers.\r\nThe list is available to download as an RDF file, and is freely available under a CC0 license waiver.\r\nThis information was obtained from a GitLab repository created by Bryan Vickery (see Homepage). The first version downloaded was 1.34.", "documentation": "https://gitlab.com/crossref/open_funder_registry/-/blob/master/README.md", "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-02-19T02:20:55", "date_created": "2026-02-18T00:00:00", "home_page": "https://gitlab.com/crossref/open_funder_registry", "version": null, "has_ontology_language": "SKOS", "nb_classes": 5, "nb_individuals": 202624, "nb_properties": 0, "max_depth": 1, "max_children": 3, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ZEA", "name": "Maize Gross Anatomy Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 435, "download_url": "media/ontologies/ZEA/2/zea.obo", "submission_id": 2, "domain": null, "description": null, "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2006-12-07T08:00:00", "date_created": "2012-04-12T21:34:53", "home_page": "http://www.maizemap.org/", "version": "1.2", "has_ontology_language": "OBO", "nb_classes": 179, "nb_individuals": 0, "nb_properties": 3, "max_depth": 4, "max_children": 16, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ZECO", "name": "Zebrafish Experimental Conditions Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4930, "download_url": "media/ontologies/ZECO/10/zeco.owl", "submission_id": 10, "domain": "environment", "description": "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "zeco.obo", "ontology_purl": "http://purl.obolibrary.org/obo/zeco.obo" }, { "id": "zeco.owl", "ontology_purl": "http://purl.obolibrary.org/obo/zeco.owl" }, { "id": "zeco.json", "ontology_purl": "http://purl.obolibrary.org/obo/zeco.json" } ], "taxon": { "id": "NCBITaxon:7954", "label": "Danio" }, "date_released": "2022-02-28T13:00:47.304814", "date_created": "2022-02-28T13:00:47.304827", "home_page": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 161, "nb_individuals": 0, "nb_properties": 3, "max_depth": 8, "max_children": 15, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "967d30201f9997bd872c91574133fb07" } }, { "acronym": "ZFA", "name": "Zebrafish anatomy and development ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8093, "download_url": "media/ontologies/ZFA/91/zfa.owl", "submission_id": 91, "domain": "anatomy and development", "description": "A structured controlled vocabulary of the anatomy and development of the Zebrafish", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/24568621", "title": "The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio." } ], "products": [ { "id": "zfa.owl", "ontology_purl": "http://purl.obolibrary.org/obo/zfa.owl" }, { "id": "zfa.obo", "ontology_purl": "http://purl.obolibrary.org/obo/zfa.obo" } ], "taxon": { "id": "NCBITaxon:7954", "label": "Danio" }, "date_released": "2026-04-06T13:38:28.912450", "date_created": "2026-04-06T13:38:28.912452", "home_page": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources", "version": null, "has_ontology_language": "OWL", "nb_classes": 3285, "nb_individuals": 0, "nb_properties": 10, "max_depth": 11, "max_children": 234, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "10a97c0fdeed5f6d6865a86a0bbd0112" } }, { "acronym": "ZFS", "name": "Zebrafish developmental stages ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8094, "download_url": "media/ontologies/ZFS/10/zfs.owl", "submission_id": 10, "domain": "anatomy and development", "description": "Developmental stages of the Zebrafish", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "zfs.owl", "ontology_purl": "http://purl.obolibrary.org/obo/zfs.owl" }, { "id": "zfs.obo", "ontology_purl": "http://purl.obolibrary.org/obo/zfs.obo" } ], "taxon": { "id": "NCBITaxon:7954", "label": "Danio" }, "date_released": "2026-04-06T13:39:12.971844", "date_created": "2026-04-06T13:39:12.971851", "home_page": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources", "version": null, "has_ontology_language": "OWL", "nb_classes": 3285, "nb_individuals": 0, "nb_properties": 10, "max_depth": 11, "max_children": 234, "avg_children": 6, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "36c8b909f200e1dbb3301509aa0bef1e" } }, { "acronym": "ZONMW-ADMIN-MD", "name": "ZonMW Administrative Metadata Vocabulary", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4255, "download_url": "media/ontologies/ZONMW-ADMIN-MD/13/zonmw-admin-md.skos", "submission_id": 13, "domain": null, "description": "Collections of terms for the ZonMW COVID Training project. These terms are based on vocabularies provided for describing project-level metadata.\r\n\r\nThis submission was created using SKOS Play from an Excel spreadsheet.", "documentation": "https://github.com/fair-data-collective/zonmw-project-admin", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-02-09T02:14:46", "date_created": "2021-02-09T02:14:47", "home_page": "https://github.com/fair-data-collective/zonmw-project-admin/tree/main/ontology", "version": "1.2.0a", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 231, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ZONMW-CONTENT", "name": "ZonMW COVID-19", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4806, "download_url": "media/ontologies/ZONMW-CONTENT/37/zonmw-content.skos", "submission_id": 37, "domain": null, "description": "Collections of terms for the ZonMW COVID19 programme. These terms are based on vocabularies provided for describing project and data content metadata. This submission was created using sheet2rdf GitHub workflow.", "documentation": "https://github.com/fair-data-collective/zonmw-covid19-vocabulary", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-01-01T00:00:00", "date_created": "2022-01-01T21:56:02", "home_page": "https://github.com/fair-data-collective/zonmw-covid19-vocabulary", "version": "2.4.