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SOPHARM - Suggested Ontology for Pharmacogenomics

SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.

Ontology metadata

Topicspharmacogenomics, phenomics, preclinical and clinical studies, genomics
SpeciesAll life
Class Count144
Unsatisfiable classes0
oboInOwl:remark
2012-05-31
owl:versionInfo
Author: Adrien Coulet
Version: SO-Pharm 2.0 (alpha version)
Release: 09/19/2007
Contact: adrien dot coulet at loria dot fr
University of Nancy
rdfs:comment
SO-Pharm SCOPE: 
SO-Pharm is a formal ontology that represents domain knowledge in pharmacogenomics. 
To achieve this goal SO-Pharm articulates ontologies from sub domains of phamacogenomics (i.e. genotype, phenotype, drug, trial representations).
SO-Pharm enables to support knowledge about pharmacogenomic hypothesis, case study, and clinical investigations in pharmacogenomics.
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