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 273, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ZONMW-GENERIC", "name": "ZonMw Generic Terms", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5110, "download_url": "media/ontologies/ZONMW-GENERIC/21/zonmw-generic.skos", "submission_id": 21, "domain": null, "description": "General-purpose terms for the ZonMw ", "documentation": "https://raw.githubusercontent.com/fair-data-collective/zonmw-generic-vocabulary/", "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-05-25T00:00:00", "date_created": "2022-05-25T20:01:09", "home_page": "https://raw.githubusercontent.com/fair-data-collective/zonmw-generic-vocabulary/", "version": "1.5.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 162, "nb_properties": 0, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "ZP", "name": "Zebrafish Phenotype Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 6645, "download_url": "media/ontologies/ZP/10/zp.owl", "submission_id": 10, "domain": "phenotype", "description": "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.", "documentation": null, "publication": null, "publications": null, "products": [ { "id": "zp.owl", "ontology_purl": "http://purl.obolibrary.org/obo/zp.owl" }, { "id": "zp.obo", "ontology_purl": "http://purl.obolibrary.org/obo/zp.obo" } ], "taxon": null, "date_released": "2024-06-03T14:41:58.466591", "date_created": "2024-06-03T14:41:58.466595", "home_page": "https://github.com/obophenotype/zebrafish-phenotype-ontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 63811, "nb_individuals": 0, "nb_properties": 166, "max_depth": 16, "max_children": 4012, "avg_children": 4, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "2231ebaa95becf8ff34a33c95a8d4350" } }, { "acronym": "VEO", "name": "Visualized Emotion Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 1130, "download_url": "media/ontologies/VEO/1/veo.owl", "submission_id": 1, "domain": null, "description": "Visual Emotion Ontology (VEO) is an ontology that links visualizations with specific emotions from the Ortony, Clore, and Collins' description of human emotions.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2017-12-27T00:00:00", "date_created": "2017-12-27T16:20:48", "home_page": null, "version": "0.5", "has_ontology_language": "OWL", "nb_classes": 1012, "nb_individuals": 44, "nb_properties": 39, "max_depth": 15, "max_children": 35, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VHO", "name": "VFB Helper Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4697, "download_url": "media/ontologies/VHO/1/vho.owl", "submission_id": 1, "domain": null, "description": "Ontology of terms used for annotating data in Virtual Fly Brain, including anatomical templates.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2021-11-15T00:00:00", "date_created": "2021-11-16T10:45:08", "home_page": null, "version": null, "has_ontology_language": "OWL", "nb_classes": 9, "nb_individuals": 0, "nb_properties": 0, "max_depth": 1, "max_children": 9, "avg_children": 9, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VFB_DRIVERS", "name": "vfb_drivers", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8110, "download_url": "media/ontologies/VFB_DRIVERS/213/vfb_drivers.owl", "submission_id": 213, "domain": null, "description": "An ontology of Drosophila melanogaster drivers and expression patterns., An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.", "documentation": null, "publication": "[]", "publications": null, "products": null, "taxon": null, "date_released": "2026-04-14T01:16:56", "date_created": "2026-04-13T00:00:00", "home_page": null, "version": "2026-04-13", "has_ontology_language": "OWL", "nb_classes": 20939, "nb_individuals": 0, "nb_properties": 4, "max_depth": 6, "max_children": 18597, "avg_children": 1365, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VHOG", "name": "Vertebrate Homologous Organ Group Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 369, "download_url": "media/ontologies/VHOG/12/vhog.obo", "submission_id": 12, "domain": null, "description": "vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project.\r\nThe mapping to species-specific anatomical ontologies is provided as a separated file:\r\nhttp://bgee.unil.ch/download/organ_association_vHOG.txt\r\nThis mapping represents homology-strict relationships, in the sense of HOM:0000007 \"historical homology\". Each mapping has been manually reviewed, and we provide confidence codes and references when available.", "documentation": "http://bgee.unil.ch/?page=documentation#sectionHomologyRelationships", "publication": "http://www.unil.ch/dee/page31219_en.html", "publications": null, "products": null, "taxon": null, "date_released": "2017-05-17T01:11:42", "date_created": "2017-05-17T01:11:42", "home_page": "http://bgee.unil.ch", "version": "unknown", "has_ontology_language": "OBO", "nb_classes": 1185, "nb_individuals": 0, "nb_properties": 1, "max_depth": 8, "max_children": 25, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VICO", "name": "Vaccination Informed Consent Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 494, "download_url": "media/ontologies/VICO/10/vico.owl", "submission_id": 10, "domain": null, "description": "The Vaccination Informed Consent Ontology (VICO) is a community-driven ontology in the domain of vaccination/immunization informed consent.", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2016-01-31T02:14:05", "date_created": "2016-01-31T02:14:07", "home_page": "https://github.com/VICO-ontology", "version": "Arbor version; 1.0.52", "has_ontology_language": "OWL", "nb_classes": 710, "nb_individuals": 126, "nb_properties": 94, "max_depth": 18, "max_children": 29, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VIDO", "name": "Virus Infectious Disease Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 5510, "download_url": "media/ontologies/VIDO/3/vido.owl", "submission_id": 3, "domain": null, "description": "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc. ", "documentation": "https://github.com/infectious-disease-ontology-extensions/ido-virus", "publication": "https://osf.io/5bx8c", "publications": null, "products": null, "taxon": null, "date_released": "2020-06-05T00:00:00", "date_created": "2022-11-28T03:58:43", "home_page": "https://github.com/infectious-disease-ontology-extensions/ido-virus", "version": "10-27-2022", "has_ontology_language": "OWL", "nb_classes": 432, "nb_individuals": 0, "nb_properties": 32, "max_depth": 10, "max_children": 19, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VIO", "name": "Vaccine Investigation Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 2503, "download_url": "media/ontologies/VIO/1/vio.owl", "submission_id": 1, "domain": null, "description": "VIO is an VO-extended ontology with the aim to standardize the metadata types in various vaccine investigation studies.", "documentation": null, "publication": "https://sites.google.com/site/vdosworkshop/VDOS-2018", "publications": null, "products": null, "taxon": null, "date_released": "2019-04-29T00:00:00", "date_created": "2019-04-29T21:31:04", "home_page": "https://github.com/vaccineontology/VIO", "version": "Vision Release: 1.0.01", "has_ontology_language": "OWL", "nb_classes": 80, "nb_individuals": 0, "nb_properties": 46, "max_depth": 10, "max_children": 15, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VIVO-ISF", "name": "VIVO-Integrated Semantic Framework", "status": "Classified", "topics": null, "species": null, "submission": { "id": 732, "download_url": "media/ontologies/VIVO-ISF/1/vivo-isf.owl", "submission_id": 1, "domain": null, "description": "The Integrated Semantic Framework ontology modules for VIVO (the VIVO-ISF ontology) provide a set of types (classes) and relationships (properties) to represent researchers and the full context in which they work. ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2013-12-14T00:00:00", "date_created": "2015-09-13T18:32:39", "home_page": "vivoweb.org", "version": "1.6", "has_ontology_language": "OWL", "nb_classes": 414, "nb_individuals": 14, "nb_properties": 415, "max_depth": 10, "max_children": 35, "avg_children": 3, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } }, { "acronym": "VO", "name": "Vaccine Ontology", "status": "Classified", "topics": null, "species": null, "submission": { "id": 8013, "download_url": "media/ontologies/VO/313/vo.owl", "submission_id": 313, "domain": "health", "description": "VO is a biomedical ontology in the domain of vaccine and vaccination.", "documentation": null, "publication": null, "publications": [ { "id": "https://www.ncbi.nlm.nih.gov/pubmed/23256535", "title": "Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses" }, { "id": "https://www.ncbi.nlm.nih.gov/pubmed/21624163", "title": "Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology" } ], "products": [ { "id": "vo.owl", "ontology_purl": "http://purl.obolibrary.org/obo/vo.owl" } ], "taxon": null, "date_released": "2026-03-09T15:22:39.439313", "date_created": "2026-03-09T15:22:39.439319", "home_page": "https://violinet.org/vaccineontology", "version": null, "has_ontology_language": "OWL", "nb_classes": 14788, "nb_individuals": 590, "nb_properties": 122, "max_depth": 20, "max_children": 1899, "avg_children": 5, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": "95c1627c0cda30e7af1ebb5f717de82e" } }, { "acronym": "VODANACOVID", "name": "VODANA-COVIDTERMS", "status": "Classified", "topics": null, "species": null, "submission": { "id": 4851, "download_url": "media/ontologies/VODANACOVID/4/vodanacovid.skos", "submission_id": 4, "domain": null, "description": "Ontology containing the controlled terms and semantic properties used in the COVID-19 generic template used within different facilities in VODANA ", "documentation": null, "publication": null, "publications": null, "products": null, "taxon": null, "date_released": "2022-01-24T00:00:00", "date_created": "2022-01-24T09:37:31", "home_page": null, "version": "3.0", "has_ontology_language": "SKOS", "nb_classes": 2, "nb_individuals": 54, "nb_properties": 5, "max_depth": 1, "max_children": 2, "avg_children": 2, "classifiable": true, "nb_inconsistent": 0, "indexed": true, "md5sum": null } } ]
